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[run] |
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omit = |
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*/tests/* |
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include MANIFEST.in |
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include setup.py |
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include README.rst |
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prune PyCTBN/test_data |
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prune PyCTBN/tests |
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prune tests |
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prune test_data |
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prune *tests* |
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prune *test* |
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# License: MIT License |
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import PyCTBN.PyCTBN.estimators |
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from PyCTBN.PyCTBN.estimators import * |
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import PyCTBN.PyCTBN.optimizers |
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from PyCTBN.PyCTBN.optimizers import * |
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import PyCTBN.PyCTBN.structure_graph |
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from PyCTBN.PyCTBN.structure_graph import * |
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import PyCTBN.PyCTBN.utility |
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from PyCTBN.PyCTBN.utility import * |
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@ -1,5 +0,0 @@ |
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# License: MIT License |
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import PyCTBN.PyCTBN |
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from PyCTBN.PyCTBN import * |
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<li class="toctree-l2"><a class="reference internal" href="examples.html#implementing-your-own-data-importer">Implementing your own data importer</a></li> |
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<li class="toctree-l2"><a class="reference internal" href="examples.html#parameters-estimation-example">Parameters Estimation Example</a></li> |
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<li class="toctree-l2"><a class="reference internal" href="examples.html#structure-estimation-example">Structure Estimation Example</a></li> |
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<div id="content" class="hfeed entry-container hentry"> |
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<section id="pyctbn-pyctbn-estimators-package"> |
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||||||
<h1>PyCTBN.PyCTBN.estimators package<a class="headerlink" href="#pyctbn-pyctbn-estimators-package" title="Permalink to this headline">¶</a></h1> |
|
||||||
<section id="submodules"> |
|
||||||
<h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this headline">¶</a></h2> |
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||||||
</section> |
|
||||||
<section id="module-PyCTBN.PyCTBN.estimators.fam_score_calculator"> |
|
||||||
<span id="pyctbn-pyctbn-estimators-fam-score-calculator-module"></span><h2>PyCTBN.PyCTBN.estimators.fam_score_calculator module<a class="headerlink" href="#module-PyCTBN.PyCTBN.estimators.fam_score_calculator" title="Permalink to this headline">¶</a></h2> |
|
||||||
<dl class="py class"> |
|
||||||
<dt id="PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator"> |
|
||||||
<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.PyCTBN.estimators.fam_score_calculator.</code><code class="sig-name descname">FamScoreCalculator</code><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></p> |
|
||||||
<p>Has the task of calculating the FamScore of a node by using a Bayesian score function</p> |
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.get_fam_score"> |
|
||||||
<code class="sig-name descname">get_fam_score</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">cims</span><span class="p">:</span> <span class="n">numpy.array</span></em>, <em class="sig-param"><span class="n">tau_xu</span><span class="p">:</span> <span class="n">float</span> <span class="o">=</span> <span class="default_value">0.1</span></em>, <em class="sig-param"><span class="n">alpha_xu</span><span class="p">:</span> <span class="n">float</span> <span class="o">=</span> <span class="default_value">1</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.get_fam_score" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Calculate the FamScore value of the node</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><ul class="simple"> |
|
||||||
<li><p><strong>cims</strong> (<em>np.array</em>) – np.array with all the node’s cims</p></li> |
|
||||||
<li><p><strong>tau_xu</strong> (<em>float</em><em>, </em><em>optional</em>) – hyperparameter over the CTBN’s q parameters, default to 0.1</p></li> |
|
||||||
<li><p><strong>alpha_xu</strong> (<em>float</em><em>, </em><em>optional</em>) – hyperparameter over the CTBN’s q parameters, default to 1</p></li> |
|
||||||
</ul> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">Returns</dt> |
|
||||||
<dd class="field-even"><p>the FamScore value of the node</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-odd">Return type</dt> |
|
||||||
<dd class="field-odd"><p>float</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.marginal_likelihood_q"> |
|
||||||
<code class="sig-name descname">marginal_likelihood_q</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">cims</span><span class="p">:</span> <span class="n">numpy.array</span></em>, <em class="sig-param"><span class="n">tau_xu</span><span class="p">:</span> <span class="n">float</span> <span class="o">=</span> <span class="default_value">0.1</span></em>, <em class="sig-param"><span class="n">alpha_xu</span><span class="p">:</span> <span class="n">float</span> <span class="o">=</span> <span class="default_value">1</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.marginal_likelihood_q" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Calculate the value of the marginal likelihood over q of the node identified by the label node_id</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><ul class="simple"> |
|
||||||
<li><p><strong>cims</strong> (<em>np.array</em>) – np.array with all the node’s cims</p></li> |
|
||||||
<li><p><strong>tau_xu</strong> (<em>float</em>) – hyperparameter over the CTBN’s q parameters</p></li> |
|
||||||
<li><p><strong>alpha_xu</strong> (<em>float</em>) – hyperparameter over the CTBN’s q parameters</p></li> |
|
||||||
</ul> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">Returns</dt> |
|
||||||
<dd class="field-even"><p>the value of the marginal likelihood over q</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-odd">Return type</dt> |
|
||||||
<dd class="field-odd"><p>float</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.marginal_likelihood_theta"> |
|
||||||
<code class="sig-name descname">marginal_likelihood_theta</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">cims</span><span class="p">:</span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix" title="PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix">PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix</a></span></em>, <em class="sig-param"><span class="n">alpha_xu</span><span class="p">:</span> <span class="n">float</span></em>, <em class="sig-param"><span class="n">alpha_xxu</span><span class="p">:</span> <span class="n">float</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.marginal_likelihood_theta" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Calculate the FamScore value of the node identified by the label node_id</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><ul class="simple"> |
|
||||||
<li><p><strong>cims</strong> (<em>np.array</em>) – np.array with all the node’s cims</p></li> |
|
||||||
<li><p><strong>alpha_xu</strong> (<em>float</em>) – hyperparameter over the CTBN’s q parameters, default to 0.1</p></li> |
|
||||||
<li><p><strong>alpha_xxu</strong> (<em>float</em>) – distribuited hyperparameter over the CTBN’s theta parameters</p></li> |
|
||||||
</ul> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">Returns</dt> |
|
||||||
<dd class="field-even"><p>the value of the marginal likelihood over theta</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-odd">Return type</dt> |
|
||||||
<dd class="field-odd"><p>float</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.single_cim_xu_marginal_likelihood_q"> |
|
||||||
<code class="sig-name descname">single_cim_xu_marginal_likelihood_q</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">M_xu_suff_stats</span><span class="p">:</span> <span class="n">float</span></em>, <em class="sig-param"><span class="n">T_xu_suff_stats</span><span class="p">:</span> <span class="n">float</span></em>, <em class="sig-param"><span class="n">tau_xu</span><span class="p">:</span> <span class="n">float</span> <span class="o">=</span> <span class="default_value">0.1</span></em>, <em class="sig-param"><span class="n">alpha_xu</span><span class="p">:</span> <span class="n">float</span> <span class="o">=</span> <span class="default_value">1</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.single_cim_xu_marginal_likelihood_q" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Calculate the marginal likelihood on q of the node when assumes a specif value |
|
||||||
and a specif parents’s assignment</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><ul class="simple"> |
|
||||||
<li><p><strong>M_xu_suff_stats</strong> – value of the suffucient statistic M[x|u]</p></li> |
|
||||||
<li><p><strong>T_xu_suff_stats</strong> (<em>float</em>) – value of the suffucient statistic T[x|u]</p></li> |
|
||||||
<li><p><strong>cim</strong> (<em>class:'ConditionalIntensityMatrix'</em>) – A conditional_intensity_matrix object with the sufficient statistics</p></li> |
|
||||||
<li><p><strong>tau_xu</strong> (<em>float</em>) – hyperparameter over the CTBN’s q parameters</p></li> |
|
||||||
<li><p><strong>alpha_xu</strong> (<em>float</em>) – hyperparameter over the CTBN’s q parameters</p></li> |
|
||||||
</ul> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">Returns</dt> |
|
||||||
<dd class="field-even"><p>the value of the marginal likelihood of the node when assumes a specif value</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-odd">Return type</dt> |
|
||||||
<dd class="field-odd"><p>float</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.single_cim_xu_marginal_likelihood_theta"> |
|
||||||
<code class="sig-name descname">single_cim_xu_marginal_likelihood_theta</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">index</span><span class="p">:</span> <span class="n">int</span></em>, <em class="sig-param"><span class="n">cim</span><span class="p">:</span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix" title="PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix">PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix</a></span></em>, <em class="sig-param"><span class="n">alpha_xu</span><span class="p">:</span> <span class="n">float</span></em>, <em class="sig-param"><span class="n">alpha_xxu</span><span class="p">:</span> <span class="n">float</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.single_cim_xu_marginal_likelihood_theta" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Calculate the marginal likelihood on q of the node when assumes a specif value |
|
||||||
and a specif parents’s assignment</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><ul class="simple"> |
|
||||||
<li><p><strong>cim</strong> (<em>class:'ConditionalIntensityMatrix'</em>) – A conditional_intensity_matrix object with the sufficient statistics</p></li> |
|
||||||
<li><p><strong>alpha_xu</strong> (<em>float</em>) – hyperparameter over the CTBN’s q parameters</p></li> |
|
||||||
<li><p><strong>alpha_xxu</strong> (<em>float</em>) – distribuited hyperparameter over the CTBN’s theta parameters</p></li> |
|
||||||
</ul> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">Returns</dt> |
|
||||||
<dd class="field-even"><p>the value of the marginal likelihood over theta when the node assumes a specif value</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-odd">Return type</dt> |
|
||||||
<dd class="field-odd"><p>float</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.single_internal_cim_xxu_marginal_likelihood_theta"> |
|
||||||
<code class="sig-name descname">single_internal_cim_xxu_marginal_likelihood_theta</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">M_xxu_suff_stats</span><span class="p">:</span> <span class="n">float</span></em>, <em class="sig-param"><span class="n">alpha_xxu</span><span class="p">:</span> <span class="n">float</span> <span class="o">=</span> <span class="default_value">1</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.single_internal_cim_xxu_marginal_likelihood_theta" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Calculate the second part of the marginal likelihood over theta formula</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><ul class="simple"> |
|
||||||
<li><p><strong>M_xxu_suff_stats</strong> (<em>float</em>) – value of the suffucient statistic M[xx’<a href="#id1"><span class="problematic" id="id2">|</span></a>u]</p></li> |
|
||||||
<li><p><strong>alpha_xxu</strong> (<em>float</em>) – distribuited hyperparameter over the CTBN’s theta parameters</p></li> |
|
||||||
</ul> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">Returns</dt> |
|
||||||
<dd class="field-even"><p>the value of the marginal likelihood over theta when the node assumes a specif value</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-odd">Return type</dt> |
|
||||||
<dd class="field-odd"><p>float</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.variable_cim_xu_marginal_likelihood_q"> |
|
||||||
<code class="sig-name descname">variable_cim_xu_marginal_likelihood_q</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">cim</span><span class="p">:</span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix" title="PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix">PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix</a></span></em>, <em class="sig-param"><span class="n">tau_xu</span><span class="p">:</span> <span class="n">float</span> <span class="o">=</span> <span class="default_value">0.1</span></em>, <em class="sig-param"><span class="n">alpha_xu</span><span class="p">:</span> <span class="n">float</span> <span class="o">=</span> <span class="default_value">1</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.variable_cim_xu_marginal_likelihood_q" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Calculate the value of the marginal likelihood over q given a cim</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><ul class="simple"> |
|
||||||
<li><p><strong>cim</strong> (<em>class:'ConditionalIntensityMatrix'</em>) – A conditional_intensity_matrix object with the sufficient statistics</p></li> |
|
||||||
<li><p><strong>tau_xu</strong> (<em>float</em>) – hyperparameter over the CTBN’s q parameters</p></li> |
|
||||||
<li><p><strong>alpha_xu</strong> (<em>float</em>) – hyperparameter over the CTBN’s q parameters</p></li> |
|
||||||
</ul> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">Returns</dt> |
|
||||||
<dd class="field-even"><p>the value of the marginal likelihood over q</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-odd">Return type</dt> |
|
||||||
<dd class="field-odd"><p>float</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.variable_cim_xu_marginal_likelihood_theta"> |
|
||||||
<code class="sig-name descname">variable_cim_xu_marginal_likelihood_theta</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">cim</span><span class="p">:</span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix" title="PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix">PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix</a></span></em>, <em class="sig-param"><span class="n">alpha_xu</span><span class="p">:</span> <span class="n">float</span></em>, <em class="sig-param"><span class="n">alpha_xxu</span><span class="p">:</span> <span class="n">float</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.variable_cim_xu_marginal_likelihood_theta" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Calculate the value of the marginal likelihood over theta given a cim</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><ul class="simple"> |
|
||||||
<li><p><strong>cim</strong> (<em>class:'ConditionalIntensityMatrix'</em>) – A conditional_intensity_matrix object with the sufficient statistics</p></li> |
|
||||||
<li><p><strong>alpha_xu</strong> (<em>float</em>) – hyperparameter over the CTBN’s q parameters, default to 0.1</p></li> |
|
||||||
<li><p><strong>alpha_xxu</strong> (<em>float</em>) – distribuited hyperparameter over the CTBN’s theta parameters</p></li> |
|
||||||
</ul> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">Returns</dt> |
|
||||||
<dd class="field-even"><p>the value of the marginal likelihood over theta</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-odd">Return type</dt> |
|
||||||
<dd class="field-odd"><p>float</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
</section> |
|
||||||
<section id="module-PyCTBN.PyCTBN.estimators.parameters_estimator"> |
|
||||||
<span id="pyctbn-pyctbn-estimators-parameters-estimator-module"></span><h2>PyCTBN.PyCTBN.estimators.parameters_estimator module<a class="headerlink" href="#module-PyCTBN.PyCTBN.estimators.parameters_estimator" title="Permalink to this headline">¶</a></h2> |
|
||||||
<dl class="py class"> |
|
||||||
<dt id="PyCTBN.PyCTBN.estimators.parameters_estimator.ParametersEstimator"> |
|
||||||
<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.PyCTBN.estimators.parameters_estimator.</code><code class="sig-name descname">ParametersEstimator</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">trajectories</span><span class="p">:</span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory" title="PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory">PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory</a></span></em>, <em class="sig-param"><span class="n">net_graph</span><span class="p">:</span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph" title="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph">PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph</a></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.parameters_estimator.ParametersEstimator" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></p> |
|
||||||
<p>Has the task of computing the cims of particular node given the trajectories and the net structure |
|
||||||
in the graph <code class="docutils literal notranslate"><span class="pre">_net_graph</span></code>.</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><ul class="simple"> |
|
||||||
<li><p><strong>trajectories</strong> (<a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory" title="PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory"><em>Trajectory</em></a>) – the trajectories</p></li> |
|
||||||
<li><p><strong>net_graph</strong> (<a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph" title="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph"><em>NetworkGraph</em></a>) – the net structure</p></li> |
|
||||||
</ul> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">_single_set_of_cims</dt> |
|
||||||
<dd class="field-even"><p>the set of cims object that will hold the cims of the node</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.estimators.parameters_estimator.ParametersEstimator.compute_parameters_for_node"> |
|
||||||
<code class="sig-name descname">compute_parameters_for_node</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">node_id</span><span class="p">:</span> <span class="n">str</span></em><span class="sig-paren">)</span> → <a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims" title="PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims">PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims</a><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.parameters_estimator.ParametersEstimator.compute_parameters_for_node" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Compute the CIMS of the node identified by the label <code class="docutils literal notranslate"><span class="pre">node_id</span></code>.</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><p><strong>node_id</strong> (<em>string</em>) – the node label</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">Returns</dt> |
|
||||||
<dd class="field-even"><p>A SetOfCims object filled with the computed CIMS</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-odd">Return type</dt> |
|
||||||
<dd class="field-odd"><p><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims" title="PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims">SetOfCims</a></p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.estimators.parameters_estimator.ParametersEstimator.compute_state_res_time_for_node"> |
|
||||||
<em class="property">static </em><code class="sig-name descname">compute_state_res_time_for_node</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">times</span><span class="p">:</span> <span class="n">numpy.ndarray</span></em>, <em class="sig-param"><span class="n">trajectory</span><span class="p">:</span> <span class="n">numpy.ndarray</span></em>, <em class="sig-param"><span class="n">cols_filter</span><span class="p">:</span> <span class="n">numpy.ndarray</span></em>, <em class="sig-param"><span class="n">scalar_indexes_struct</span><span class="p">:</span> <span class="n">numpy.ndarray</span></em>, <em class="sig-param"><span class="n">T</span><span class="p">:</span> <span class="n">numpy.ndarray</span></em><span class="sig-paren">)</span> → None<a class="headerlink" href="#PyCTBN.PyCTBN.estimators.parameters_estimator.ParametersEstimator.compute_state_res_time_for_node" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Compute the state residence times for a node and fill the matrix <code class="docutils literal notranslate"><span class="pre">T</span></code> with the results</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><ul class="simple"> |
|
||||||
<li><p><strong>node_indx</strong> (<em>int</em>) – the index of the node</p></li> |
|
||||||
<li><p><strong>times</strong> (<em>numpy.array</em>) – the times deltas vector</p></li> |
|
||||||
<li><p><strong>trajectory</strong> (<em>numpy.ndArray</em>) – the trajectory</p></li> |
|
||||||
<li><p><strong>cols_filter</strong> (<em>numpy.array</em>) – the columns filtering structure</p></li> |
|
||||||
<li><p><strong>scalar_indexes_struct</strong> (<em>numpy.array</em>) – the indexing structure</p></li> |
|
||||||
<li><p><strong>T</strong> (<em>numpy.ndArray</em>) – the state residence times vectors</p></li> |
|
||||||
</ul> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.estimators.parameters_estimator.ParametersEstimator.compute_state_transitions_for_a_node"> |
|
||||||
<em class="property">static </em><code class="sig-name descname">compute_state_transitions_for_a_node</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">node_indx</span><span class="p">:</span> <span class="n">int</span></em>, <em class="sig-param"><span class="n">trajectory</span><span class="p">:</span> <span class="n">numpy.ndarray</span></em>, <em class="sig-param"><span class="n">cols_filter</span><span class="p">:</span> <span class="n">numpy.ndarray</span></em>, <em class="sig-param"><span class="n">scalar_indexing</span><span class="p">:</span> <span class="n">numpy.ndarray</span></em>, <em class="sig-param"><span class="n">M</span><span class="p">:</span> <span class="n">numpy.ndarray</span></em><span class="sig-paren">)</span> → None<a class="headerlink" href="#PyCTBN.PyCTBN.estimators.parameters_estimator.ParametersEstimator.compute_state_transitions_for_a_node" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Compute the state residence times for a node and fill the matrices <code class="docutils literal notranslate"><span class="pre">M</span></code> with the results.</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><ul class="simple"> |
|
||||||
<li><p><strong>node_indx</strong> (<em>int</em>) – the index of the node</p></li> |
|
||||||
<li><p><strong>trajectory</strong> (<em>numpy.ndArray</em>) – the trajectory</p></li> |
|
||||||
<li><p><strong>cols_filter</strong> (<em>numpy.array</em>) – the columns filtering structure</p></li> |
|
||||||
<li><p><strong>scalar_indexing</strong> (<em>numpy.array</em>) – the indexing structure</p></li> |
|
||||||
<li><p><strong>M</strong> (<em>numpy.ndArray</em>) – the state transitions matrices</p></li> |
|
||||||
</ul> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.estimators.parameters_estimator.ParametersEstimator.fast_init"> |
|
||||||
<code class="sig-name descname">fast_init</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">node_id</span><span class="p">:</span> <span class="n">str</span></em><span class="sig-paren">)</span> → None<a class="headerlink" href="#PyCTBN.PyCTBN.estimators.parameters_estimator.ParametersEstimator.fast_init" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Initializes all the necessary structures for the parameters estimation for the node <code class="docutils literal notranslate"><span class="pre">node_id</span></code>.</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><p><strong>node_id</strong> (<em>string</em>) – the node label</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
</section> |
|
||||||
<section id="module-PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator"> |
|
||||||
<span id="pyctbn-pyctbn-estimators-structure-constraint-based-estimator-module"></span><h2>PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator module<a class="headerlink" href="#module-PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator" title="Permalink to this headline">¶</a></h2> |
|
||||||
<dl class="py class"> |
|
||||||
<dt id="PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator"> |
|
||||||
<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.</code><code class="sig-name descname">StructureConstraintBasedEstimator</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">sample_path</span><span class="p">:</span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath" title="PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath">PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath</a></span></em>, <em class="sig-param"><span class="n">exp_test_alfa</span><span class="p">:</span> <span class="n">float</span></em>, <em class="sig-param"><span class="n">chi_test_alfa</span><span class="p">:</span> <span class="n">float</span></em>, <em class="sig-param"><span class="n">known_edges</span><span class="p">:</span> <span class="n">List</span> <span class="o">=</span> <span class="default_value">[]</span></em>, <em class="sig-param"><span class="n">thumb_threshold</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">25</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Bases: <a class="reference internal" href="#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator" title="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator"><code class="xref py py-class docutils literal notranslate"><span class="pre">PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator</span></code></a></p> |
|
||||||
<p>Has the task of estimating the network structure given the trajectories in samplepath by using a constraint-based approach.</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><ul class="simple"> |
|
||||||
<li><p><strong>sample_path</strong> (<a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath" title="PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath"><em>SamplePath</em></a>) – the _sample_path object containing the trajectories and the real structure</p></li> |
|
||||||
<li><p><strong>exp_test_alfa</strong> (<em>float</em>) – the significance level for the exponential Hp test</p></li> |
|
||||||
<li><p><strong>chi_test_alfa</strong> (<em>float</em>) – the significance level for the chi Hp test</p></li> |
|
||||||
<li><p><strong>known_edges</strong> (<em>List</em>) – the prior known edges in the net structure if present</p></li> |
|
||||||
<li><p><strong>thumb_threshold</strong> (<em>int</em>) – the threshold value to consider a valid independence test</p></li> |
|
||||||
</ul> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">_nodes</dt> |
|
||||||
<dd class="field-even"><p>the nodes labels</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-odd">_nodes_vals</dt> |
|
||||||
<dd class="field-odd"><p>the nodes cardinalities</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">_nodes_indxs</dt> |
|
||||||
<dd class="field-even"><p>the nodes indexes</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-odd">_complete_graph</dt> |
|
||||||
<dd class="field-odd"><p>the complete directed graph built using the nodes labels in <code class="docutils literal notranslate"><span class="pre">_nodes</span></code></p> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">_cache</dt> |
|
||||||
<dd class="field-even"><p>the Cache object</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.complete_test"> |
|
||||||
<code class="sig-name descname">complete_test</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">test_parent</span><span class="p">:</span> <span class="n">str</span></em>, <em class="sig-param"><span class="n">test_child</span><span class="p">:</span> <span class="n">str</span></em>, <em class="sig-param"><span class="n">parent_set</span><span class="p">:</span> <span class="n">List</span></em>, <em class="sig-param"><span class="n">child_states_numb</span><span class="p">:</span> <span class="n">int</span></em>, <em class="sig-param"><span class="n">tot_vars_count</span><span class="p">:</span> <span class="n">int</span></em>, <em class="sig-param"><span class="n">parent_indx</span></em>, <em class="sig-param"><span class="n">child_indx</span></em><span class="sig-paren">)</span> → bool<a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.complete_test" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Performs a complete independence test on the directed graphs G1 = {test_child U parent_set} |
|
||||||
G2 = {G1 U test_parent} (added as an additional parent of the test_child). |
|
||||||
Generates all the necessary structures and datas to perform the tests.</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><ul class="simple"> |
|
||||||
<li><p><strong>test_parent</strong> (<em>string</em>) – the node label of the test parent</p></li> |
|
||||||
<li><p><strong>test_child</strong> (<em>string</em>) – the node label of the child</p></li> |
|
||||||
<li><p><strong>parent_set</strong> (<em>List</em>) – the common parent set</p></li> |
|
||||||
<li><p><strong>child_states_numb</strong> (<em>int</em>) – the cardinality of the <code class="docutils literal notranslate"><span class="pre">test_child</span></code></p></li> |
|
||||||
<li><p><strong>tot_vars_count</strong> (<em>int</em>) – the total number of variables in the net</p></li> |
|
||||||
</ul> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">Returns</dt> |
|
||||||
<dd class="field-even"><p>True iff test_child and test_parent are independent given the sep_set parent_set. False otherwise</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-odd">Return type</dt> |
|
||||||
<dd class="field-odd"><p>bool</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.compute_thumb_value"> |
|
||||||
<code class="sig-name descname">compute_thumb_value</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">parent_val</span></em>, <em class="sig-param"><span class="n">child_val</span></em>, <em class="sig-param"><span class="n">parent_set_vals</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.compute_thumb_value" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Compute the value to test against the thumb_threshold.</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><ul class="simple"> |
|
||||||
<li><p><strong>parent_val</strong> (<em>int</em>) – test parent’s variable cardinality</p></li> |
|
||||||
<li><p><strong>child_val</strong> (<em>int</em>) – test child’s variable cardinality</p></li> |
|
||||||
<li><p><strong>parent_set_vals</strong> (<em>List</em>) – the cardinalities of the nodes in the current sep-set</p></li> |
|
||||||
</ul> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">Returns</dt> |
|
||||||
<dd class="field-even"><p>the thumb value for the current independence test</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-odd">Return type</dt> |
|
||||||
<dd class="field-odd"><p>int</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.ctpc_algorithm"> |
|
||||||
<code class="sig-name descname">ctpc_algorithm</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">disable_multiprocessing</span><span class="p">:</span> <span class="n">bool</span> <span class="o">=</span> <span class="default_value">False</span></em>, <em class="sig-param"><span class="n">processes_number</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">None</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.ctpc_algorithm" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Compute the CTPC algorithm over the entire net.</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><ul class="simple"> |
|
||||||
<li><p><strong>disable_multiprocessing</strong> (<em>Boolean</em><em>, </em><em>optional</em>) – true if you desire to disable the multiprocessing operations, default to False</p></li> |
|
||||||
<li><p><strong>processes_number</strong> – if disable_multiprocessing is false indicates</p></li> |
|
||||||
</ul> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
<p>the maximum number of process; if None it will be automatically set, default to None |
|
||||||
:type processes_number: int, optional</p> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.estimate_structure"> |
|
||||||
<code class="sig-name descname">estimate_structure</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">disable_multiprocessing</span><span class="p">:</span> <span class="n">bool</span> <span class="o">=</span> <span class="default_value">False</span></em>, <em class="sig-param"><span class="n">processes_number</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">None</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.estimate_structure" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Compute the constraint-based algorithm to find the optimal structure</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><ul class="simple"> |
|
||||||
<li><p><strong>disable_multiprocessing</strong> (<em>Boolean</em><em>, </em><em>optional</em>) – true if you desire to disable the multiprocessing operations, default to False</p></li> |
|
||||||
<li><p><strong>processes_number</strong> – if disable_multiprocessing is false indicates</p></li> |
|
||||||
</ul> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
<p>the maximum number of process; if None it will be automatically set, default to None |
|
||||||
:type processes_number: int, optional</p> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.independence_test"> |
|
||||||
<code class="sig-name descname">independence_test</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">child_states_numb</span><span class="p">:</span> <span class="n">int</span></em>, <em class="sig-param"><span class="n">cim1</span><span class="p">:</span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix" title="PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix">PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix</a></span></em>, <em class="sig-param"><span class="n">cim2</span><span class="p">:</span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix" title="PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix">PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix</a></span></em>, <em class="sig-param"><span class="n">thumb_value</span><span class="p">:</span> <span class="n">float</span></em>, <em class="sig-param"><span class="n">parent_indx</span></em>, <em class="sig-param"><span class="n">child_indx</span></em><span class="sig-paren">)</span> → bool<a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.independence_test" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Compute the actual independence test using two cims. |
|
||||||
It is performed first the exponential test and if the null hypothesis is not rejected, |
|
||||||
it is performed also the chi_test.</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><ul class="simple"> |
|
||||||
<li><p><strong>child_states_numb</strong> (<em>int</em>) – the cardinality of the test child</p></li> |
|
||||||
<li><p><strong>cim1</strong> (<a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix" title="PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix"><em>ConditionalIntensityMatrix</em></a>) – a cim belonging to the graph without test parent</p></li> |
|
||||||
<li><p><strong>cim2</strong> (<a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix" title="PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix"><em>ConditionalIntensityMatrix</em></a>) – a cim belonging to the graph with test parent</p></li> |
|
||||||
</ul> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">Returns</dt> |
|
||||||
<dd class="field-even"><p>True iff both tests do NOT reject the null hypothesis of independence. False otherwise.</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-odd">Return type</dt> |
|
||||||
<dd class="field-odd"><p>bool</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.one_iteration_of_CTPC_algorithm"> |
|
||||||
<code class="sig-name descname">one_iteration_of_CTPC_algorithm</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">var_id</span><span class="p">:</span> <span class="n">str</span></em>, <em class="sig-param"><span class="n">tot_vars_count</span><span class="p">:</span> <span class="n">int</span></em><span class="sig-paren">)</span> → List<a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.one_iteration_of_CTPC_algorithm" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Performs an iteration of the CTPC algorithm using the node <code class="docutils literal notranslate"><span class="pre">var_id</span></code> as <code class="docutils literal notranslate"><span class="pre">test_child</span></code>.</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><p><strong>var_id</strong> (<em>string</em>) – the node label of the test child</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
</section> |
|
||||||
<section id="module-PyCTBN.PyCTBN.estimators.structure_estimator"> |
|
||||||
<span id="pyctbn-pyctbn-estimators-structure-estimator-module"></span><h2>PyCTBN.PyCTBN.estimators.structure_estimator module<a class="headerlink" href="#module-PyCTBN.PyCTBN.estimators.structure_estimator" title="Permalink to this headline">¶</a></h2> |
|
||||||
<dl class="py class"> |
|
||||||
<dt id="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator"> |
|
||||||
<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.PyCTBN.estimators.structure_estimator.</code><code class="sig-name descname">StructureEstimator</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">sample_path</span><span class="p">:</span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath" title="PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath">PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath</a></span></em>, <em class="sig-param"><span class="n">known_edges</span><span class="p">:</span> <span class="n">List</span> <span class="o">=</span> <span class="default_value">None</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></p> |
|
||||||
<p>Has the task of estimating the network structure given the trajectories in <code class="docutils literal notranslate"><span class="pre">samplepath</span></code>.</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><ul class="simple"> |
|
||||||
<li><p><strong>sample_path</strong> (<a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath" title="PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath"><em>SamplePath</em></a>) – the _sample_path object containing the trajectories and the real structure</p></li> |
|
||||||
<li><p><strong>known_edges</strong> (<em>List</em>) – the prior known edges in the net structure if present</p></li> |
|
||||||
</ul> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">_nodes</dt> |
|
||||||
<dd class="field-even"><p>the nodes labels</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-odd">_nodes_vals</dt> |
|
||||||
<dd class="field-odd"><p>the nodes cardinalities</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">_nodes_indxs</dt> |
|
||||||
<dd class="field-even"><p>the nodes indexes</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-odd">_complete_graph</dt> |
|
||||||
<dd class="field-odd"><p>the complete directed graph built using the nodes labels in <code class="docutils literal notranslate"><span class="pre">_nodes</span></code></p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.adjacency_matrix"> |
|
||||||
<code class="sig-name descname">adjacency_matrix</code><span class="sig-paren">(</span><span class="sig-paren">)</span> → numpy.ndarray<a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.adjacency_matrix" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Converts the estimated structure <code class="docutils literal notranslate"><span class="pre">_complete_graph</span></code> to a boolean adjacency matrix representation.</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Returns</dt> |
|
||||||
<dd class="field-odd"><p>The adjacency matrix of the graph <code class="docutils literal notranslate"><span class="pre">_complete_graph</span></code></p> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">Return type</dt> |
|
||||||
<dd class="field-even"><p>numpy.ndArray</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.build_complete_graph"> |
|
||||||
<em class="property">static </em><code class="sig-name descname">build_complete_graph</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">node_ids</span><span class="p">:</span> <span class="n">List</span></em><span class="sig-paren">)</span> → networkx.classes.digraph.DiGraph<a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.build_complete_graph" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Builds a complete directed graph (no self loops) given the nodes labels in the list <code class="docutils literal notranslate"><span class="pre">node_ids</span></code>:</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><p><strong>node_ids</strong> (<em>List</em>) – the list of nodes labels</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">Returns</dt> |
|
||||||
<dd class="field-even"><p>a complete Digraph Object</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-odd">Return type</dt> |
|
||||||
<dd class="field-odd"><p>networkx.DiGraph</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.build_removable_edges_matrix"> |
|
||||||
<code class="sig-name descname">build_removable_edges_matrix</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">known_edges</span><span class="p">:</span> <span class="n">List</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.build_removable_edges_matrix" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Builds a boolean matrix who shows if a edge could be removed or not, based on prior knowledge given:</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><p><strong>known_edges</strong> (<em>List</em>) – the list of nodes labels</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">Returns</dt> |
|
||||||
<dd class="field-even"><p>a boolean matrix</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-odd">Return type</dt> |
|
||||||
<dd class="field-odd"><p>np.ndarray</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.estimate_structure"> |
|
||||||
<em class="property">abstract </em><code class="sig-name descname">estimate_structure</code><span class="sig-paren">(</span><span class="sig-paren">)</span> → List<a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.estimate_structure" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Abstract method to estimate the structure</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Returns</dt> |
|
||||||
<dd class="field-odd"><p>List of estimated edges</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">Return type</dt> |
|
||||||
<dd class="field-even"><p>Typing.List</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.generate_possible_sub_sets_of_size"> |
|
||||||
<em class="property">static </em><code class="sig-name descname">generate_possible_sub_sets_of_size</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">u</span><span class="p">:</span> <span class="n">List</span></em>, <em class="sig-param"><span class="n">size</span><span class="p">:</span> <span class="n">int</span></em>, <em class="sig-param"><span class="n">parent_label</span><span class="p">:</span> <span class="n">str</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.generate_possible_sub_sets_of_size" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Creates a list containing all possible subsets of the list <code class="docutils literal notranslate"><span class="pre">u</span></code> of size <code class="docutils literal notranslate"><span class="pre">size</span></code>, |
|
||||||
that do not contains a the node identified by <code class="docutils literal notranslate"><span class="pre">parent_label</span></code>.</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><ul class="simple"> |
|
||||||
<li><p><strong>u</strong> (<em>List</em>) – the list of nodes</p></li> |
|
||||||
<li><p><strong>size</strong> (<em>int</em>) – the size of the subsets</p></li> |
|
||||||
<li><p><strong>parent_label</strong> (<em>string</em>) – the node to exclude in the subsets generation</p></li> |
|
||||||
</ul> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">Returns</dt> |
|
||||||
<dd class="field-even"><p>an Iterator Object containing a list of lists</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-odd">Return type</dt> |
|
||||||
<dd class="field-odd"><p>Iterator</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.save_plot_estimated_structure_graph"> |
|
||||||
<code class="sig-name descname">save_plot_estimated_structure_graph</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">file_path</span><span class="p">:</span> <span class="n">str</span></em><span class="sig-paren">)</span> → None<a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.save_plot_estimated_structure_graph" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Plot the estimated structure in a graphical model style, use .png extension.</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><p><strong>file_path</strong> – path to save the file to</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">Type</dt> |
|
||||||
<dd class="field-even"><p>string</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.save_results"> |
|
||||||
<code class="sig-name descname">save_results</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">file_path</span><span class="p">:</span> <span class="n">str</span></em><span class="sig-paren">)</span> → None<a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.save_results" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Save the estimated Structure to a .json file in file_path.</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><p><strong>file_path</strong> (<em>string</em>) – the path including the file name with .json extension</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.spurious_edges"> |
|
||||||
<code class="sig-name descname">spurious_edges</code><span class="sig-paren">(</span><span class="sig-paren">)</span> → List<a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.spurious_edges" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><dl class="simple"> |
|
||||||
<dt>Return the spurious edges present in the estimated structure, if a prior net structure is present in</dt><dd><p><code class="docutils literal notranslate"><span class="pre">_sample_path.structure</span></code>.</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Returns</dt> |
|
||||||
<dd class="field-odd"><p>A list containing the spurious edges</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">Return type</dt> |
|
||||||
<dd class="field-even"><p>List</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
</section> |
|
||||||
<section id="module-PyCTBN.PyCTBN.estimators.structure_score_based_estimator"> |
|
||||||
<span id="pyctbn-pyctbn-estimators-structure-score-based-estimator-module"></span><h2>PyCTBN.PyCTBN.estimators.structure_score_based_estimator module<a class="headerlink" href="#module-PyCTBN.PyCTBN.estimators.structure_score_based_estimator" title="Permalink to this headline">¶</a></h2> |
|
||||||
<dl class="py class"> |
|
||||||
<dt id="PyCTBN.PyCTBN.estimators.structure_score_based_estimator.StructureScoreBasedEstimator"> |
|
||||||
<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.PyCTBN.estimators.structure_score_based_estimator.</code><code class="sig-name descname">StructureScoreBasedEstimator</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">sample_path</span><span class="p">:</span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath" title="PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath">PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath</a></span></em>, <em class="sig-param"><span class="n">tau_xu</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">0.1</span></em>, <em class="sig-param"><span class="n">alpha_xu</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">1</span></em>, <em class="sig-param"><span class="n">known_edges</span><span class="p">:</span> <span class="n">List</span> <span class="o">=</span> <span class="default_value">[]</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_score_based_estimator.StructureScoreBasedEstimator" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Bases: <a class="reference internal" href="#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator" title="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator"><code class="xref py py-class docutils literal notranslate"><span class="pre">PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator</span></code></a></p> |
|
||||||
<p>Has the task of estimating the network structure given the trajectories in samplepath by |
|
||||||
using a score based approach and differt kinds of optimization algorithms.</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><ul class="simple"> |
|
||||||
<li><p><strong>sample_path</strong> (<a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath" title="PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath"><em>SamplePath</em></a>) – the _sample_path object containing the trajectories and the real structure</p></li> |
|
||||||
<li><p><strong>tau_xu</strong> (<em>float</em><em>, </em><em>optional</em>) – hyperparameter over the CTBN’s q parameters, default to 0.1</p></li> |
|
||||||
<li><p><strong>alpha_xu</strong> (<em>float</em><em>, </em><em>optional</em>) – hyperparameter over the CTBN’s q parameters, default to 1</p></li> |
|
||||||
<li><p><strong>known_edges</strong> (<em>List</em><em>, </em><em>optional</em>) – List of known edges, default to []</p></li> |
|
||||||
</ul> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.estimators.structure_score_based_estimator.StructureScoreBasedEstimator.estimate_parents"> |
|
||||||
<code class="sig-name descname">estimate_parents</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">node_id</span><span class="p">:</span> <span class="n">str</span></em>, <em class="sig-param"><span class="n">max_parents</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">None</span></em>, <em class="sig-param"><span class="n">iterations_number</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">40</span></em>, <em class="sig-param"><span class="n">patience</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">10</span></em>, <em class="sig-param"><span class="n">tabu_length</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">None</span></em>, <em class="sig-param"><span class="n">tabu_rules_duration</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">5</span></em>, <em class="sig-param"><span class="n">optimizer</span><span class="p">:</span> <span class="n">str</span> <span class="o">=</span> <span class="default_value">'hill'</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_score_based_estimator.StructureScoreBasedEstimator.estimate_parents" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Use the FamScore of a node in order to find the best parent nodes</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><ul class="simple"> |
|
||||||
<li><p><strong>node_id</strong> (<em>string</em>) – current node’s id</p></li> |
|
||||||
<li><p><strong>max_parents</strong> (<em>int</em><em>, </em><em>optional</em>) – maximum number of parents for each variable. If None, disabled, default to None</p></li> |
|
||||||
<li><p><strong>iterations_number</strong> (<em>int</em><em>, </em><em>optional</em>) – maximum number of optimization algorithm’s iteration, default to 40</p></li> |
|
||||||
<li><p><strong>patience</strong> (<em>int</em><em>, </em><em>optional</em>) – number of iteration without any improvement before to stop the search.If None, disabled, default to None</p></li> |
|
||||||
<li><p><strong>tabu_length</strong> (<em>int</em><em>, </em><em>optional</em>) – maximum lenght of the data structures used in the optimization process, default to None</p></li> |
|
||||||
<li><p><strong>tabu_rules_duration</strong> (<em>int</em><em>, </em><em>optional</em>) – number of iterations in which each rule keeps its value, default to None</p></li> |
|
||||||
<li><p><strong>optimizer</strong> (<em>string</em><em>, </em><em>optional</em>) – name of the optimizer algorithm. Possible values: ‘hill’ (Hill climbing),’tabu’ (tabu search), defualt to ‘tabu’</p></li> |
|
||||||
</ul> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">Returns</dt> |
|
||||||
<dd class="field-even"><p>A list of the best edges for the currente node</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-odd">Return type</dt> |
|
||||||
<dd class="field-odd"><p>List</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.estimators.structure_score_based_estimator.StructureScoreBasedEstimator.estimate_structure"> |
|
||||||
<code class="sig-name descname">estimate_structure</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">max_parents</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">None</span></em>, <em class="sig-param"><span class="n">iterations_number</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">40</span></em>, <em class="sig-param"><span class="n">patience</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">None</span></em>, <em class="sig-param"><span class="n">tabu_length</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">None</span></em>, <em class="sig-param"><span class="n">tabu_rules_duration</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">None</span></em>, <em class="sig-param"><span class="n">optimizer</span><span class="p">:</span> <span class="n">str</span> <span class="o">=</span> <span class="default_value">'tabu'</span></em>, <em class="sig-param"><span class="n">disable_multiprocessing</span><span class="p">:</span> <span class="n">bool</span> <span class="o">=</span> <span class="default_value">False</span></em>, <em class="sig-param"><span class="n">processes_number</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">None</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_score_based_estimator.StructureScoreBasedEstimator.estimate_structure" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Compute the score-based algorithm to find the optimal structure</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><ul class="simple"> |
|
||||||
<li><p><strong>max_parents</strong> (<em>int</em><em>, </em><em>optional</em>) – maximum number of parents for each variable. If None, disabled, default to None</p></li> |
|
||||||
<li><p><strong>iterations_number</strong> (<em>int</em><em>, </em><em>optional</em>) – maximum number of optimization algorithm’s iteration, default to 40</p></li> |
|
||||||
<li><p><strong>patience</strong> (<em>int</em><em>, </em><em>optional</em>) – number of iteration without any improvement before to stop the search.If None, disabled, default to None</p></li> |
|
||||||
<li><p><strong>tabu_length</strong> (<em>int</em><em>, </em><em>optional</em>) – maximum lenght of the data structures used in the optimization process, default to None</p></li> |
|
||||||
<li><p><strong>tabu_rules_duration</strong> (<em>int</em><em>, </em><em>optional</em>) – number of iterations in which each rule keeps its value, default to None</p></li> |
|
||||||
<li><p><strong>optimizer</strong> (<em>string</em><em>, </em><em>optional</em>) – name of the optimizer algorithm. Possible values: ‘hill’ (Hill climbing),’tabu’ (tabu search), defualt to ‘tabu’</p></li> |
|
||||||
<li><p><strong>disable_multiprocessing</strong> (<em>Boolean</em><em>, </em><em>optional</em>) – true if you desire to disable the multiprocessing operations, default to False</p></li> |
|
||||||
<li><p><strong>processes_number</strong> – if disable_multiprocessing is false indicates</p></li> |
|
||||||
</ul> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
<p>the maximum number of process; if None it will be automatically set, default to None |
|
||||||
:type processes_number: int, optional</p> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.estimators.structure_score_based_estimator.StructureScoreBasedEstimator.get_score_from_graph"> |
|
||||||
<code class="sig-name descname">get_score_from_graph</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">graph</span><span class="p">:</span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph" title="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph">PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph</a></span></em>, <em class="sig-param"><span class="n">node_id</span><span class="p">:</span> <span class="n">str</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_score_based_estimator.StructureScoreBasedEstimator.get_score_from_graph" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Get the FamScore of a node</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><ul class="simple"> |
|
||||||
<li><p><strong>node_id</strong> (<em>string</em>) – current node’s id</p></li> |
|
||||||
<li><p><strong>graph</strong> (<em>class:'NetworkGraph'</em>) – current graph to be computed</p></li> |
|
||||||
</ul> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">Returns</dt> |
|
||||||
<dd class="field-even"><p>The FamSCore for this graph structure</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-odd">Return type</dt> |
|
||||||
<dd class="field-odd"><p>float</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
</section> |
|
||||||
<section id="module-PyCTBN.PyCTBN.estimators"> |
|
||||||
<span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-PyCTBN.PyCTBN.estimators" title="Permalink to this headline">¶</a></h2> |
|
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<li class="toctree-l2 current"><a class="reference internal" href="PyCTBN.PyCTBN.html#subpackages">Subpackages</a></li> |
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<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.html#module-PyCTBN.PyCTBN">Module contents</a></li> |
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<li class="toctree-l2"><a class="reference internal" href="examples.html#implementing-your-own-data-importer">Implementing your own data importer</a></li> |
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<li class="toctree-l2"><a class="reference internal" href="examples.html#parameters-estimation-example">Parameters Estimation Example</a></li> |
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<li class="toctree-l2"><a class="reference internal" href="examples.html#structure-estimation-example">Structure Estimation Example</a></li> |
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<section id="pyctbn-pyctbn-optimizers-package"> |
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||||||
<h1>PyCTBN.PyCTBN.optimizers package<a class="headerlink" href="#pyctbn-pyctbn-optimizers-package" title="Permalink to this headline">¶</a></h1> |
|
||||||
<section id="submodules"> |
|
||||||
<h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this headline">¶</a></h2> |
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||||||
</section> |
|
||||||
<section id="module-PyCTBN.PyCTBN.optimizers.constraint_based_optimizer"> |
|
||||||
<span id="pyctbn-pyctbn-optimizers-constraint-based-optimizer-module"></span><h2>PyCTBN.PyCTBN.optimizers.constraint_based_optimizer module<a class="headerlink" href="#module-PyCTBN.PyCTBN.optimizers.constraint_based_optimizer" title="Permalink to this headline">¶</a></h2> |
|
||||||
<dl class="py class"> |
|
||||||
<dt id="PyCTBN.PyCTBN.optimizers.constraint_based_optimizer.ConstraintBasedOptimizer"> |
|
||||||
<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.PyCTBN.optimizers.constraint_based_optimizer.</code><code class="sig-name descname">ConstraintBasedOptimizer</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">node_id</span><span class="p">:</span> <span class="n">str</span></em>, <em class="sig-param"><span class="n">structure_estimator</span><span class="p">:</span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator" title="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator">PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator</a></span></em>, <em class="sig-param"><span class="n">tot_vars_count</span><span class="p">:</span> <span class="n">int</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.optimizers.constraint_based_optimizer.ConstraintBasedOptimizer" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Bases: <a class="reference internal" href="#PyCTBN.PyCTBN.optimizers.optimizer.Optimizer" title="PyCTBN.PyCTBN.optimizers.optimizer.Optimizer"><code class="xref py py-class docutils literal notranslate"><span class="pre">PyCTBN.PyCTBN.optimizers.optimizer.Optimizer</span></code></a></p> |
|
||||||
<p>Optimizer class that implement a CTPC Algorithm</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><ul class="simple"> |
|
||||||
<li><p><strong>node_id</strong> (<em>string</em>) – current node’s id</p></li> |
|
||||||
<li><p><strong>structure_estimator</strong> (<em>class:'StructureEstimator'</em>) – a structure estimator object with the information about the net</p></li> |
|
||||||
<li><p><strong>tot_vars_count</strong> (<em>int</em>) – number of variables in the dataset</p></li> |
|
||||||
</ul> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.optimizers.constraint_based_optimizer.ConstraintBasedOptimizer.optimize_structure"> |
|
||||||
<code class="sig-name descname">optimize_structure</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.optimizers.constraint_based_optimizer.ConstraintBasedOptimizer.optimize_structure" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Compute Optimization process for a structure_estimator by using a CTPC Algorithm</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Returns</dt> |
|
||||||
<dd class="field-odd"><p>the estimated structure for the node</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">Return type</dt> |
|
||||||
<dd class="field-even"><p>List</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
</section> |
|
||||||
<section id="module-PyCTBN.PyCTBN.optimizers.hill_climbing_search"> |
|
||||||
<span id="pyctbn-pyctbn-optimizers-hill-climbing-search-module"></span><h2>PyCTBN.PyCTBN.optimizers.hill_climbing_search module<a class="headerlink" href="#module-PyCTBN.PyCTBN.optimizers.hill_climbing_search" title="Permalink to this headline">¶</a></h2> |
|
||||||
<dl class="py class"> |
|
||||||
<dt id="PyCTBN.PyCTBN.optimizers.hill_climbing_search.HillClimbing"> |
|
||||||
<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.PyCTBN.optimizers.hill_climbing_search.</code><code class="sig-name descname">HillClimbing</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">node_id</span><span class="p">:</span> <span class="n">str</span></em>, <em class="sig-param"><span class="n">structure_estimator</span><span class="p">:</span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator" title="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator">PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator</a></span></em>, <em class="sig-param"><span class="n">max_parents</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">None</span></em>, <em class="sig-param"><span class="n">iterations_number</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">40</span></em>, <em class="sig-param"><span class="n">patience</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">None</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.optimizers.hill_climbing_search.HillClimbing" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Bases: <a class="reference internal" href="#PyCTBN.PyCTBN.optimizers.optimizer.Optimizer" title="PyCTBN.PyCTBN.optimizers.optimizer.Optimizer"><code class="xref py py-class docutils literal notranslate"><span class="pre">PyCTBN.PyCTBN.optimizers.optimizer.Optimizer</span></code></a></p> |
|
||||||
<p>Optimizer class that implement Hill Climbing Search</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><ul class="simple"> |
|
||||||
<li><p><strong>node_id</strong> (<em>string</em>) – current node’s id</p></li> |
|
||||||
<li><p><strong>structure_estimator</strong> (<em>class:'StructureEstimator'</em>) – a structure estimator object with the information about the net</p></li> |
|
||||||
<li><p><strong>max_parents</strong> (<em>int</em><em>, </em><em>optional</em>) – maximum number of parents for each variable. If None, disabled, default to None</p></li> |
|
||||||
<li><p><strong>iterations_number</strong> (<em>int</em><em>, </em><em>optional</em>) – maximum number of optimization algorithm’s iteration, default to 40</p></li> |
|
||||||
<li><p><strong>patience</strong> (<em>int</em><em>, </em><em>optional</em>) – number of iteration without any improvement before to stop the search.If None, disabled, default to None</p></li> |
|
||||||
</ul> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.optimizers.hill_climbing_search.HillClimbing.optimize_structure"> |
|
||||||
<code class="sig-name descname">optimize_structure</code><span class="sig-paren">(</span><span class="sig-paren">)</span> → List<a class="headerlink" href="#PyCTBN.PyCTBN.optimizers.hill_climbing_search.HillClimbing.optimize_structure" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Compute Optimization process for a structure_estimator by using a Hill Climbing Algorithm</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Returns</dt> |
|
||||||
<dd class="field-odd"><p>the estimated structure for the node</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">Return type</dt> |
|
||||||
<dd class="field-even"><p>List</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
</section> |
|
||||||
<section id="module-PyCTBN.PyCTBN.optimizers.optimizer"> |
|
||||||
<span id="pyctbn-pyctbn-optimizers-optimizer-module"></span><h2>PyCTBN.PyCTBN.optimizers.optimizer module<a class="headerlink" href="#module-PyCTBN.PyCTBN.optimizers.optimizer" title="Permalink to this headline">¶</a></h2> |
|
||||||
<dl class="py class"> |
|
||||||
<dt id="PyCTBN.PyCTBN.optimizers.optimizer.Optimizer"> |
|
||||||
<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.PyCTBN.optimizers.optimizer.</code><code class="sig-name descname">Optimizer</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">node_id</span><span class="p">:</span> <span class="n">str</span></em>, <em class="sig-param"><span class="n">structure_estimator</span><span class="p">:</span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator" title="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator">PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator</a></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.optimizers.optimizer.Optimizer" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">abc.ABC</span></code></p> |
|
||||||
<p>Interface class for all the optimizer’s child PyCTBN</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><ul class="simple"> |
|
||||||
<li><p><strong>node_id</strong> (<em>string</em>) – the node label</p></li> |
|
||||||
<li><p><strong>structure_estimator</strong> (<em>class:'StructureEstimator'</em>) – A structureEstimator Object to predict the structure</p></li> |
|
||||||
</ul> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.optimizers.optimizer.Optimizer.optimize_structure"> |
|
||||||
<em class="property">abstract </em><code class="sig-name descname">optimize_structure</code><span class="sig-paren">(</span><span class="sig-paren">)</span> → List<a class="headerlink" href="#PyCTBN.PyCTBN.optimizers.optimizer.Optimizer.optimize_structure" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Compute Optimization process for a structure_estimator</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Returns</dt> |
|
||||||
<dd class="field-odd"><p>the estimated structure for the node</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">Return type</dt> |
|
||||||
<dd class="field-even"><p>List</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
</section> |
|
||||||
<section id="module-PyCTBN.PyCTBN.optimizers.tabu_search"> |
|
||||||
<span id="pyctbn-pyctbn-optimizers-tabu-search-module"></span><h2>PyCTBN.PyCTBN.optimizers.tabu_search module<a class="headerlink" href="#module-PyCTBN.PyCTBN.optimizers.tabu_search" title="Permalink to this headline">¶</a></h2> |
|
||||||
<dl class="py class"> |
|
||||||
<dt id="PyCTBN.PyCTBN.optimizers.tabu_search.TabuSearch"> |
|
||||||
<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.PyCTBN.optimizers.tabu_search.</code><code class="sig-name descname">TabuSearch</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">node_id</span><span class="p">:</span> <span class="n">str</span></em>, <em class="sig-param"><span class="n">structure_estimator</span><span class="p">:</span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator" title="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator">PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator</a></span></em>, <em class="sig-param"><span class="n">max_parents</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">None</span></em>, <em class="sig-param"><span class="n">iterations_number</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">40</span></em>, <em class="sig-param"><span class="n">patience</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">None</span></em>, <em class="sig-param"><span class="n">tabu_length</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">None</span></em>, <em class="sig-param"><span class="n">tabu_rules_duration</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.optimizers.tabu_search.TabuSearch" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Bases: <a class="reference internal" href="#PyCTBN.PyCTBN.optimizers.optimizer.Optimizer" title="PyCTBN.PyCTBN.optimizers.optimizer.Optimizer"><code class="xref py py-class docutils literal notranslate"><span class="pre">PyCTBN.PyCTBN.optimizers.optimizer.Optimizer</span></code></a></p> |
|
||||||
<p>Optimizer class that implement Tabu Search</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><ul class="simple"> |
|
||||||
<li><p><strong>node_id</strong> (<em>string</em>) – current node’s id</p></li> |
|
||||||
<li><p><strong>structure_estimator</strong> (<em>class:'StructureEstimator'</em>) – a structure estimator object with the information about the net</p></li> |
|
||||||
<li><p><strong>max_parents</strong> (<em>int</em><em>, </em><em>optional</em>) – maximum number of parents for each variable. If None, disabled, default to None</p></li> |
|
||||||
<li><p><strong>iterations_number</strong> (<em>int</em><em>, </em><em>optional</em>) – maximum number of optimization algorithm’s iteration, default to 40</p></li> |
|
||||||
<li><p><strong>patience</strong> (<em>int</em><em>, </em><em>optional</em>) – number of iteration without any improvement before to stop the search.If None, disabled, default to None</p></li> |
|
||||||
<li><p><strong>tabu_length</strong> (<em>int</em><em>, </em><em>optional</em>) – maximum lenght of the data structures used in the optimization process, default to None</p></li> |
|
||||||
<li><p><strong>tabu_rules_duration</strong> (<em>int</em><em>, </em><em>optional</em>) – number of iterations in which each rule keeps its value, default to None</p></li> |
|
||||||
</ul> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.optimizers.tabu_search.TabuSearch.optimize_structure"> |
|
||||||
<code class="sig-name descname">optimize_structure</code><span class="sig-paren">(</span><span class="sig-paren">)</span> → List<a class="headerlink" href="#PyCTBN.PyCTBN.optimizers.tabu_search.TabuSearch.optimize_structure" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Compute Optimization process for a structure_estimator by using a Hill Climbing Algorithm</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Returns</dt> |
|
||||||
<dd class="field-odd"><p>the estimated structure for the node</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">Return type</dt> |
|
||||||
<dd class="field-even"><p>List</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
</section> |
|
||||||
<section id="module-PyCTBN.PyCTBN.optimizers"> |
|
||||||
<span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-PyCTBN.PyCTBN.optimizers" title="Permalink to this headline">¶</a></h2> |
|
||||||
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<p><span class="caption-text">Contents:</span></p> |
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<ul> |
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<li class="toctree-l1"><a class="reference internal" href="PyCTBN.PyCTBN.html">PyCTBN.PyCTBN package</a><ul> |
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<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.html#subpackages">Subpackages</a></li> |
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<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.html#module-PyCTBN.PyCTBN">Module contents</a></li> |
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<li class="toctree-l1"><a class="reference internal" href="examples.html">Examples</a><ul> |
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<li class="toctree-l2"><a class="reference internal" href="examples.html#installation-usage">Installation/Usage</a></li> |
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<li class="toctree-l2"><a class="reference internal" href="examples.html#implementing-your-own-data-importer">Implementing your own data importer</a></li> |
|
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<li class="toctree-l2"><a class="reference internal" href="examples.html#parameters-estimation-example">Parameters Estimation Example</a></li> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="examples.html#structure-estimation-example">Structure Estimation Example</a></li> |
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<div id="content" class="hfeed entry-container hentry"> |
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<section id="pyctbn-tests-estimators-package"> |
|
||||||
<h1>PyCTBN.tests.estimators package<a class="headerlink" href="#pyctbn-tests-estimators-package" title="Permalink to this headline">¶</a></h1> |
|
||||||
<section id="submodules"> |
|
||||||
<h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this headline">¶</a></h2> |
|
||||||
</section> |
|
||||||
<section id="module-PyCTBN.tests.estimators.test_parameters_estimator"> |
|
||||||
<span id="pyctbn-tests-estimators-test-parameters-estimator-module"></span><h2>PyCTBN.tests.estimators.test_parameters_estimator module<a class="headerlink" href="#module-PyCTBN.tests.estimators.test_parameters_estimator" title="Permalink to this headline">¶</a></h2> |
|
||||||
<dl class="py class"> |
|
||||||
<dt id="PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior"> |
|
||||||
<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.tests.estimators.test_parameters_estimator.</code><code class="sig-name descname">TestParametersEstimatior</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">methodName</span><span class="o">=</span><span class="default_value">'runTest'</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">unittest.case.TestCase</span></code></p> |
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.aux_import_sampled_cims"> |
|
||||||
<code class="sig-name descname">aux_import_sampled_cims</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">cims_label</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.aux_import_sampled_cims" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.cim_equality_test"> |
|
||||||
<code class="sig-name descname">cim_equality_test</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">cim1</span></em>, <em class="sig-param"><span class="n">cim2</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.cim_equality_test" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.equality_of_cims_of_node"> |
|
||||||
<code class="sig-name descname">equality_of_cims_of_node</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">sampled_cims</span></em>, <em class="sig-param"><span class="n">estimated_cims</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.equality_of_cims_of_node" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.setUpClass"> |
|
||||||
<em class="property">classmethod </em><code class="sig-name descname">setUpClass</code><span class="sig-paren">(</span><span class="sig-paren">)</span> → None<a class="headerlink" href="#PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.setUpClass" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Hook method for setting up class fixture before running tests in the class.</p> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.test_compute_parameters_for_node"> |
|
||||||
<code class="sig-name descname">test_compute_parameters_for_node</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.test_compute_parameters_for_node" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.test_fast_init"> |
|
||||||
<code class="sig-name descname">test_fast_init</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.test_fast_init" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
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||||||
|
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||||||
</dd></dl> |
|
||||||
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||||||
</section> |
|
||||||
<section id="module-PyCTBN.tests.estimators.test_structure_constraint_based_estimator"> |
|
||||||
<span id="pyctbn-tests-estimators-test-structure-constraint-based-estimator-module"></span><h2>PyCTBN.tests.estimators.test_structure_constraint_based_estimator module<a class="headerlink" href="#module-PyCTBN.tests.estimators.test_structure_constraint_based_estimator" title="Permalink to this headline">¶</a></h2> |
|
||||||
<dl class="py class"> |
|
||||||
<dt id="PyCTBN.tests.estimators.test_structure_constraint_based_estimator.TestStructureConstraintBasedEstimator"> |
|
||||||
<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.tests.estimators.test_structure_constraint_based_estimator.</code><code class="sig-name descname">TestStructureConstraintBasedEstimator</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">methodName</span><span class="o">=</span><span class="default_value">'runTest'</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_constraint_based_estimator.TestStructureConstraintBasedEstimator" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">unittest.case.TestCase</span></code></p> |
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.estimators.test_structure_constraint_based_estimator.TestStructureConstraintBasedEstimator.setUpClass"> |
|
||||||
<em class="property">classmethod </em><code class="sig-name descname">setUpClass</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_constraint_based_estimator.TestStructureConstraintBasedEstimator.setUpClass" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Hook method for setting up class fixture before running tests in the class.</p> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.estimators.test_structure_constraint_based_estimator.TestStructureConstraintBasedEstimator.test_structure_1"> |
|
||||||
<code class="sig-name descname">test_structure_1</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_constraint_based_estimator.TestStructureConstraintBasedEstimator.test_structure_1" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.estimators.test_structure_constraint_based_estimator.TestStructureConstraintBasedEstimator.test_structure_2"> |
|
||||||
<code class="sig-name descname">test_structure_2</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_constraint_based_estimator.TestStructureConstraintBasedEstimator.test_structure_2" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.estimators.test_structure_constraint_based_estimator.TestStructureConstraintBasedEstimator.test_structure_3"> |
|
||||||
<code class="sig-name descname">test_structure_3</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_constraint_based_estimator.TestStructureConstraintBasedEstimator.test_structure_3" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
</section> |
|
||||||
<section id="module-PyCTBN.tests.estimators.test_structure_estimator"> |
|
||||||
<span id="pyctbn-tests-estimators-test-structure-estimator-module"></span><h2>PyCTBN.tests.estimators.test_structure_estimator module<a class="headerlink" href="#module-PyCTBN.tests.estimators.test_structure_estimator" title="Permalink to this headline">¶</a></h2> |
|
||||||
<dl class="py class"> |
|
||||||
<dt id="PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator"> |
|
||||||
<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.tests.estimators.test_structure_estimator.</code><code class="sig-name descname">TestStructureEstimator</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">methodName</span><span class="o">=</span><span class="default_value">'runTest'</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">unittest.case.TestCase</span></code></p> |
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.setUpClass"> |
|
||||||
<em class="property">classmethod </em><code class="sig-name descname">setUpClass</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.setUpClass" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Hook method for setting up class fixture before running tests in the class.</p> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_adjacency_matrix"> |
|
||||||
<code class="sig-name descname">test_adjacency_matrix</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_adjacency_matrix" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_build_complete_graph"> |
|
||||||
<code class="sig-name descname">test_build_complete_graph</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_build_complete_graph" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_build_removable_edges_matrix"> |
|
||||||
<code class="sig-name descname">test_build_removable_edges_matrix</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_build_removable_edges_matrix" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_generate_possible_sub_sets_of_size"> |
|
||||||
<code class="sig-name descname">test_generate_possible_sub_sets_of_size</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_generate_possible_sub_sets_of_size" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_init"> |
|
||||||
<code class="sig-name descname">test_init</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_init" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_save_plot_estimated_graph"> |
|
||||||
<code class="sig-name descname">test_save_plot_estimated_graph</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_save_plot_estimated_graph" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_save_results"> |
|
||||||
<code class="sig-name descname">test_save_results</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_save_results" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_time"> |
|
||||||
<code class="sig-name descname">test_time</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_time" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
</section> |
|
||||||
<section id="module-PyCTBN.tests.estimators.test_structure_score_based_estimator"> |
|
||||||
<span id="pyctbn-tests-estimators-test-structure-score-based-estimator-module"></span><h2>PyCTBN.tests.estimators.test_structure_score_based_estimator module<a class="headerlink" href="#module-PyCTBN.tests.estimators.test_structure_score_based_estimator" title="Permalink to this headline">¶</a></h2> |
|
||||||
<dl class="py class"> |
|
||||||
<dt id="PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator"> |
|
||||||
<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.tests.estimators.test_structure_score_based_estimator.</code><code class="sig-name descname">TestStructureScoreBasedEstimator</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">methodName</span><span class="o">=</span><span class="default_value">'runTest'</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">unittest.case.TestCase</span></code></p> |
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator.setUpClass"> |
|
||||||
<em class="property">classmethod </em><code class="sig-name descname">setUpClass</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator.setUpClass" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Hook method for setting up class fixture before running tests in the class.</p> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator.test_structure_1"> |
|
||||||
<code class="sig-name descname">test_structure_1</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator.test_structure_1" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator.test_structure_2"> |
|
||||||
<code class="sig-name descname">test_structure_2</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator.test_structure_2" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator.test_structure_3"> |
|
||||||
<code class="sig-name descname">test_structure_3</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator.test_structure_3" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator.test_structure_monoprocesso"> |
|
||||||
<code class="sig-name descname">test_structure_monoprocesso</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator.test_structure_monoprocesso" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
</section> |
|
||||||
<section id="module-PyCTBN.tests.estimators"> |
|
||||||
<span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-PyCTBN.tests.estimators" title="Permalink to this headline">¶</a></h2> |
|
||||||
</section> |
|
||||||
</section> |
|
||||||
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|
||||||
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|
||||||
</div> |
|
||||||
<footer> |
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<div id="content" class="hfeed entry-container hentry"> |
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<section id="pyctbn-tests-optimizers-package"> |
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<h1>PyCTBN.tests.optimizers package<a class="headerlink" href="#pyctbn-tests-optimizers-package" title="Permalink to this headline">¶</a></h1> |
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<section id="submodules"> |
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<h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this headline">¶</a></h2> |
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</section> |
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||||||
<section id="module-PyCTBN.tests.optimizers.test_hill_climbing_search"> |
|
||||||
<span id="pyctbn-tests-optimizers-test-hill-climbing-search-module"></span><h2>PyCTBN.tests.optimizers.test_hill_climbing_search module<a class="headerlink" href="#module-PyCTBN.tests.optimizers.test_hill_climbing_search" title="Permalink to this headline">¶</a></h2> |
|
||||||
<dl class="py class"> |
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||||||
<dt id="PyCTBN.tests.optimizers.test_hill_climbing_search.TestHillClimbingSearch"> |
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||||||
<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.tests.optimizers.test_hill_climbing_search.</code><code class="sig-name descname">TestHillClimbingSearch</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">methodName</span><span class="o">=</span><span class="default_value">'runTest'</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.optimizers.test_hill_climbing_search.TestHillClimbingSearch" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">unittest.case.TestCase</span></code></p> |
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.optimizers.test_hill_climbing_search.TestHillClimbingSearch.setUpClass"> |
|
||||||
<em class="property">classmethod </em><code class="sig-name descname">setUpClass</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.optimizers.test_hill_climbing_search.TestHillClimbingSearch.setUpClass" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Hook method for setting up class fixture before running tests in the class.</p> |
|
||||||
</dd></dl> |
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||||||
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<dl class="py method"> |
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||||||
<dt id="PyCTBN.tests.optimizers.test_hill_climbing_search.TestHillClimbingSearch.test_structure"> |
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||||||
<code class="sig-name descname">test_structure</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.optimizers.test_hill_climbing_search.TestHillClimbingSearch.test_structure" title="Permalink to this definition">¶</a></dt> |
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<dd></dd></dl> |
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<dl class="py method"> |
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<dt id="PyCTBN.tests.optimizers.test_hill_climbing_search.TestHillClimbingSearch.test_structure_3"> |
|
||||||
<code class="sig-name descname">test_structure_3</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.optimizers.test_hill_climbing_search.TestHillClimbingSearch.test_structure_3" title="Permalink to this definition">¶</a></dt> |
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<dd></dd></dl> |
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</dd></dl> |
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</section> |
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||||||
<section id="module-PyCTBN.tests.optimizers.test_tabu_search"> |
|
||||||
<span id="pyctbn-tests-optimizers-test-tabu-search-module"></span><h2>PyCTBN.tests.optimizers.test_tabu_search module<a class="headerlink" href="#module-PyCTBN.tests.optimizers.test_tabu_search" title="Permalink to this headline">¶</a></h2> |
|
||||||
<dl class="py class"> |
|
||||||
<dt id="PyCTBN.tests.optimizers.test_tabu_search.TestTabuSearch"> |
|
||||||
<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.tests.optimizers.test_tabu_search.</code><code class="sig-name descname">TestTabuSearch</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">methodName</span><span class="o">=</span><span class="default_value">'runTest'</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.optimizers.test_tabu_search.TestTabuSearch" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">unittest.case.TestCase</span></code></p> |
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.optimizers.test_tabu_search.TestTabuSearch.setUpClass"> |
|
||||||
<em class="property">classmethod </em><code class="sig-name descname">setUpClass</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.optimizers.test_tabu_search.TestTabuSearch.setUpClass" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Hook method for setting up class fixture before running tests in the class.</p> |
|
||||||
</dd></dl> |
|
||||||
|
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||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.optimizers.test_tabu_search.TestTabuSearch.test_structure"> |
|
||||||
<code class="sig-name descname">test_structure</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.optimizers.test_tabu_search.TestTabuSearch.test_structure" title="Permalink to this definition">¶</a></dt> |
|
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<dd></dd></dl> |
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||||||
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<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.optimizers.test_tabu_search.TestTabuSearch.test_structure_3"> |
|
||||||
<code class="sig-name descname">test_structure_3</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.optimizers.test_tabu_search.TestTabuSearch.test_structure_3" title="Permalink to this definition">¶</a></dt> |
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</section> |
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<section id="module-PyCTBN.tests.optimizers"> |
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||||||
<span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-PyCTBN.tests.optimizers" title="Permalink to this headline">¶</a></h2> |
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© Copyright 2021, Bregoli Alessandro, Martini Filippo, Moretti Luca. |
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<p><span class="caption-text">Contents:</span></p> |
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<ul> |
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||||||
<li class="toctree-l1"><a class="reference internal" href="PyCTBN.PyCTBN.html">PyCTBN.PyCTBN package</a><ul> |
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<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.html#subpackages">Subpackages</a></li> |
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<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.html#module-PyCTBN.PyCTBN">Module contents</a></li> |
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</ul> |
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</li> |
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<li class="toctree-l1"><a class="reference internal" href="examples.html">Examples</a><ul> |
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<li class="toctree-l2"><a class="reference internal" href="examples.html#installation-usage">Installation/Usage</a></li> |
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<li class="toctree-l2"><a class="reference internal" href="examples.html#implementing-your-own-data-importer">Implementing your own data importer</a></li> |
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<li class="toctree-l2"><a class="reference internal" href="examples.html#parameters-estimation-example">Parameters Estimation Example</a></li> |
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||||||
<li class="toctree-l2"><a class="reference internal" href="examples.html#structure-estimation-example">Structure Estimation Example</a></li> |
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</ul> |
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<div role="main" class=""> |
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<div id="content" class="hfeed entry-container hentry"> |
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<section id="pyctbn-tests-structure-graph-package"> |
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||||||
<h1>PyCTBN.tests.structure_graph package<a class="headerlink" href="#pyctbn-tests-structure-graph-package" title="Permalink to this headline">¶</a></h1> |
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||||||
<section id="submodules"> |
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||||||
<h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this headline">¶</a></h2> |
|
||||||
</section> |
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||||||
<section id="module-PyCTBN.tests.structure_graph.test_cim"> |
|
||||||
<span id="pyctbn-tests-structure-graph-test-cim-module"></span><h2>PyCTBN.tests.structure_graph.test_cim module<a class="headerlink" href="#module-PyCTBN.tests.structure_graph.test_cim" title="Permalink to this headline">¶</a></h2> |
|
||||||
<dl class="py class"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix"> |
|
||||||
<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.tests.structure_graph.test_cim.</code><code class="sig-name descname">TestConditionalIntensityMatrix</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">methodName</span><span class="o">=</span><span class="default_value">'runTest'</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">unittest.case.TestCase</span></code></p> |
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix.setUpClass"> |
|
||||||
<em class="property">classmethod </em><code class="sig-name descname">setUpClass</code><span class="sig-paren">(</span><span class="sig-paren">)</span> → None<a class="headerlink" href="#PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix.setUpClass" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Hook method for setting up class fixture before running tests in the class.</p> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix.test_compute_cim_coefficients"> |
|
||||||
<code class="sig-name descname">test_compute_cim_coefficients</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix.test_compute_cim_coefficients" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix.test_init"> |
|
||||||
<code class="sig-name descname">test_init</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix.test_init" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
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||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix.test_repr"> |
|
||||||
<code class="sig-name descname">test_repr</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix.test_repr" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
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||||||
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||||||
</dd></dl> |
|
||||||
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||||||
</section> |
|
||||||
<section id="module-PyCTBN.tests.structure_graph.test_networkgenerator"> |
|
||||||
<span id="pyctbn-tests-structure-graph-test-networkgenerator-module"></span><h2>PyCTBN.tests.structure_graph.test_networkgenerator module<a class="headerlink" href="#module-PyCTBN.tests.structure_graph.test_networkgenerator" title="Permalink to this headline">¶</a></h2> |
|
||||||
<dl class="py class"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_networkgenerator.TestNetworkGenerator"> |
|
||||||
<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.tests.structure_graph.test_networkgenerator.</code><code class="sig-name descname">TestNetworkGenerator</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">methodName</span><span class="o">=</span><span class="default_value">'runTest'</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgenerator.TestNetworkGenerator" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">unittest.case.TestCase</span></code></p> |
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_networkgenerator.TestNetworkGenerator.test_generate_cims"> |
|
||||||
<code class="sig-name descname">test_generate_cims</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgenerator.TestNetworkGenerator.test_generate_cims" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_networkgenerator.TestNetworkGenerator.test_generate_graph"> |
|
||||||
<code class="sig-name descname">test_generate_graph</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgenerator.TestNetworkGenerator.test_generate_graph" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
</section> |
|
||||||
<section id="module-PyCTBN.tests.structure_graph.test_networkgraph"> |
|
||||||
<span id="pyctbn-tests-structure-graph-test-networkgraph-module"></span><h2>PyCTBN.tests.structure_graph.test_networkgraph module<a class="headerlink" href="#module-PyCTBN.tests.structure_graph.test_networkgraph" title="Permalink to this headline">¶</a></h2> |
|
||||||
<dl class="py class"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph"> |
|
||||||
<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.tests.structure_graph.test_networkgraph.</code><code class="sig-name descname">TestNetworkGraph</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">methodName</span><span class="o">=</span><span class="default_value">'runTest'</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">unittest.case.TestCase</span></code></p> |
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.aux_build_p_combs_structure"> |
|
||||||
<code class="sig-name descname">aux_build_p_combs_structure</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">graph</span></em>, <em class="sig-param"><span class="n">p_vals</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.aux_build_p_combs_structure" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.aux_build_time_columns_filtering_structure_for_a_node"> |
|
||||||
<code class="sig-name descname">aux_build_time_columns_filtering_structure_for_a_node</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">graph</span></em>, <em class="sig-param"><span class="n">node_id</span></em>, <em class="sig-param"><span class="n">p_indxs</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.aux_build_time_columns_filtering_structure_for_a_node" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.aux_build_time_scalar_indexing_structure_for_a_node"> |
|
||||||
<code class="sig-name descname">aux_build_time_scalar_indexing_structure_for_a_node</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">graph</span></em>, <em class="sig-param"><span class="n">node_id</span></em>, <em class="sig-param"><span class="n">parents_indxs</span></em>, <em class="sig-param"><span class="n">parents_labels</span></em>, <em class="sig-param"><span class="n">parents_vals</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.aux_build_time_scalar_indexing_structure_for_a_node" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.aux_build_transition_columns_filtering_structure"> |
|
||||||
<code class="sig-name descname">aux_build_transition_columns_filtering_structure</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">graph</span></em>, <em class="sig-param"><span class="n">node_id</span></em>, <em class="sig-param"><span class="n">p_indxs</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.aux_build_transition_columns_filtering_structure" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.aux_build_transition_scalar_indexing_structure_for_a_node"> |
|
||||||
<code class="sig-name descname">aux_build_transition_scalar_indexing_structure_for_a_node</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">graph</span></em>, <em class="sig-param"><span class="n">node_id</span></em>, <em class="sig-param"><span class="n">parents_indxs</span></em>, <em class="sig-param"><span class="n">parents_labels</span></em>, <em class="sig-param"><span class="n">parents_values</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.aux_build_transition_scalar_indexing_structure_for_a_node" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.setUpClass"> |
|
||||||
<em class="property">classmethod </em><code class="sig-name descname">setUpClass</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.setUpClass" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Hook method for setting up class fixture before running tests in the class.</p> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_add_edges"> |
|
||||||
<code class="sig-name descname">test_add_edges</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_add_edges" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_add_nodes"> |
|
||||||
<code class="sig-name descname">test_add_nodes</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_add_nodes" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_build_p_combs_structure"> |
|
||||||
<code class="sig-name descname">test_build_p_combs_structure</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_build_p_combs_structure" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_build_time_columns_filtering_structure_for_a_node"> |
|
||||||
<code class="sig-name descname">test_build_time_columns_filtering_structure_for_a_node</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_build_time_columns_filtering_structure_for_a_node" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_build_time_scalar_indexing_structure_for_a_node"> |
|
||||||
<code class="sig-name descname">test_build_time_scalar_indexing_structure_for_a_node</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_build_time_scalar_indexing_structure_for_a_node" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_build_transition_columns_filtering_structure"> |
|
||||||
<code class="sig-name descname">test_build_transition_columns_filtering_structure</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_build_transition_columns_filtering_structure" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_build_transition_scalar_indexing_structure_for_a_node"> |
|
||||||
<code class="sig-name descname">test_build_transition_scalar_indexing_structure_for_a_node</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_build_transition_scalar_indexing_structure_for_a_node" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_fast_init"> |
|
||||||
<code class="sig-name descname">test_fast_init</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_fast_init" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_get_node_indx"> |
|
||||||
<code class="sig-name descname">test_get_node_indx</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_get_node_indx" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_get_ordered_by_indx_set_of_parents"> |
|
||||||
<code class="sig-name descname">test_get_ordered_by_indx_set_of_parents</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_get_ordered_by_indx_set_of_parents" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_get_parents_by_id"> |
|
||||||
<code class="sig-name descname">test_get_parents_by_id</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_get_parents_by_id" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_get_states_number"> |
|
||||||
<code class="sig-name descname">test_get_states_number</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_get_states_number" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_init"> |
|
||||||
<code class="sig-name descname">test_init</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_init" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
</section> |
|
||||||
<section id="module-PyCTBN.tests.structure_graph.test_sample_path"> |
|
||||||
<span id="pyctbn-tests-structure-graph-test-sample-path-module"></span><h2>PyCTBN.tests.structure_graph.test_sample_path module<a class="headerlink" href="#module-PyCTBN.tests.structure_graph.test_sample_path" title="Permalink to this headline">¶</a></h2> |
|
||||||
<dl class="py class"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath"> |
|
||||||
<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.tests.structure_graph.test_sample_path.</code><code class="sig-name descname">TestSamplePath</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">methodName</span><span class="o">=</span><span class="default_value">'runTest'</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">unittest.case.TestCase</span></code></p> |
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.setUpClass"> |
|
||||||
<em class="property">classmethod </em><code class="sig-name descname">setUpClass</code><span class="sig-paren">(</span><span class="sig-paren">)</span> → None<a class="headerlink" href="#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.setUpClass" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Hook method for setting up class fixture before running tests in the class.</p> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_buid_samplepath_no_concatenated_samples"> |
|
||||||
<code class="sig-name descname">test_buid_samplepath_no_concatenated_samples</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_buid_samplepath_no_concatenated_samples" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_buid_samplepath_no_variables"> |
|
||||||
<code class="sig-name descname">test_buid_samplepath_no_variables</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_buid_samplepath_no_variables" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_build_saplepath_no_prior_net_structure"> |
|
||||||
<code class="sig-name descname">test_build_saplepath_no_prior_net_structure</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_build_saplepath_no_prior_net_structure" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_build_structure"> |
|
||||||
<code class="sig-name descname">test_build_structure</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_build_structure" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_build_structure_bad_sorter"> |
|
||||||
<code class="sig-name descname">test_build_structure_bad_sorter</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_build_structure_bad_sorter" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_build_trajectories"> |
|
||||||
<code class="sig-name descname">test_build_trajectories</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_build_trajectories" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_init"> |
|
||||||
<code class="sig-name descname">test_init</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_init" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_init_not_filled_dataframse"> |
|
||||||
<code class="sig-name descname">test_init_not_filled_dataframse</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_init_not_filled_dataframse" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_init_not_initialized_importer"> |
|
||||||
<code class="sig-name descname">test_init_not_initialized_importer</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_init_not_initialized_importer" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
</section> |
|
||||||
<section id="module-PyCTBN.tests.structure_graph.test_setofcims"> |
|
||||||
<span id="pyctbn-tests-structure-graph-test-setofcims-module"></span><h2>PyCTBN.tests.structure_graph.test_setofcims module<a class="headerlink" href="#module-PyCTBN.tests.structure_graph.test_setofcims" title="Permalink to this headline">¶</a></h2> |
|
||||||
<dl class="py class"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims"> |
|
||||||
<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.tests.structure_graph.test_setofcims.</code><code class="sig-name descname">TestSetOfCims</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">methodName</span><span class="o">=</span><span class="default_value">'runTest'</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">unittest.case.TestCase</span></code></p> |
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.another_filtering_method"> |
|
||||||
<code class="sig-name descname">another_filtering_method</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">p_combs</span></em>, <em class="sig-param"><span class="n">mask</span></em>, <em class="sig-param"><span class="n">parent_value</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.another_filtering_method" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.aux_test_build_cims"> |
|
||||||
<code class="sig-name descname">aux_test_build_cims</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">node_id</span></em>, <em class="sig-param"><span class="n">p_values</span></em>, <em class="sig-param"><span class="n">node_states</span></em>, <em class="sig-param"><span class="n">p_combs</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.aux_test_build_cims" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.aux_test_init"> |
|
||||||
<code class="sig-name descname">aux_test_init</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">node_id</span></em>, <em class="sig-param"><span class="n">parents_states_number</span></em>, <em class="sig-param"><span class="n">node_states_number</span></em>, <em class="sig-param"><span class="n">p_combs</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.aux_test_init" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.build_p_comb_structure_for_a_node"> |
|
||||||
<code class="sig-name descname">build_p_comb_structure_for_a_node</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">parents_values</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.build_p_comb_structure_for_a_node" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Builds the combinatory structure that contains the combinations of all the values contained in parents_values.</p> |
|
||||||
<dl class="simple"> |
|
||||||
<dt>Parameters:</dt><dd><p>parents_values: the cardinalities of the nodes</p> |
|
||||||
</dd> |
|
||||||
<dt>Returns:</dt><dd><p>a numpy matrix containing a grid of the combinations</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.setUpClass"> |
|
||||||
<em class="property">classmethod </em><code class="sig-name descname">setUpClass</code><span class="sig-paren">(</span><span class="sig-paren">)</span> → None<a class="headerlink" href="#PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.setUpClass" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Hook method for setting up class fixture before running tests in the class.</p> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.test_build_cims"> |
|
||||||
<code class="sig-name descname">test_build_cims</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.test_build_cims" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.test_filter_cims_with_mask"> |
|
||||||
<code class="sig-name descname">test_filter_cims_with_mask</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.test_filter_cims_with_mask" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.test_init"> |
|
||||||
<code class="sig-name descname">test_init</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.test_init" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
</section> |
|
||||||
<section id="module-PyCTBN.tests.structure_graph.test_structure"> |
|
||||||
<span id="pyctbn-tests-structure-graph-test-structure-module"></span><h2>PyCTBN.tests.structure_graph.test_structure module<a class="headerlink" href="#module-PyCTBN.tests.structure_graph.test_structure" title="Permalink to this headline">¶</a></h2> |
|
||||||
<dl class="py class"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_structure.TestStructure"> |
|
||||||
<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.tests.structure_graph.test_structure.</code><code class="sig-name descname">TestStructure</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">methodName</span><span class="o">=</span><span class="default_value">'runTest'</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_structure.TestStructure" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">unittest.case.TestCase</span></code></p> |
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_structure.TestStructure.setUpClass"> |
|
||||||
<em class="property">classmethod </em><code class="sig-name descname">setUpClass</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_structure.TestStructure.setUpClass" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Hook method for setting up class fixture before running tests in the class.</p> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_structure.TestStructure.test_edges_operations"> |
|
||||||
<code class="sig-name descname">test_edges_operations</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_structure.TestStructure.test_edges_operations" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_structure.TestStructure.test_equality"> |
|
||||||
<code class="sig-name descname">test_equality</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_structure.TestStructure.test_equality" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_structure.TestStructure.test_get_node_id"> |
|
||||||
<code class="sig-name descname">test_get_node_id</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_structure.TestStructure.test_get_node_id" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_structure.TestStructure.test_get_node_indx"> |
|
||||||
<code class="sig-name descname">test_get_node_indx</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_structure.TestStructure.test_get_node_indx" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_structure.TestStructure.test_get_positional_node_indx"> |
|
||||||
<code class="sig-name descname">test_get_positional_node_indx</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_structure.TestStructure.test_get_positional_node_indx" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_structure.TestStructure.test_get_states_number"> |
|
||||||
<code class="sig-name descname">test_get_states_number</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_structure.TestStructure.test_get_states_number" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_structure.TestStructure.test_init"> |
|
||||||
<code class="sig-name descname">test_init</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_structure.TestStructure.test_init" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_structure.TestStructure.test_repr"> |
|
||||||
<code class="sig-name descname">test_repr</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_structure.TestStructure.test_repr" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
</section> |
|
||||||
<section id="module-PyCTBN.tests.structure_graph.test_trajectory"> |
|
||||||
<span id="pyctbn-tests-structure-graph-test-trajectory-module"></span><h2>PyCTBN.tests.structure_graph.test_trajectory module<a class="headerlink" href="#module-PyCTBN.tests.structure_graph.test_trajectory" title="Permalink to this headline">¶</a></h2> |
|
||||||
<dl class="py class"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_trajectory.TestTrajectory"> |
|
||||||
<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.tests.structure_graph.test_trajectory.</code><code class="sig-name descname">TestTrajectory</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">methodName</span><span class="o">=</span><span class="default_value">'runTest'</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_trajectory.TestTrajectory" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">unittest.case.TestCase</span></code></p> |
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_trajectory.TestTrajectory.setUpClass"> |
|
||||||
<em class="property">classmethod </em><code class="sig-name descname">setUpClass</code><span class="sig-paren">(</span><span class="sig-paren">)</span> → None<a class="headerlink" href="#PyCTBN.tests.structure_graph.test_trajectory.TestTrajectory.setUpClass" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Hook method for setting up class fixture before running tests in the class.</p> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_trajectory.TestTrajectory.test_init"> |
|
||||||
<code class="sig-name descname">test_init</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_trajectory.TestTrajectory.test_init" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
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</dd></dl> |
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</section> |
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||||||
<section id="module-PyCTBN.tests.structure_graph.test_trajectorygenerator"> |
|
||||||
<span id="pyctbn-tests-structure-graph-test-trajectorygenerator-module"></span><h2>PyCTBN.tests.structure_graph.test_trajectorygenerator module<a class="headerlink" href="#module-PyCTBN.tests.structure_graph.test_trajectorygenerator" title="Permalink to this headline">¶</a></h2> |
|
||||||
<dl class="py class"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_trajectorygenerator.TestTrajectoryGenerator"> |
|
||||||
<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.tests.structure_graph.test_trajectorygenerator.</code><code class="sig-name descname">TestTrajectoryGenerator</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">methodName</span><span class="o">=</span><span class="default_value">'runTest'</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_trajectorygenerator.TestTrajectoryGenerator" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">unittest.case.TestCase</span></code></p> |
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.structure_graph.test_trajectorygenerator.TestTrajectoryGenerator.setUpClass"> |
|
||||||
<em class="property">classmethod </em><code class="sig-name descname">setUpClass</code><span class="sig-paren">(</span><span class="sig-paren">)</span> → None<a class="headerlink" href="#PyCTBN.tests.structure_graph.test_trajectorygenerator.TestTrajectoryGenerator.setUpClass" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Hook method for setting up class fixture before running tests in the class.</p> |
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</dd></dl> |
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<dl class="py method"> |
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<dt id="PyCTBN.tests.structure_graph.test_trajectorygenerator.TestTrajectoryGenerator.test_generated_trajectory"> |
|
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<code class="sig-name descname">test_generated_trajectory</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_trajectorygenerator.TestTrajectoryGenerator.test_generated_trajectory" title="Permalink to this definition">¶</a></dt> |
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<dd></dd></dl> |
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<dl class="py method"> |
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<dt id="PyCTBN.tests.structure_graph.test_trajectorygenerator.TestTrajectoryGenerator.test_generated_trajectory_max_tr"> |
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<code class="sig-name descname">test_generated_trajectory_max_tr</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_trajectorygenerator.TestTrajectoryGenerator.test_generated_trajectory_max_tr" title="Permalink to this definition">¶</a></dt> |
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<dd></dd></dl> |
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<dl class="py method"> |
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<dt id="PyCTBN.tests.structure_graph.test_trajectorygenerator.TestTrajectoryGenerator.test_init"> |
|
||||||
<code class="sig-name descname">test_init</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_trajectorygenerator.TestTrajectoryGenerator.test_init" title="Permalink to this definition">¶</a></dt> |
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<dd></dd></dl> |
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<dl class="py method"> |
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<dt id="PyCTBN.tests.structure_graph.test_trajectorygenerator.TestTrajectoryGenerator.test_multi_trajectory"> |
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<code class="sig-name descname">test_multi_trajectory</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_trajectorygenerator.TestTrajectoryGenerator.test_multi_trajectory" title="Permalink to this definition">¶</a></dt> |
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<dd></dd></dl> |
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</dd></dl> |
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</section> |
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<section id="module-PyCTBN.tests.structure_graph"> |
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<span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-PyCTBN.tests.structure_graph" title="Permalink to this headline">¶</a></h2> |
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<li class="toctree-l2"><a class="reference internal" href="examples.html#implementing-your-own-data-importer">Implementing your own data importer</a></li> |
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<li class="toctree-l2"><a class="reference internal" href="examples.html#parameters-estimation-example">Parameters Estimation Example</a></li> |
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<li class="toctree-l2"><a class="reference internal" href="examples.html#structure-estimation-example">Structure Estimation Example</a></li> |
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<div id="content" class="hfeed entry-container hentry"> |
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<section id="pyctbn-tests-utility-package"> |
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<h1>PyCTBN.tests.utility package<a class="headerlink" href="#pyctbn-tests-utility-package" title="Permalink to this headline">¶</a></h1> |
|
||||||
<section id="submodules"> |
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||||||
<h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this headline">¶</a></h2> |
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||||||
</section> |
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||||||
<section id="module-PyCTBN.tests.utility.test_cache"> |
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||||||
<span id="pyctbn-tests-utility-test-cache-module"></span><h2>PyCTBN.tests.utility.test_cache module<a class="headerlink" href="#module-PyCTBN.tests.utility.test_cache" title="Permalink to this headline">¶</a></h2> |
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||||||
<dl class="py class"> |
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||||||
<dt id="PyCTBN.tests.utility.test_cache.TestCache"> |
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||||||
<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.tests.utility.test_cache.</code><code class="sig-name descname">TestCache</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">methodName</span><span class="o">=</span><span class="default_value">'runTest'</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_cache.TestCache" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">unittest.case.TestCase</span></code></p> |
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.utility.test_cache.TestCache.test_clear"> |
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||||||
<code class="sig-name descname">test_clear</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_cache.TestCache.test_clear" title="Permalink to this definition">¶</a></dt> |
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<dd></dd></dl> |
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<dl class="py method"> |
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||||||
<dt id="PyCTBN.tests.utility.test_cache.TestCache.test_find"> |
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||||||
<code class="sig-name descname">test_find</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_cache.TestCache.test_find" title="Permalink to this definition">¶</a></dt> |
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<dd></dd></dl> |
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<dl class="py method"> |
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||||||
<dt id="PyCTBN.tests.utility.test_cache.TestCache.test_init"> |
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||||||
<code class="sig-name descname">test_init</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_cache.TestCache.test_init" title="Permalink to this definition">¶</a></dt> |
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<dd></dd></dl> |
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<dl class="py method"> |
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||||||
<dt id="PyCTBN.tests.utility.test_cache.TestCache.test_put"> |
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||||||
<code class="sig-name descname">test_put</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_cache.TestCache.test_put" title="Permalink to this definition">¶</a></dt> |
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<dd></dd></dl> |
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</dd></dl> |
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</section> |
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||||||
<section id="module-PyCTBN.tests.utility.test_json_importer"> |
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||||||
<span id="pyctbn-tests-utility-test-json-importer-module"></span><h2>PyCTBN.tests.utility.test_json_importer module<a class="headerlink" href="#module-PyCTBN.tests.utility.test_json_importer" title="Permalink to this headline">¶</a></h2> |
|
||||||
<dl class="py class"> |
|
||||||
<dt id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter"> |
|
||||||
<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.tests.utility.test_json_importer.</code><code class="sig-name descname">TestJsonImporter</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">methodName</span><span class="o">=</span><span class="default_value">'runTest'</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">unittest.case.TestCase</span></code></p> |
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.ordered"> |
|
||||||
<code class="sig-name descname">ordered</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">obj</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.ordered" title="Permalink to this definition">¶</a></dt> |
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||||||
<dd></dd></dl> |
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||||||
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||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.setUpClass"> |
|
||||||
<em class="property">classmethod </em><code class="sig-name descname">setUpClass</code><span class="sig-paren">(</span><span class="sig-paren">)</span> → None<a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.setUpClass" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Hook method for setting up class fixture before running tests in the class.</p> |
|
||||||
</dd></dl> |
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||||||
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||||||
<dl class="py method"> |
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||||||
<dt id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_build_sorter"> |
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||||||
<code class="sig-name descname">test_build_sorter</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_build_sorter" title="Permalink to this definition">¶</a></dt> |
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<dd></dd></dl> |
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<dl class="py method"> |
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<dt id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_clear_concatenated_frame"> |
|
||||||
<code class="sig-name descname">test_clear_concatenated_frame</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_clear_concatenated_frame" title="Permalink to this definition">¶</a></dt> |
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<dl class="py method"> |
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||||||
<dt id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_clear_data_frame_list"> |
|
||||||
<code class="sig-name descname">test_clear_data_frame_list</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_clear_data_frame_list" title="Permalink to this definition">¶</a></dt> |
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||||||
<dt id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_compute_row_delta_in_all_frames"> |
|
||||||
<code class="sig-name descname">test_compute_row_delta_in_all_frames</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_compute_row_delta_in_all_frames" title="Permalink to this definition">¶</a></dt> |
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||||||
<dd></dd></dl> |
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||||||
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|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_compute_row_delta_in_all_frames_not_init_sorter"> |
|
||||||
<code class="sig-name descname">test_compute_row_delta_in_all_frames_not_init_sorter</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_compute_row_delta_in_all_frames_not_init_sorter" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_compute_row_delta_single_samples_frame"> |
|
||||||
<code class="sig-name descname">test_compute_row_delta_single_samples_frame</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_compute_row_delta_single_samples_frame" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_dataset_id"> |
|
||||||
<code class="sig-name descname">test_dataset_id</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_dataset_id" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_file_path"> |
|
||||||
<code class="sig-name descname">test_file_path</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_file_path" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_import_data"> |
|
||||||
<code class="sig-name descname">test_import_data</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_import_data" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_import_sampled_cims"> |
|
||||||
<code class="sig-name descname">test_import_sampled_cims</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_import_sampled_cims" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_import_structure"> |
|
||||||
<code class="sig-name descname">test_import_structure</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_import_structure" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
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|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_import_variables"> |
|
||||||
<code class="sig-name descname">test_import_variables</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_import_variables" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_init"> |
|
||||||
<code class="sig-name descname">test_init</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_init" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
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|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_normalize_trajectories"> |
|
||||||
<code class="sig-name descname">test_normalize_trajectories</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_normalize_trajectories" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_normalize_trajectories_wrong_indx"> |
|
||||||
<code class="sig-name descname">test_normalize_trajectories_wrong_indx</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_normalize_trajectories_wrong_indx" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
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|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_normalize_trajectories_wrong_key"> |
|
||||||
<code class="sig-name descname">test_normalize_trajectories_wrong_key</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_normalize_trajectories_wrong_key" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_read_json_file_found"> |
|
||||||
<code class="sig-name descname">test_read_json_file_found</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_read_json_file_found" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
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|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_read_json_file_not_found"> |
|
||||||
<code class="sig-name descname">test_read_json_file_not_found</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_read_json_file_not_found" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
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|
||||||
</dd></dl> |
|
||||||
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|
||||||
</section> |
|
||||||
<section id="module-PyCTBN.tests.utility.test_sample_importer"> |
|
||||||
<span id="pyctbn-tests-utility-test-sample-importer-module"></span><h2>PyCTBN.tests.utility.test_sample_importer module<a class="headerlink" href="#module-PyCTBN.tests.utility.test_sample_importer" title="Permalink to this headline">¶</a></h2> |
|
||||||
<dl class="py class"> |
|
||||||
<dt id="PyCTBN.tests.utility.test_sample_importer.TestSampleImporter"> |
|
||||||
<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.tests.utility.test_sample_importer.</code><code class="sig-name descname">TestSampleImporter</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">methodName</span><span class="o">=</span><span class="default_value">'runTest'</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_sample_importer.TestSampleImporter" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">unittest.case.TestCase</span></code></p> |
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.utility.test_sample_importer.TestSampleImporter.ordered"> |
|
||||||
<code class="sig-name descname">ordered</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">obj</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_sample_importer.TestSampleImporter.ordered" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
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|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.utility.test_sample_importer.TestSampleImporter.setUpClass"> |
|
||||||
<em class="property">classmethod </em><code class="sig-name descname">setUpClass</code><span class="sig-paren">(</span><span class="sig-paren">)</span> → None<a class="headerlink" href="#PyCTBN.tests.utility.test_sample_importer.TestSampleImporter.setUpClass" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Hook method for setting up class fixture before running tests in the class.</p> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.utility.test_sample_importer.TestSampleImporter.test_init"> |
|
||||||
<code class="sig-name descname">test_init</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_sample_importer.TestSampleImporter.test_init" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.tests.utility.test_sample_importer.TestSampleImporter.test_order"> |
|
||||||
<code class="sig-name descname">test_order</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_sample_importer.TestSampleImporter.test_order" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
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|
||||||
</dd></dl> |
|
||||||
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|
||||||
</section> |
|
||||||
<section id="module-PyCTBN.tests.utility"> |
|
||||||
<span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-PyCTBN.tests.utility" title="Permalink to this headline">¶</a></h2> |
|
||||||
</section> |
|
||||||
</section> |
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<footer> |
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<hr/> |
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<div role="contentinfo"> |
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||||||
<p> |
|
||||||
© Copyright 2021, Bregoli Alessandro, Martini Filippo, Moretti Luca. |
|
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</p> |
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||||||
</div> |
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Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a <a href="https://github.com/jucacrispim/sphinx_pdj_theme">theme</a> provided by <a href="http://poraodojuca.net">Porão do Juca</a>. |
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@ -1,53 +0,0 @@ |
|||||||
PyCTBN.PyCTBN.estimators package |
|
||||||
================================ |
|
||||||
|
|
||||||
Submodules |
|
||||||
---------- |
|
||||||
|
|
||||||
PyCTBN.PyCTBN.estimators.fam\_score\_calculator module |
|
||||||
------------------------------------------------------ |
|
||||||
|
|
||||||
.. automodule:: PyCTBN.PyCTBN.estimators.fam_score_calculator |
|
||||||
:members: |
|
||||||
:undoc-members: |
|
||||||
:show-inheritance: |
|
||||||
|
|
||||||
PyCTBN.PyCTBN.estimators.parameters\_estimator module |
|
||||||
----------------------------------------------------- |
|
||||||
|
|
||||||
.. automodule:: PyCTBN.PyCTBN.estimators.parameters_estimator |
|
||||||
:members: |
|
||||||
:undoc-members: |
|
||||||
:show-inheritance: |
|
||||||
|
|
||||||
PyCTBN.PyCTBN.estimators.structure\_constraint\_based\_estimator module |
|
||||||
----------------------------------------------------------------------- |
|
||||||
|
|
||||||
.. automodule:: PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator |
|
||||||
:members: |
|
||||||
:undoc-members: |
|
||||||
:show-inheritance: |
|
||||||
|
|
||||||
PyCTBN.PyCTBN.estimators.structure\_estimator module |
|
||||||
---------------------------------------------------- |
|
||||||
|
|
||||||
.. automodule:: PyCTBN.PyCTBN.estimators.structure_estimator |
|
||||||
:members: |
|
||||||
:undoc-members: |
|
||||||
:show-inheritance: |
|
||||||
|
|
||||||
PyCTBN.PyCTBN.estimators.structure\_score\_based\_estimator module |
|
||||||
------------------------------------------------------------------ |
|
||||||
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|
||||||
.. automodule:: PyCTBN.PyCTBN.estimators.structure_score_based_estimator |
|
||||||
:members: |
|
||||||
:undoc-members: |
|
||||||
:show-inheritance: |
|
||||||
|
|
||||||
Module contents |
|
||||||
--------------- |
|
||||||
|
|
||||||
.. automodule:: PyCTBN.PyCTBN.estimators |
|
||||||
:members: |
|
||||||
:undoc-members: |
|
||||||
:show-inheritance: |
|
||||||
@ -1,45 +0,0 @@ |
|||||||
PyCTBN.PyCTBN.optimizers package |
|
||||||
================================ |
|
||||||
|
|
||||||
Submodules |
|
||||||
---------- |
|
||||||
|
|
||||||
PyCTBN.PyCTBN.optimizers.constraint\_based\_optimizer module |
|
||||||
------------------------------------------------------------ |
|
||||||
|
|
||||||
.. automodule:: PyCTBN.PyCTBN.optimizers.constraint_based_optimizer |
|
||||||
:members: |
|
||||||
:undoc-members: |
|
||||||
:show-inheritance: |
|
||||||
|
|
||||||
PyCTBN.PyCTBN.optimizers.hill\_climbing\_search module |
|
||||||
------------------------------------------------------ |
|
||||||
|
|
||||||
.. automodule:: PyCTBN.PyCTBN.optimizers.hill_climbing_search |
|
||||||
:members: |
|
||||||
:undoc-members: |
|
||||||
:show-inheritance: |
|
||||||
|
|
||||||
PyCTBN.PyCTBN.optimizers.optimizer module |
|
||||||
----------------------------------------- |
|
||||||
|
|
||||||
.. automodule:: PyCTBN.PyCTBN.optimizers.optimizer |
|
||||||
:members: |
|
||||||
:undoc-members: |
|
||||||
:show-inheritance: |
|
||||||
|
|
||||||
PyCTBN.PyCTBN.optimizers.tabu\_search module |
|
||||||
-------------------------------------------- |
|
||||||
|
|
||||||
.. automodule:: PyCTBN.PyCTBN.optimizers.tabu_search |
|
||||||
:members: |
|
||||||
:undoc-members: |
|
||||||
:show-inheritance: |
|
||||||
|
|
||||||
Module contents |
|
||||||
--------------- |
|
||||||
|
|
||||||
.. automodule:: PyCTBN.PyCTBN.optimizers |
|
||||||
:members: |
|
||||||
:undoc-members: |
|
||||||
:show-inheritance: |
|
||||||
@ -1,77 +0,0 @@ |
|||||||
PyCTBN.PyCTBN.structure\_graph package |
|
||||||
====================================== |
|
||||||
|
|
||||||
Submodules |
|
||||||
---------- |
|
||||||
|
|
||||||
PyCTBN.PyCTBN.structure\_graph.conditional\_intensity\_matrix module |
|
||||||
-------------------------------------------------------------------- |
|
||||||
|
|
||||||
.. automodule:: PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix |
|
||||||
:members: |
|
||||||
:undoc-members: |
|
||||||
:show-inheritance: |
|
||||||
|
|
||||||
PyCTBN.PyCTBN.structure\_graph.network\_generator module |
|
||||||
-------------------------------------------------------- |
|
||||||
|
|
||||||
.. automodule:: PyCTBN.PyCTBN.structure_graph.network_generator |
|
||||||
:members: |
|
||||||
:undoc-members: |
|
||||||
:show-inheritance: |
|
||||||
|
|
||||||
PyCTBN.PyCTBN.structure\_graph.network\_graph module |
|
||||||
---------------------------------------------------- |
|
||||||
|
|
||||||
.. automodule:: PyCTBN.PyCTBN.structure_graph.network_graph |
|
||||||
:members: |
|
||||||
:undoc-members: |
|
||||||
:show-inheritance: |
|
||||||
|
|
||||||
PyCTBN.PyCTBN.structure\_graph.sample\_path module |
|
||||||
-------------------------------------------------- |
|
||||||
|
|
||||||
.. automodule:: PyCTBN.PyCTBN.structure_graph.sample_path |
|
||||||
:members: |
|
||||||
:undoc-members: |
|
||||||
:show-inheritance: |
|
||||||
|
|
||||||
PyCTBN.PyCTBN.structure\_graph.set\_of\_cims module |
|
||||||
--------------------------------------------------- |
|
||||||
|
|
||||||
.. automodule:: PyCTBN.PyCTBN.structure_graph.set_of_cims |
|
||||||
:members: |
|
||||||
:undoc-members: |
|
||||||
:show-inheritance: |
|
||||||
|
|
||||||
PyCTBN.PyCTBN.structure\_graph.structure module |
|
||||||
----------------------------------------------- |
|
||||||
|
|
||||||
.. automodule:: PyCTBN.PyCTBN.structure_graph.structure |
|
||||||
:members: |
|
||||||
:undoc-members: |
|
||||||
:show-inheritance: |
|
||||||
|
|
||||||
PyCTBN.PyCTBN.structure\_graph.trajectory module |
|
||||||
------------------------------------------------ |
|
||||||
|
|
||||||
.. automodule:: PyCTBN.PyCTBN.structure_graph.trajectory |
|
||||||
:members: |
|
||||||
:undoc-members: |
|
||||||
:show-inheritance: |
|
||||||
|
|
||||||
PyCTBN.PyCTBN.structure\_graph.trajectory\_generator module |
|
||||||
----------------------------------------------------------- |
|
||||||
|
|
||||||
.. automodule:: PyCTBN.PyCTBN.structure_graph.trajectory_generator |
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||||||
:members: |
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||||||
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||||||
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||||||
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||||||
Module contents |
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||||||
--------------- |
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||||||
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||||||
.. automodule:: PyCTBN.PyCTBN.structure_graph |
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:members: |
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||||||
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|||||||
PyCTBN.PyCTBN.utility package |
|
||||||
============================= |
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||||||
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||||||
Submodules |
|
||||||
---------- |
|
||||||
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||||||
PyCTBN.PyCTBN.utility.abstract\_exporter module |
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||||||
----------------------------------------------- |
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||||||
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||||||
.. automodule:: PyCTBN.PyCTBN.utility.abstract_exporter |
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PyCTBN.PyCTBN.utility.abstract\_importer module |
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||||||
----------------------------------------------- |
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||||||
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||||||
.. automodule:: PyCTBN.PyCTBN.utility.abstract_importer |
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||||||
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:show-inheritance: |
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||||||
PyCTBN.PyCTBN.utility.cache module |
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||||||
---------------------------------- |
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||||||
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||||||
.. automodule:: PyCTBN.PyCTBN.utility.cache |
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:members: |
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||||||
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||||||
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||||||
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||||||
PyCTBN.PyCTBN.utility.json\_exporter module |
|
||||||
------------------------------------------- |
|
||||||
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||||||
.. automodule:: PyCTBN.PyCTBN.utility.json_exporter |
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||||||
:members: |
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||||||
PyCTBN.PyCTBN.utility.json\_importer module |
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||||||
------------------------------------------- |
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||||||
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||||||
.. automodule:: PyCTBN.PyCTBN.utility.json_importer |
|
||||||
:members: |
|
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:undoc-members: |
|
||||||
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|
||||||
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||||||
PyCTBN.PyCTBN.utility.sample\_importer module |
|
||||||
--------------------------------------------- |
|
||||||
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||||||
.. automodule:: PyCTBN.PyCTBN.utility.sample_importer |
|
||||||
:members: |
|
||||||
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||||||
:show-inheritance: |
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||||||
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Module contents |
|
||||||
--------------- |
|
||||||
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||||||
.. automodule:: PyCTBN.PyCTBN.utility |
|
||||||
:members: |
|
||||||
:undoc-members: |
|
||||||
:show-inheritance: |
|
||||||
@ -1,38 +0,0 @@ |
|||||||
PyCTBN package |
|
||||||
============== |
|
||||||
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|
||||||
Subpackages |
|
||||||
----------- |
|
||||||
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|
||||||
.. toctree:: |
|
||||||
:maxdepth: 4 |
|
||||||
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||||||
PyCTBN.PyCTBN |
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||||||
PyCTBN.tests |
|
||||||
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|
||||||
Submodules |
|
||||||
---------- |
|
||||||
|
|
||||||
PyCTBN.basic\_main module |
|
||||||
------------------------- |
|
||||||
|
|
||||||
.. automodule:: PyCTBN.basic_main |
|
||||||
:members: |
|
||||||
:undoc-members: |
|
||||||
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|
||||||
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|
||||||
PyCTBN.setup module |
|
||||||
------------------- |
|
||||||
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|
||||||
.. automodule:: PyCTBN.setup |
|
||||||
:members: |
|
||||||
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||||||
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|
||||||
|
|
||||||
Module contents |
|
||||||
--------------- |
|
||||||
|
|
||||||
.. automodule:: PyCTBN |
|
||||||
:members: |
|
||||||
:undoc-members: |
|
||||||
:show-inheritance: |
|
||||||
@ -1,23 +0,0 @@ |
|||||||
.. PyCTBN documentation master file, created by |
|
||||||
sphinx-quickstart on Wed Mar 3 14:50:44 2021. |
|
||||||
You can adapt this file completely to your liking, but it should at least |
|
||||||
contain the root `toctree` directive. |
|
||||||
|
|
||||||
Welcome to PyCTBN's documentation! |
|
||||||
================================== |
|
||||||
|
|
||||||
.. toctree:: |
|
||||||
:maxdepth: 4 |
|
||||||
:caption: Contents: |
|
||||||
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|
||||||
PyCTBN.PyCTBN |
|
||||||
examples |
|
||||||
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|
||||||
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|
||||||
|
|
||||||
Indices and tables |
|
||||||
================== |
|
||||||
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|
||||||
* :ref:`genindex` |
|
||||||
* :ref:`modindex` |
|
||||||
* :ref:`search` |
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<li class="toctree-l2"><a class="reference internal" href="examples.html#implementing-your-own-data-importer">Implementing your own data importer</a></li> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="examples.html#parameters-estimation-example">Parameters Estimation Example</a></li> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="examples.html#structure-estimation-example">Structure Estimation Example</a></li> |
|
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<section id="basic-main-module"> |
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<h1>basic_main module<a class="headerlink" href="#basic-main-module" title="Permalink to this headline">¶</a></h1> |
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<div id="content" class="hfeed entry-container hentry"> |
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||||||
<section id="examples"> |
|
||||||
<h1>Examples<a class="headerlink" href="#examples" title="Permalink to this headline">¶</a></h1> |
|
||||||
<section id="installation-usage"> |
|
||||||
<h2>Installation/Usage<a class="headerlink" href="#installation-usage" title="Permalink to this headline">¶</a></h2> |
|
||||||
<p>Download the latest release in .tar.gz or .whl format and simply use pip install to install it:</p> |
|
||||||
<div class="highlight-default notranslate"><div class="highlight"><pre><span></span>$pip install PyCTBN-2.2.tar.gz |
|
||||||
</pre></div> |
|
||||||
</div> |
|
||||||
</section> |
|
||||||
<section id="implementing-your-own-data-importer"> |
|
||||||
<h2>Implementing your own data importer<a class="headerlink" href="#implementing-your-own-data-importer" title="Permalink to this headline">¶</a></h2> |
|
||||||
<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="sd">"""This example demonstrates the implementation of a simple data importer the extends the class abstract importer to import data in csv format.</span> |
|
||||||
<span class="sd">The net in exam has three ternary nodes and no prior net structure.</span> |
|
||||||
<span class="sd">"""</span> |
|
||||||
|
|
||||||
<span class="kn">from</span> <span class="nn">PyCTBN</span> <span class="kn">import</span> <span class="n">AbstractImporter</span> |
|
||||||
|
|
||||||
<span class="k">class</span> <span class="nc">CSVImporter</span><span class="p">(</span><span class="n">AbstractImporter</span><span class="p">):</span> |
|
||||||
|
|
||||||
<span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">file_path</span><span class="p">):</span> |
|
||||||
<span class="bp">self</span><span class="o">.</span><span class="n">_df_samples_list</span> <span class="o">=</span> <span class="kc">None</span> |
|
||||||
<span class="nb">super</span><span class="p">(</span><span class="n">CSVImporter</span><span class="p">,</span> <span class="bp">self</span><span class="p">)</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="n">file_path</span><span class="p">)</span> |
|
||||||
|
|
||||||
<span class="k">def</span> <span class="nf">import_data</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span> |
|
||||||
<span class="bp">self</span><span class="o">.</span><span class="n">read_csv_file</span><span class="p">()</span> |
|
||||||
<span class="bp">self</span><span class="o">.</span><span class="n">_sorter</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">build_sorter</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_df_samples_list</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span> |
|
||||||
<span class="bp">self</span><span class="o">.</span><span class="n">import_variables</span><span class="p">()</span> |
|
||||||
<span class="bp">self</span><span class="o">.</span><span class="n">compute_row_delta_in_all_samples_frames</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_df_samples_list</span><span class="p">)</span> |
|
||||||
|
|
||||||
<span class="k">def</span> <span class="nf">read_csv_file</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span> |
|
||||||
<span class="n">df</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">read_csv</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_file_path</span><span class="p">)</span> |
|
||||||
<span class="n">df</span><span class="o">.</span><span class="n">drop</span><span class="p">(</span><span class="n">df</span><span class="o">.</span><span class="n">columns</span><span class="p">[[</span><span class="mi">0</span><span class="p">]],</span> <span class="n">axis</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">inplace</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span> |
|
||||||
<span class="bp">self</span><span class="o">.</span><span class="n">_df_samples_list</span> <span class="o">=</span> <span class="p">[</span><span class="n">df</span><span class="p">]</span> |
|
||||||
|
|
||||||
<span class="k">def</span> <span class="nf">import_variables</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span> |
|
||||||
<span class="n">values_list</span> <span class="o">=</span> <span class="p">[</span><span class="mi">3</span> <span class="k">for</span> <span class="n">var</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">_sorter</span><span class="p">]</span> |
|
||||||
<span class="c1"># initialize dict of lists</span> |
|
||||||
<span class="n">data</span> <span class="o">=</span> <span class="p">{</span><span class="s1">'Name'</span><span class="p">:</span><span class="bp">self</span><span class="o">.</span><span class="n">_sorter</span><span class="p">,</span> <span class="s1">'Value'</span><span class="p">:</span><span class="n">values_list</span><span class="p">}</span> |
|
||||||
<span class="c1"># Create the pandas DataFrame</span> |
|
||||||
<span class="bp">self</span><span class="o">.</span><span class="n">_df_variables</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">DataFrame</span><span class="p">(</span><span class="n">data</span><span class="p">)</span> |
|
||||||
|
|
||||||
<span class="k">def</span> <span class="nf">build_sorter</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">sample_frame</span><span class="p">:</span> <span class="n">pd</span><span class="o">.</span><span class="n">DataFrame</span><span class="p">)</span> <span class="o">-></span> <span class="n">typing</span><span class="o">.</span><span class="n">List</span><span class="p">:</span> |
|
||||||
<span class="k">return</span> <span class="nb">list</span><span class="p">(</span><span class="n">sample_frame</span><span class="o">.</span><span class="n">columns</span><span class="p">)[</span><span class="mi">1</span><span class="p">:]</span> |
|
||||||
|
|
||||||
<span class="k">def</span> <span class="nf">dataset_id</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-></span> <span class="nb">object</span><span class="p">:</span> |
|
||||||
<span class="k">pass</span> |
|
||||||
</pre></div> |
|
||||||
</div> |
|
||||||
</section> |
|
||||||
<section id="parameters-estimation-example"> |
|
||||||
<h2>Parameters Estimation Example<a class="headerlink" href="#parameters-estimation-example" title="Permalink to this headline">¶</a></h2> |
|
||||||
<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span> <span class="nn">PyCTBN</span> <span class="kn">import</span> <span class="n">JsonImporter</span> |
|
||||||
<span class="kn">from</span> <span class="nn">PyCTBN</span> <span class="kn">import</span> <span class="n">SamplePath</span> |
|
||||||
<span class="kn">from</span> <span class="nn">PyCTBN</span> <span class="kn">import</span> <span class="n">NetworkGraph</span> |
|
||||||
<span class="kn">from</span> <span class="nn">PyCTBN</span> <span class="kn">import</span> <span class="n">ParametersEstimator</span> |
|
||||||
|
|
||||||
|
|
||||||
<span class="k">def</span> <span class="nf">main</span><span class="p">():</span> |
|
||||||
<span class="n">read_files</span> <span class="o">=</span> <span class="n">glob</span><span class="o">.</span><span class="n">glob</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="s1">'./data'</span><span class="p">,</span> <span class="s2">"*.json"</span><span class="p">))</span> <span class="c1">#Take all json files in this dir</span> |
|
||||||
<span class="c1">#import data</span> |
|
||||||
<span class="n">importer</span> <span class="o">=</span> <span class="n">JsonImporter</span><span class="p">(</span><span class="n">read_files</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="s1">'samples'</span><span class="p">,</span> <span class="s1">'dyn.str'</span><span class="p">,</span> <span class="s1">'variables'</span><span class="p">,</span> <span class="s1">'Time'</span><span class="p">,</span> <span class="s1">'Name'</span><span class="p">)</span> |
|
||||||
<span class="n">importer</span><span class="o">.</span><span class="n">import_data</span><span class="p">(</span><span class="mi">0</span><span class="p">)</span> |
|
||||||
<span class="c1">#Create a SamplePath Obj passing an already filled AbstractImporter object</span> |
|
||||||
<span class="n">s1</span> <span class="o">=</span> <span class="n">SamplePath</span><span class="p">(</span><span class="n">importer</span><span class="p">)</span> |
|
||||||
<span class="c1">#Build The trajectries and the structural infos</span> |
|
||||||
<span class="n">s1</span><span class="o">.</span><span class="n">build_trajectories</span><span class="p">()</span> |
|
||||||
<span class="n">s1</span><span class="o">.</span><span class="n">build_structure</span><span class="p">()</span> |
|
||||||
<span class="nb">print</span><span class="p">(</span><span class="n">s1</span><span class="o">.</span><span class="n">structure</span><span class="o">.</span><span class="n">edges</span><span class="p">)</span> |
|
||||||
<span class="nb">print</span><span class="p">(</span><span class="n">s1</span><span class="o">.</span><span class="n">structure</span><span class="o">.</span><span class="n">nodes_values</span><span class="p">)</span> |
|
||||||
<span class="c1">#From The Structure Object build the Graph</span> |
|
||||||
<span class="n">g</span> <span class="o">=</span> <span class="n">NetworkGraph</span><span class="p">(</span><span class="n">s1</span><span class="o">.</span><span class="n">structure</span><span class="p">)</span> |
|
||||||
<span class="c1">#Select a node you want to estimate the parameters</span> |
|
||||||
<span class="n">node</span> <span class="o">=</span> <span class="n">g</span><span class="o">.</span><span class="n">nodes</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> |
|
||||||
<span class="nb">print</span><span class="p">(</span><span class="s2">"Node"</span><span class="p">,</span> <span class="n">node</span><span class="p">)</span> |
|
||||||
<span class="c1">#Init the _graph specifically for THIS node</span> |
|
||||||
<span class="n">g</span><span class="o">.</span><span class="n">fast_init</span><span class="p">(</span><span class="n">node</span><span class="p">)</span> |
|
||||||
<span class="c1">#Use SamplePath and Grpah to create a ParametersEstimator Object</span> |
|
||||||
<span class="n">p1</span> <span class="o">=</span> <span class="n">ParametersEstimator</span><span class="p">(</span><span class="n">s1</span><span class="o">.</span><span class="n">trajectories</span><span class="p">,</span> <span class="n">g</span><span class="p">)</span> |
|
||||||
<span class="c1">#Init the peEst specifically for THIS node</span> |
|
||||||
<span class="n">p1</span><span class="o">.</span><span class="n">fast_init</span><span class="p">(</span><span class="n">node</span><span class="p">)</span> |
|
||||||
<span class="c1">#Compute the parameters</span> |
|
||||||
<span class="n">sofc1</span> <span class="o">=</span> <span class="n">p1</span><span class="o">.</span><span class="n">compute_parameters_for_node</span><span class="p">(</span><span class="n">node</span><span class="p">)</span> |
|
||||||
<span class="c1">#The est CIMS are inside the resultant SetOfCIms Obj</span> |
|
||||||
<span class="nb">print</span><span class="p">(</span><span class="n">sofc1</span><span class="o">.</span><span class="n">actual_cims</span><span class="p">)</span> |
|
||||||
</pre></div> |
|
||||||
</div> |
|
||||||
</section> |
|
||||||
<section id="structure-estimation-example"> |
|
||||||
<h2>Structure Estimation Example<a class="headerlink" href="#structure-estimation-example" title="Permalink to this headline">¶</a></h2> |
|
||||||
<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span> <span class="nn">PyCTBN</span> <span class="kn">import</span> <span class="n">JsonImporter</span> |
|
||||||
<span class="kn">from</span> <span class="nn">PyCTBN</span> <span class="kn">import</span> <span class="n">SamplePath</span> |
|
||||||
<span class="kn">from</span> <span class="nn">PyCTBN</span> <span class="kn">import</span> <span class="n">StructureEstimator</span> |
|
||||||
|
|
||||||
<span class="k">def</span> <span class="nf">structure_estimation_example</span><span class="p">():</span> |
|
||||||
|
|
||||||
<span class="c1"># read the json files in ./data path</span> |
|
||||||
<span class="n">read_files</span> <span class="o">=</span> <span class="n">glob</span><span class="o">.</span><span class="n">glob</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="s1">'./data'</span><span class="p">,</span> <span class="s2">"*.json"</span><span class="p">))</span> |
|
||||||
<span class="c1"># initialize a JsonImporter object for the first file</span> |
|
||||||
<span class="n">importer</span> <span class="o">=</span> <span class="n">JsonImporter</span><span class="p">(</span><span class="n">read_files</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="s1">'samples'</span><span class="p">,</span> <span class="s1">'dyn.str'</span><span class="p">,</span> <span class="s1">'variables'</span><span class="p">,</span> <span class="s1">'Time'</span><span class="p">,</span> <span class="s1">'Name'</span><span class="p">)</span> |
|
||||||
<span class="c1"># import the data at index 0 of the outer json array</span> |
|
||||||
<span class="n">importer</span><span class="o">.</span><span class="n">import_data</span><span class="p">(</span><span class="mi">0</span><span class="p">)</span> |
|
||||||
<span class="c1"># construct a SamplePath Object passing a filled AbstractImporter</span> |
|
||||||
<span class="n">s1</span> <span class="o">=</span> <span class="n">SamplePath</span><span class="p">(</span><span class="n">importer</span><span class="p">)</span> |
|
||||||
<span class="c1"># build the trajectories</span> |
|
||||||
<span class="n">s1</span><span class="o">.</span><span class="n">build_trajectories</span><span class="p">()</span> |
|
||||||
<span class="c1"># build the real structure</span> |
|
||||||
<span class="n">s1</span><span class="o">.</span><span class="n">build_structure</span><span class="p">()</span> |
|
||||||
<span class="c1"># construct a StructureEstimator object</span> |
|
||||||
<span class="n">se1</span> <span class="o">=</span> <span class="n">StructureEstimator</span><span class="p">(</span><span class="n">s1</span><span class="p">,</span> <span class="mf">0.1</span><span class="p">,</span> <span class="mf">0.1</span><span class="p">)</span> |
|
||||||
<span class="c1"># call the ctpc algorithm</span> |
|
||||||
<span class="n">se1</span><span class="o">.</span><span class="n">ctpc_algorithm</span><span class="p">()</span> |
|
||||||
<span class="c1"># the adjacency matrix of the estimated structure</span> |
|
||||||
<span class="nb">print</span><span class="p">(</span><span class="n">se1</span><span class="o">.</span><span class="n">adjacency_matrix</span><span class="p">())</span> |
|
||||||
<span class="c1"># save results to a json file</span> |
|
||||||
<span class="n">se1</span><span class="o">.</span><span class="n">save_results</span><span class="p">()</span> |
|
||||||
</pre></div> |
|
||||||
</div> |
|
||||||
</section> |
|
||||||
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<li class="toctree-l2"><a class="reference internal" href="examples.html#parameters-estimation-example">Parameters Estimation Example</a></li> |
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<li class="toctree-l2"><a class="reference internal" href="examples.html#structure-estimation-example">Structure Estimation Example</a></li> |
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<section id="welcome-to-pyctbn-s-documentation"> |
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<h1>Welcome to PyCTBN’s documentation!<a class="headerlink" href="#welcome-to-pyctbn-s-documentation" title="Permalink to this headline">¶</a></h1> |
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<div class="toctree-wrapper compound"> |
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<p><span class="caption-text">Contents:</span></p> |
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<ul> |
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||||||
<li class="toctree-l1"><a class="reference internal" href="PyCTBN.PyCTBN.html">PyCTBN.PyCTBN package</a><ul> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.html#subpackages">Subpackages</a><ul> |
|
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<li class="toctree-l3"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html">PyCTBN.PyCTBN.estimators package</a><ul> |
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<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html#submodules">Submodules</a></li> |
|
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<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html#module-PyCTBN.PyCTBN.estimators.fam_score_calculator">PyCTBN.PyCTBN.estimators.fam_score_calculator module</a></li> |
|
||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html#module-PyCTBN.PyCTBN.estimators.parameters_estimator">PyCTBN.PyCTBN.estimators.parameters_estimator module</a></li> |
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<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html#module-PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator">PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator module</a></li> |
|
||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html#module-PyCTBN.PyCTBN.estimators.structure_estimator">PyCTBN.PyCTBN.estimators.structure_estimator module</a></li> |
|
||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html#module-PyCTBN.PyCTBN.estimators.structure_score_based_estimator">PyCTBN.PyCTBN.estimators.structure_score_based_estimator module</a></li> |
|
||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html#module-PyCTBN.PyCTBN.estimators">Module contents</a></li> |
|
||||||
</ul> |
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||||||
</li> |
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||||||
<li class="toctree-l3"><a class="reference internal" href="PyCTBN.PyCTBN.optimizers.html">PyCTBN.PyCTBN.optimizers package</a><ul> |
|
||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.optimizers.html#submodules">Submodules</a></li> |
|
||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.optimizers.html#module-PyCTBN.PyCTBN.optimizers.constraint_based_optimizer">PyCTBN.PyCTBN.optimizers.constraint_based_optimizer module</a></li> |
|
||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.optimizers.html#module-PyCTBN.PyCTBN.optimizers.hill_climbing_search">PyCTBN.PyCTBN.optimizers.hill_climbing_search module</a></li> |
|
||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.optimizers.html#module-PyCTBN.PyCTBN.optimizers.optimizer">PyCTBN.PyCTBN.optimizers.optimizer module</a></li> |
|
||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.optimizers.html#module-PyCTBN.PyCTBN.optimizers.tabu_search">PyCTBN.PyCTBN.optimizers.tabu_search module</a></li> |
|
||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.optimizers.html#module-PyCTBN.PyCTBN.optimizers">Module contents</a></li> |
|
||||||
</ul> |
|
||||||
</li> |
|
||||||
<li class="toctree-l3"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html">PyCTBN.PyCTBN.structure_graph package</a><ul> |
|
||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#submodules">Submodules</a></li> |
|
||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix">PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix module</a></li> |
|
||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.network_generator">PyCTBN.PyCTBN.structure_graph.network_generator module</a></li> |
|
||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.network_graph">PyCTBN.PyCTBN.structure_graph.network_graph module</a></li> |
|
||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.sample_path">PyCTBN.PyCTBN.structure_graph.sample_path module</a></li> |
|
||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.set_of_cims">PyCTBN.PyCTBN.structure_graph.set_of_cims module</a></li> |
|
||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.structure">PyCTBN.PyCTBN.structure_graph.structure module</a></li> |
|
||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.trajectory">PyCTBN.PyCTBN.structure_graph.trajectory module</a></li> |
|
||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.trajectory_generator">PyCTBN.PyCTBN.structure_graph.trajectory_generator module</a></li> |
|
||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph">Module contents</a></li> |
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</ul> |
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</li> |
|
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<li class="toctree-l3"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html">PyCTBN.PyCTBN.utility package</a><ul> |
|
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|
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|
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<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.abstract_importer">PyCTBN.PyCTBN.utility.abstract_importer module</a></li> |
|
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<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.cache">PyCTBN.PyCTBN.utility.cache module</a></li> |
|
||||||
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|
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<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.json_importer">PyCTBN.PyCTBN.utility.json_importer module</a></li> |
|
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<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.sample_importer">PyCTBN.PyCTBN.utility.sample_importer module</a></li> |
|
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<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility">Module contents</a></li> |
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<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.html#module-PyCTBN.PyCTBN">Module contents</a></li> |
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|
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<li class="toctree-l2"><a class="reference internal" href="examples.html#implementing-your-own-data-importer">Implementing your own data importer</a></li> |
|
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<li class="toctree-l2"><a class="reference internal" href="examples.html#parameters-estimation-example">Parameters Estimation Example</a></li> |
|
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<li class="toctree-l2"><a class="reference internal" href="examples.html#structure-estimation-example">Structure Estimation Example</a></li> |
|
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<h1>PyCTBN<a class="headerlink" href="#pyctbn" title="Permalink to this headline">¶</a></h1> |
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<li class="toctree-l1 current"><a class="current reference internal" href="#">PyCTBN.PyCTBN package</a><ul> |
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<section id="pyctbn-pyctbn-package"> |
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<h1>PyCTBN.PyCTBN package<a class="headerlink" href="#pyctbn-pyctbn-package" title="Permalink to this headline">¶</a></h1> |
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||||||
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<ul> |
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||||||
<li class="toctree-l1"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html">PyCTBN.PyCTBN.estimators package</a><ul> |
|
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<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html#submodules">Submodules</a></li> |
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||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html#module-PyCTBN.PyCTBN.estimators.fam_score_calculator">PyCTBN.PyCTBN.estimators.fam_score_calculator module</a></li> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html#module-PyCTBN.PyCTBN.estimators.parameters_estimator">PyCTBN.PyCTBN.estimators.parameters_estimator module</a></li> |
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||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html#module-PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator">PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator module</a></li> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html#module-PyCTBN.PyCTBN.estimators.structure_estimator">PyCTBN.PyCTBN.estimators.structure_estimator module</a></li> |
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||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html#module-PyCTBN.PyCTBN.estimators.structure_score_based_estimator">PyCTBN.PyCTBN.estimators.structure_score_based_estimator module</a></li> |
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||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html#module-PyCTBN.PyCTBN.estimators">Module contents</a></li> |
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|
||||||
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|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.optimizers.html#module-PyCTBN.PyCTBN.optimizers.hill_climbing_search">PyCTBN.PyCTBN.optimizers.hill_climbing_search module</a></li> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.optimizers.html#module-PyCTBN.PyCTBN.optimizers.optimizer">PyCTBN.PyCTBN.optimizers.optimizer module</a></li> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.optimizers.html#module-PyCTBN.PyCTBN.optimizers.tabu_search">PyCTBN.PyCTBN.optimizers.tabu_search module</a></li> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.optimizers.html#module-PyCTBN.PyCTBN.optimizers">Module contents</a></li> |
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||||||
</ul> |
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||||||
</li> |
|
||||||
<li class="toctree-l1"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html">PyCTBN.PyCTBN.structure_graph package</a><ul> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#submodules">Submodules</a></li> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix">PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix module</a></li> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.network_generator">PyCTBN.PyCTBN.structure_graph.network_generator module</a></li> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.network_graph">PyCTBN.PyCTBN.structure_graph.network_graph module</a></li> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.sample_path">PyCTBN.PyCTBN.structure_graph.sample_path module</a></li> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.set_of_cims">PyCTBN.PyCTBN.structure_graph.set_of_cims module</a></li> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.structure">PyCTBN.PyCTBN.structure_graph.structure module</a></li> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.trajectory">PyCTBN.PyCTBN.structure_graph.trajectory module</a></li> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.trajectory_generator">PyCTBN.PyCTBN.structure_graph.trajectory_generator module</a></li> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph">Module contents</a></li> |
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||||||
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<li class="toctree-l1"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html">PyCTBN.PyCTBN.utility package</a><ul> |
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<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#submodules">Submodules</a></li> |
|
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<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.abstract_exporter">PyCTBN.PyCTBN.utility.abstract_exporter module</a></li> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.abstract_importer">PyCTBN.PyCTBN.utility.abstract_importer module</a></li> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.cache">PyCTBN.PyCTBN.utility.cache module</a></li> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.json_exporter">PyCTBN.PyCTBN.utility.json_exporter module</a></li> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.json_importer">PyCTBN.PyCTBN.utility.json_importer module</a></li> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.sample_importer">PyCTBN.PyCTBN.utility.sample_importer module</a></li> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility">Module contents</a></li> |
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<li class="toctree-l1 current"><a class="reference internal" href="PyCTBN.PyCTBN.html">PyCTBN.PyCTBN package</a><ul class="current"> |
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<li class="toctree-l2 current"><a class="reference internal" href="PyCTBN.PyCTBN.html#subpackages">Subpackages</a></li> |
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<li class="toctree-l2"><a class="reference internal" href="examples.html#implementing-your-own-data-importer">Implementing your own data importer</a></li> |
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<li class="toctree-l2"><a class="reference internal" href="examples.html#parameters-estimation-example">Parameters Estimation Example</a></li> |
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<li class="toctree-l2"><a class="reference internal" href="examples.html#structure-estimation-example">Structure Estimation Example</a></li> |
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<div id="content" class="hfeed entry-container hentry"> |
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<section id="pyctbn-pyctbn-utility-package"> |
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||||||
<h1>PyCTBN.PyCTBN.utility package<a class="headerlink" href="#pyctbn-pyctbn-utility-package" title="Permalink to this headline">¶</a></h1> |
|
||||||
<section id="submodules"> |
|
||||||
<h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this headline">¶</a></h2> |
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</section> |
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||||||
<section id="module-PyCTBN.PyCTBN.utility.abstract_exporter"> |
|
||||||
<span id="pyctbn-pyctbn-utility-abstract-exporter-module"></span><h2>PyCTBN.PyCTBN.utility.abstract_exporter module<a class="headerlink" href="#module-PyCTBN.PyCTBN.utility.abstract_exporter" title="Permalink to this headline">¶</a></h2> |
|
||||||
<dl class="py class"> |
|
||||||
<dt id="PyCTBN.PyCTBN.utility.abstract_exporter.AbstractExporter"> |
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||||||
<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.PyCTBN.utility.abstract_exporter.</code><code class="sig-name descname">AbstractExporter</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">variables</span><span class="p">:</span> <span class="n">pandas.core.frame.DataFrame</span> <span class="o">=</span> <span class="default_value">None</span></em>, <em class="sig-param"><span class="n">dyn_str</span><span class="p">:</span> <span class="n">pandas.core.frame.DataFrame</span> <span class="o">=</span> <span class="default_value">None</span></em>, <em class="sig-param"><span class="n">dyn_cims</span><span class="p">:</span> <span class="n">dict</span> <span class="o">=</span> <span class="default_value">None</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.abstract_exporter.AbstractExporter" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">abc.ABC</span></code></p> |
|
||||||
<p>Abstract class that exposes the methods to save in json format a network information |
|
||||||
along with one or more trajectories generated basing on it</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><ul class="simple"> |
|
||||||
<li><p><strong>_variables</strong> (<em>pandas.DataFrame</em>) – Dataframe containing the nodes labels and cardinalities</p></li> |
|
||||||
<li><p><strong>_dyn_str</strong> (<em>pandas.DataFrame</em>) – Dataframe containing the structure of the network (edges)</p></li> |
|
||||||
<li><p><strong>_dyn_cims</strong> (<em>dict</em>) – It contains, for every variable (label is the key), the SetOfCims object related to it</p></li> |
|
||||||
<li><p><strong>_trajectories</strong> (<em>List</em>) – List of trajectories, that can be added subsequently</p></li> |
|
||||||
</ul> |
|
||||||
</dd> |
|
||||||
</dl> |
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||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.utility.abstract_exporter.AbstractExporter.add_trajectory"> |
|
||||||
<code class="sig-name descname">add_trajectory</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">trajectory</span><span class="p">:</span> <span class="n">list</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.abstract_exporter.AbstractExporter.add_trajectory" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Add a new trajectory to the current list</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><p><strong>trajectory</strong> (<em>pandas.DataFrame</em>) – The trajectory to add</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
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||||||
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|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.utility.abstract_exporter.AbstractExporter.out_file"> |
|
||||||
<em class="property">abstract </em><code class="sig-name descname">out_file</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">filename</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.abstract_exporter.AbstractExporter.out_file" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><dl class="simple"> |
|
||||||
<dt>Create a file in current directory and write on it the previously added data </dt><dd><p>(variables, dyn_str, dyn_cims and trajectories)</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><p><strong>filename</strong> (<em>string</em>) – Name of the output file (it must include json extension)</p> |
|
||||||
</dd> |
|
||||||
</dl> |
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||||||
</dd></dl> |
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||||||
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||||||
</dd></dl> |
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||||||
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||||||
</section> |
|
||||||
<section id="module-PyCTBN.PyCTBN.utility.abstract_importer"> |
|
||||||
<span id="pyctbn-pyctbn-utility-abstract-importer-module"></span><h2>PyCTBN.PyCTBN.utility.abstract_importer module<a class="headerlink" href="#module-PyCTBN.PyCTBN.utility.abstract_importer" title="Permalink to this headline">¶</a></h2> |
|
||||||
<dl class="py class"> |
|
||||||
<dt id="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter"> |
|
||||||
<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.PyCTBN.utility.abstract_importer.</code><code class="sig-name descname">AbstractImporter</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">file_path</span><span class="p">:</span> <span class="n">str</span> <span class="o">=</span> <span class="default_value">None</span></em>, <em class="sig-param"><span class="n">trajectory_list</span><span class="p">:</span> <span class="n">Union<span class="p">[</span>pandas.core.frame.DataFrame<span class="p">, </span>numpy.ndarray<span class="p">]</span></span> <span class="o">=</span> <span class="default_value">None</span></em>, <em class="sig-param"><span class="n">variables</span><span class="p">:</span> <span class="n">pandas.core.frame.DataFrame</span> <span class="o">=</span> <span class="default_value">None</span></em>, <em class="sig-param"><span class="n">prior_net_structure</span><span class="p">:</span> <span class="n">pandas.core.frame.DataFrame</span> <span class="o">=</span> <span class="default_value">None</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">abc.ABC</span></code></p> |
|
||||||
<p>Abstract class that exposes all the necessary methods to process the trajectories and the net structure.</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><ul class="simple"> |
|
||||||
<li><p><strong>file_path</strong> (<em>str</em>) – the file path, or dataset name if you import already processed data</p></li> |
|
||||||
<li><p><strong>trajectory_list</strong> (<em>typing.Union</em><em>[</em><em>pandas.DataFrame</em><em>, </em><em>numpy.ndarray</em><em>]</em>) – Dataframe or numpy array containing the concatenation of all the processed trajectories</p></li> |
|
||||||
<li><p><strong>variables</strong> (<em>pandas.DataFrame</em>) – Dataframe containing the nodes labels and cardinalities</p></li> |
|
||||||
</ul> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">Prior_net_structure</dt> |
|
||||||
<dd class="field-even"><p>Dataframe containing the structure of the network (edges)</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-odd">_sorter</dt> |
|
||||||
<dd class="field-odd"><p>A list containing the variables labels in the SAME order as the columns in <code class="docutils literal notranslate"><span class="pre">concatenated_samples</span></code></p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
<div class="admonition warning"> |
|
||||||
<p class="admonition-title">Warning</p> |
|
||||||
<p>The parameters <code class="docutils literal notranslate"><span class="pre">variables</span></code> and <code class="docutils literal notranslate"><span class="pre">prior_net_structure</span></code> HAVE to be properly constructed |
|
||||||
as Pandas Dataframes with the following structure: |
|
||||||
Header of _df_structure = [From_Node | To_Node] |
|
||||||
Header of _df_variables = [Variable_Label | Variable_Cardinality] |
|
||||||
See the tutorial on how to construct a correct <code class="docutils literal notranslate"><span class="pre">concatenated_samples</span></code> Dataframe/ndarray.</p> |
|
||||||
</div> |
|
||||||
<div class="admonition note"> |
|
||||||
<p class="admonition-title">Note</p> |
|
||||||
<p>See :class:<code class="docutils literal notranslate"><span class="pre">JsonImporter</span></code> for an example implementation</p> |
|
||||||
</div> |
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.build_list_of_samples_array"> |
|
||||||
<code class="sig-name descname">build_list_of_samples_array</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">concatenated_sample</span><span class="p">:</span> <span class="n">pandas.core.frame.DataFrame</span></em><span class="sig-paren">)</span> → List<a class="headerlink" href="#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.build_list_of_samples_array" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Builds a List containing the the delta times numpy array, and the complete transitions matrix</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><p><strong>concatenated_sample</strong> (<em>pandas.Dataframe</em>) – the dataframe/array from which the time, and transitions matrix have to be extracted |
|
||||||
and converted</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">Returns</dt> |
|
||||||
<dd class="field-even"><p>the resulting list of numpy arrays</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-odd">Return type</dt> |
|
||||||
<dd class="field-odd"><p>List</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.build_sorter"> |
|
||||||
<em class="property">abstract </em><code class="sig-name descname">build_sorter</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">trajecory_header</span><span class="p">:</span> <span class="n">object</span></em><span class="sig-paren">)</span> → List<a class="headerlink" href="#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.build_sorter" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Initializes the <code class="docutils literal notranslate"><span class="pre">_sorter</span></code> class member from a trajectory dataframe, exctracting the header of the frame |
|
||||||
and keeping ONLY the variables symbolic labels, cutting out the time label in the header.</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><p><strong>trajecory_header</strong> (<em>object</em>) – an object that will be used to define the header</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">Returns</dt> |
|
||||||
<dd class="field-even"><p>A list containing the processed header.</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-odd">Return type</dt> |
|
||||||
<dd class="field-odd"><p>List</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.clear_concatenated_frame"> |
|
||||||
<code class="sig-name descname">clear_concatenated_frame</code><span class="sig-paren">(</span><span class="sig-paren">)</span> → None<a class="headerlink" href="#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.clear_concatenated_frame" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Removes all values in the dataframe concatenated_samples.</p> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.compute_row_delta_in_all_samples_frames"> |
|
||||||
<code class="sig-name descname">compute_row_delta_in_all_samples_frames</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">df_samples_list</span><span class="p">:</span> <span class="n">List</span></em><span class="sig-paren">)</span> → None<a class="headerlink" href="#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.compute_row_delta_in_all_samples_frames" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Calls the method <code class="docutils literal notranslate"><span class="pre">compute_row_delta_sigle_samples_frame</span></code> on every dataframe present in the list |
|
||||||
<code class="docutils literal notranslate"><span class="pre">df_samples_list</span></code>. |
|
||||||
Concatenates the result in the dataframe <code class="docutils literal notranslate"><span class="pre">concatanated_samples</span></code></p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><p><strong>df_samples_list</strong> (<em>List</em>) – the datframe’s list to be processed and concatenated</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
<div class="admonition warning"> |
|
||||||
<p class="admonition-title">Warning</p> |
|
||||||
<p>The Dataframe sample_frame has to follow the column structure of this header: |
|
||||||
Header of sample_frame = [Time | Variable values] |
|
||||||
The class member self._sorter HAS to be properly INITIALIZED (See class members definition doc)</p> |
|
||||||
</div> |
|
||||||
<div class="admonition note"> |
|
||||||
<p class="admonition-title">Note</p> |
|
||||||
<p>After the call of this method the class member <code class="docutils literal notranslate"><span class="pre">concatanated_samples</span></code> will contain all processed |
|
||||||
and merged trajectories</p> |
|
||||||
</div> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.compute_row_delta_sigle_samples_frame"> |
|
||||||
<code class="sig-name descname">compute_row_delta_sigle_samples_frame</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">sample_frame</span><span class="p">:</span> <span class="n">pandas.core.frame.DataFrame</span></em>, <em class="sig-param"><span class="n">columns_header</span><span class="p">:</span> <span class="n">List</span></em>, <em class="sig-param"><span class="n">shifted_cols_header</span><span class="p">:</span> <span class="n">List</span></em><span class="sig-paren">)</span> → pandas.core.frame.DataFrame<a class="headerlink" href="#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.compute_row_delta_sigle_samples_frame" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Computes the difference between each value present in th time column. |
|
||||||
Copies and shift by one position up all the values present in the remaining columns.</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><ul class="simple"> |
|
||||||
<li><p><strong>sample_frame</strong> (<em>pandas.Dataframe</em>) – the traj to be processed</p></li> |
|
||||||
<li><p><strong>columns_header</strong> (<em>List</em>) – the original header of sample_frame</p></li> |
|
||||||
<li><p><strong>shifted_cols_header</strong> (<em>List</em>) – a copy of columns_header with changed names of the contents</p></li> |
|
||||||
</ul> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">Returns</dt> |
|
||||||
<dd class="field-even"><p>The processed dataframe</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-odd">Return type</dt> |
|
||||||
<dd class="field-odd"><p>pandas.Dataframe</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
<div class="admonition warning"> |
|
||||||
<p class="admonition-title">Warning</p> |
|
||||||
<p>the Dataframe <code class="docutils literal notranslate"><span class="pre">sample_frame</span></code> has to follow the column structure of this header: |
|
||||||
Header of sample_frame = [Time | Variable values]</p> |
|
||||||
</div> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.concatenated_samples"> |
|
||||||
<em class="property">property </em><code class="sig-name descname">concatenated_samples</code><a class="headerlink" href="#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.concatenated_samples" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.dataset_id"> |
|
||||||
<em class="property">abstract </em><code class="sig-name descname">dataset_id</code><span class="sig-paren">(</span><span class="sig-paren">)</span> → object<a class="headerlink" href="#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.dataset_id" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>If the original dataset contains multiple dataset, this method returns a unique id to identify the current |
|
||||||
dataset</p> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.file_path"> |
|
||||||
<em class="property">property </em><code class="sig-name descname">file_path</code><a class="headerlink" href="#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.file_path" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.sorter"> |
|
||||||
<em class="property">property </em><code class="sig-name descname">sorter</code><a class="headerlink" href="#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.sorter" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.structure"> |
|
||||||
<em class="property">property </em><code class="sig-name descname">structure</code><a class="headerlink" href="#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.structure" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.variables"> |
|
||||||
<em class="property">property </em><code class="sig-name descname">variables</code><a class="headerlink" href="#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.variables" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
</section> |
|
||||||
<section id="module-PyCTBN.PyCTBN.utility.cache"> |
|
||||||
<span id="pyctbn-pyctbn-utility-cache-module"></span><h2>PyCTBN.PyCTBN.utility.cache module<a class="headerlink" href="#module-PyCTBN.PyCTBN.utility.cache" title="Permalink to this headline">¶</a></h2> |
|
||||||
<dl class="py class"> |
|
||||||
<dt id="PyCTBN.PyCTBN.utility.cache.Cache"> |
|
||||||
<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.PyCTBN.utility.cache.</code><code class="sig-name descname">Cache</code><a class="headerlink" href="#PyCTBN.PyCTBN.utility.cache.Cache" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></p> |
|
||||||
<p>This class acts as a cache of <code class="docutils literal notranslate"><span class="pre">SetOfCims</span></code> objects for a node.</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">__list_of_sets_of_parents</dt> |
|
||||||
<dd class="field-odd"><p>a list of <code class="docutils literal notranslate"><span class="pre">Sets</span></code> objects of the parents to which the cim in cache at SAME |
|
||||||
index is related</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">__actual_cache</dt> |
|
||||||
<dd class="field-even"><p>a list of setOfCims objects</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.utility.cache.Cache.clear"> |
|
||||||
<code class="sig-name descname">clear</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.cache.Cache.clear" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Clear the contents both of <code class="docutils literal notranslate"><span class="pre">__actual_cache</span></code> and <code class="docutils literal notranslate"><span class="pre">__list_of_sets_of_parents</span></code>.</p> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.utility.cache.Cache.find"> |
|
||||||
<code class="sig-name descname">find</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">parents_comb</span><span class="p">:</span> <span class="n">Set</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.cache.Cache.find" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Tries to find in cache given the symbolic parents combination <code class="docutils literal notranslate"><span class="pre">parents_comb</span></code> the <code class="docutils literal notranslate"><span class="pre">SetOfCims</span></code> |
|
||||||
related to that <code class="docutils literal notranslate"><span class="pre">parents_comb</span></code>.</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><p><strong>parents_comb</strong> (<em>Set</em>) – the parents related to that <code class="docutils literal notranslate"><span class="pre">SetOfCims</span></code></p> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">Returns</dt> |
|
||||||
<dd class="field-even"><p>A <code class="docutils literal notranslate"><span class="pre">SetOfCims</span></code> object if the <code class="docutils literal notranslate"><span class="pre">parents_comb</span></code> index is found in <code class="docutils literal notranslate"><span class="pre">__list_of_sets_of_parents</span></code>. |
|
||||||
None otherwise.</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-odd">Return type</dt> |
|
||||||
<dd class="field-odd"><p><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims" title="PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims">SetOfCims</a></p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.utility.cache.Cache.put"> |
|
||||||
<code class="sig-name descname">put</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">parents_comb</span><span class="p">:</span> <span class="n">Set</span></em>, <em class="sig-param"><span class="n">socim</span><span class="p">:</span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims" title="PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims">PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims</a></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.cache.Cache.put" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Place in cache the <code class="docutils literal notranslate"><span class="pre">SetOfCims</span></code> object, and the related symbolic index <code class="docutils literal notranslate"><span class="pre">parents_comb</span></code> in |
|
||||||
<code class="docutils literal notranslate"><span class="pre">__list_of_sets_of_parents</span></code>.</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><ul class="simple"> |
|
||||||
<li><p><strong>parents_comb</strong> (<em>Set</em>) – the symbolic set index</p></li> |
|
||||||
<li><p><strong>socim</strong> (<a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims" title="PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims"><em>SetOfCims</em></a>) – the related SetOfCims object</p></li> |
|
||||||
</ul> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
</section> |
|
||||||
<section id="module-PyCTBN.PyCTBN.utility.json_exporter"> |
|
||||||
<span id="pyctbn-pyctbn-utility-json-exporter-module"></span><h2>PyCTBN.PyCTBN.utility.json_exporter module<a class="headerlink" href="#module-PyCTBN.PyCTBN.utility.json_exporter" title="Permalink to this headline">¶</a></h2> |
|
||||||
<dl class="py class"> |
|
||||||
<dt id="PyCTBN.PyCTBN.utility.json_exporter.JsonExporter"> |
|
||||||
<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.PyCTBN.utility.json_exporter.</code><code class="sig-name descname">JsonExporter</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">variables</span><span class="p">:</span> <span class="n">pandas.core.frame.DataFrame</span> <span class="o">=</span> <span class="default_value">None</span></em>, <em class="sig-param"><span class="n">dyn_str</span><span class="p">:</span> <span class="n">pandas.core.frame.DataFrame</span> <span class="o">=</span> <span class="default_value">None</span></em>, <em class="sig-param"><span class="n">dyn_cims</span><span class="p">:</span> <span class="n">dict</span> <span class="o">=</span> <span class="default_value">None</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.json_exporter.JsonExporter" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Bases: <a class="reference internal" href="#PyCTBN.PyCTBN.utility.abstract_exporter.AbstractExporter" title="PyCTBN.PyCTBN.utility.abstract_exporter.AbstractExporter"><code class="xref py py-class docutils literal notranslate"><span class="pre">PyCTBN.PyCTBN.utility.abstract_exporter.AbstractExporter</span></code></a></p> |
|
||||||
<p>Provides the methods to save in json format a network information |
|
||||||
along with one or more trajectories generated basing on it</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><ul class="simple"> |
|
||||||
<li><p><strong>_variables</strong> (<em>pandas.DataFrame</em>) – Dataframe containing the nodes labels and cardinalities</p></li> |
|
||||||
<li><p><strong>_dyn_str</strong> (<em>pandas.DataFrame</em>) – Dataframe containing the structure of the network (edges)</p></li> |
|
||||||
<li><p><strong>_dyn_cims</strong> (<em>dict</em>) – It contains, for every variable (label is the key), the SetOfCims object related to it</p></li> |
|
||||||
<li><p><strong>_trajectories</strong> (<em>List</em>) – List of trajectories, that can be added subsequently</p></li> |
|
||||||
</ul> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.utility.json_exporter.JsonExporter.cims_to_json"> |
|
||||||
<code class="sig-name descname">cims_to_json</code><span class="sig-paren">(</span><span class="sig-paren">)</span> → dict<a class="headerlink" href="#PyCTBN.PyCTBN.utility.json_exporter.JsonExporter.cims_to_json" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd></dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.utility.json_exporter.JsonExporter.out_file"> |
|
||||||
<code class="sig-name descname">out_file</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">filename</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.json_exporter.JsonExporter.out_file" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><dl class="simple"> |
|
||||||
<dt>Create a file in current directory and write on it the previously added data </dt><dd><p>(variables, dyn_str, dyn_cims and trajectories)</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><p><strong>filename</strong> (<em>string</em>) – Name of the output file (it must include json extension)</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
</section> |
|
||||||
<section id="module-PyCTBN.PyCTBN.utility.json_importer"> |
|
||||||
<span id="pyctbn-pyctbn-utility-json-importer-module"></span><h2>PyCTBN.PyCTBN.utility.json_importer module<a class="headerlink" href="#module-PyCTBN.PyCTBN.utility.json_importer" title="Permalink to this headline">¶</a></h2> |
|
||||||
<dl class="py class"> |
|
||||||
<dt id="PyCTBN.PyCTBN.utility.json_importer.JsonImporter"> |
|
||||||
<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.PyCTBN.utility.json_importer.</code><code class="sig-name descname">JsonImporter</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">file_path</span><span class="p">:</span> <span class="n">str</span></em>, <em class="sig-param"><span class="n">samples_label</span><span class="p">:</span> <span class="n">str</span></em>, <em class="sig-param"><span class="n">structure_label</span><span class="p">:</span> <span class="n">str</span></em>, <em class="sig-param"><span class="n">variables_label</span><span class="p">:</span> <span class="n">str</span></em>, <em class="sig-param"><span class="n">time_key</span><span class="p">:</span> <span class="n">str</span></em>, <em class="sig-param"><span class="n">variables_key</span><span class="p">:</span> <span class="n">str</span></em>, <em class="sig-param"><span class="n">cims_label</span><span class="p">:</span> <span class="n">str</span> <span class="o">=</span> <span class="default_value">None</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.json_importer.JsonImporter" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Bases: <a class="reference internal" href="#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter" title="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter"><code class="xref py py-class docutils literal notranslate"><span class="pre">PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter</span></code></a></p> |
|
||||||
<p>Implements the abstracts methods of AbstractImporter and adds all the necessary methods to process and prepare |
|
||||||
the data in json extension.</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><ul class="simple"> |
|
||||||
<li><p><strong>file_path</strong> (<em>string</em>) – the path of the file that contains tha data to be imported</p></li> |
|
||||||
<li><p><strong>samples_label</strong> (<em>string</em>) – the reference key for the samples in the trajectories</p></li> |
|
||||||
<li><p><strong>structure_label</strong> (<em>string</em>) – the reference key for the structure of the network data</p></li> |
|
||||||
<li><p><strong>variables_label</strong> (<em>string</em>) – the reference key for the cardinalites of the nodes data</p></li> |
|
||||||
<li><p><strong>time_key</strong> (<em>string</em>) – the key used to identify the timestamps in each trajectory</p></li> |
|
||||||
<li><p><strong>variables_key</strong> (<em>string</em>) – the key used to identify the names of the variables in the net</p></li> |
|
||||||
</ul> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">_array_indx</dt> |
|
||||||
<dd class="field-even"><p>the index of the outer JsonArray to extract the data from</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-odd">_df_samples_list</dt> |
|
||||||
<dd class="field-odd"><p>a Dataframe list in which every dataframe contains a trajectory</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">_raw_data</dt> |
|
||||||
<dd class="field-even"><p>The raw contents of the json file to import</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.utility.json_importer.JsonImporter.build_sorter"> |
|
||||||
<code class="sig-name descname">build_sorter</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">sample_frame</span><span class="p">:</span> <span class="n">pandas.core.frame.DataFrame</span></em><span class="sig-paren">)</span> → List<a class="headerlink" href="#PyCTBN.PyCTBN.utility.json_importer.JsonImporter.build_sorter" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Implements the abstract method build_sorter of the <code class="xref py py-class docutils literal notranslate"><span class="pre">AbstractImporter</span></code> for this dataset.</p> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.utility.json_importer.JsonImporter.clear_data_frame_list"> |
|
||||||
<code class="sig-name descname">clear_data_frame_list</code><span class="sig-paren">(</span><span class="sig-paren">)</span> → None<a class="headerlink" href="#PyCTBN.PyCTBN.utility.json_importer.JsonImporter.clear_data_frame_list" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Removes all values present in the dataframes in the list <code class="docutils literal notranslate"><span class="pre">_df_samples_list</span></code>.</p> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.utility.json_importer.JsonImporter.dataset_id"> |
|
||||||
<code class="sig-name descname">dataset_id</code><span class="sig-paren">(</span><span class="sig-paren">)</span> → object<a class="headerlink" href="#PyCTBN.PyCTBN.utility.json_importer.JsonImporter.dataset_id" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>If the original dataset contains multiple dataset, this method returns a unique id to identify the current |
|
||||||
dataset</p> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.utility.json_importer.JsonImporter.import_data"> |
|
||||||
<code class="sig-name descname">import_data</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">indx</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">0</span></em><span class="sig-paren">)</span> → None<a class="headerlink" href="#PyCTBN.PyCTBN.utility.json_importer.JsonImporter.import_data" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Implements the abstract method of <code class="xref py py-class docutils literal notranslate"><span class="pre">AbstractImporter</span></code>.</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><p><strong>indx</strong> (<em>int</em>) – the index of the outer JsonArray to extract the data from, default to 0</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.utility.json_importer.JsonImporter.import_sampled_cims"> |
|
||||||
<code class="sig-name descname">import_sampled_cims</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">raw_data</span><span class="p">:</span> <span class="n">List</span></em>, <em class="sig-param"><span class="n">indx</span><span class="p">:</span> <span class="n">int</span></em>, <em class="sig-param"><span class="n">cims_key</span><span class="p">:</span> <span class="n">str</span></em><span class="sig-paren">)</span> → Dict<a class="headerlink" href="#PyCTBN.PyCTBN.utility.json_importer.JsonImporter.import_sampled_cims" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Imports the synthetic CIMS in the dataset in a dictionary, using variables labels |
|
||||||
as keys for the set of CIMS of a particular node.</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><ul class="simple"> |
|
||||||
<li><p><strong>raw_data</strong> (<em>List</em>) – List of Dicts</p></li> |
|
||||||
<li><p><strong>indx</strong> (<em>int</em>) – The index of the array from which the data have to be extracted</p></li> |
|
||||||
<li><p><strong>cims_key</strong> (<em>string</em>) – the key where the json object cims are placed</p></li> |
|
||||||
</ul> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">Returns</dt> |
|
||||||
<dd class="field-even"><p>a dictionary containing the sampled CIMS for all the variables in the net</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-odd">Return type</dt> |
|
||||||
<dd class="field-odd"><p>Dictionary</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.utility.json_importer.JsonImporter.import_structure"> |
|
||||||
<code class="sig-name descname">import_structure</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">raw_data</span><span class="p">:</span> <span class="n">List</span></em><span class="sig-paren">)</span> → pandas.core.frame.DataFrame<a class="headerlink" href="#PyCTBN.PyCTBN.utility.json_importer.JsonImporter.import_structure" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Imports in a dataframe the data in the list raw_data at the key <code class="docutils literal notranslate"><span class="pre">_structure_label</span></code></p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><p><strong>raw_data</strong> (<em>List</em>) – List of Dicts</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">Returns</dt> |
|
||||||
<dd class="field-even"><p>Dataframe containg the starting node a ending node of every arc of the network</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-odd">Return type</dt> |
|
||||||
<dd class="field-odd"><p>pandas.Dataframe</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.utility.json_importer.JsonImporter.import_trajectories"> |
|
||||||
<code class="sig-name descname">import_trajectories</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">raw_data</span><span class="p">:</span> <span class="n">List</span></em><span class="sig-paren">)</span> → List<a class="headerlink" href="#PyCTBN.PyCTBN.utility.json_importer.JsonImporter.import_trajectories" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Imports the trajectories from the list of dicts <code class="docutils literal notranslate"><span class="pre">raw_data</span></code>.</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><p><strong>raw_data</strong> (<em>List</em>) – List of Dicts</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">Returns</dt> |
|
||||||
<dd class="field-even"><p>List of dataframes containing all the trajectories</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-odd">Return type</dt> |
|
||||||
<dd class="field-odd"><p>List</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.utility.json_importer.JsonImporter.import_variables"> |
|
||||||
<code class="sig-name descname">import_variables</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">raw_data</span><span class="p">:</span> <span class="n">List</span></em><span class="sig-paren">)</span> → pandas.core.frame.DataFrame<a class="headerlink" href="#PyCTBN.PyCTBN.utility.json_importer.JsonImporter.import_variables" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Imports the data in <code class="docutils literal notranslate"><span class="pre">raw_data</span></code> at the key <code class="docutils literal notranslate"><span class="pre">_variables_label</span></code>.</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><p><strong>raw_data</strong> (<em>List</em>) – List of Dicts</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">Returns</dt> |
|
||||||
<dd class="field-even"><p>Datframe containg the variables simbolic labels and their cardinalities</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-odd">Return type</dt> |
|
||||||
<dd class="field-odd"><p>pandas.Dataframe</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.utility.json_importer.JsonImporter.normalize_trajectories"> |
|
||||||
<code class="sig-name descname">normalize_trajectories</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">raw_data</span><span class="p">:</span> <span class="n">List</span></em>, <em class="sig-param"><span class="n">indx</span><span class="p">:</span> <span class="n">int</span></em>, <em class="sig-param"><span class="n">trajectories_key</span><span class="p">:</span> <span class="n">str</span></em><span class="sig-paren">)</span> → List<a class="headerlink" href="#PyCTBN.PyCTBN.utility.json_importer.JsonImporter.normalize_trajectories" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Extracts the trajectories in <code class="docutils literal notranslate"><span class="pre">raw_data</span></code> at the index <code class="docutils literal notranslate"><span class="pre">index</span></code> at the key <code class="docutils literal notranslate"><span class="pre">trajectories</span> <span class="pre">key</span></code>.</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><ul class="simple"> |
|
||||||
<li><p><strong>raw_data</strong> (<em>List</em>) – List of Dicts</p></li> |
|
||||||
<li><p><strong>indx</strong> (<em>int</em>) – The index of the array from which the data have to be extracted</p></li> |
|
||||||
<li><p><strong>trajectories_key</strong> (<em>string</em>) – the key of the trajectories objects</p></li> |
|
||||||
</ul> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">Returns</dt> |
|
||||||
<dd class="field-even"><p>A list of daframes containg the trajectories</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-odd">Return type</dt> |
|
||||||
<dd class="field-odd"><p>List</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.utility.json_importer.JsonImporter.one_level_normalizing"> |
|
||||||
<code class="sig-name descname">one_level_normalizing</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">raw_data</span><span class="p">:</span> <span class="n">List</span></em>, <em class="sig-param"><span class="n">indx</span><span class="p">:</span> <span class="n">int</span></em>, <em class="sig-param"><span class="n">key</span><span class="p">:</span> <span class="n">str</span></em><span class="sig-paren">)</span> → pandas.core.frame.DataFrame<a class="headerlink" href="#PyCTBN.PyCTBN.utility.json_importer.JsonImporter.one_level_normalizing" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Extracts the one-level nested data in the list <code class="docutils literal notranslate"><span class="pre">raw_data</span></code> at the index <code class="docutils literal notranslate"><span class="pre">indx</span></code> at the key <code class="docutils literal notranslate"><span class="pre">key</span></code>.</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
|
||||||
<dd class="field-odd"><ul class="simple"> |
|
||||||
<li><p><strong>raw_data</strong> (<em>List</em>) – List of Dicts</p></li> |
|
||||||
<li><p><strong>indx</strong> (<em>int</em>) – The index of the array from which the data have to be extracted</p></li> |
|
||||||
<li><p><strong>key</strong> (<em>string</em>) – the key for the Dicts from which exctract data</p></li> |
|
||||||
</ul> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">Returns</dt> |
|
||||||
<dd class="field-even"><p>A normalized dataframe</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-odd">Return type</dt> |
|
||||||
<dd class="field-odd"><p>pandas.Datframe</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
<dl class="py method"> |
|
||||||
<dt id="PyCTBN.PyCTBN.utility.json_importer.JsonImporter.read_json_file"> |
|
||||||
<code class="sig-name descname">read_json_file</code><span class="sig-paren">(</span><span class="sig-paren">)</span> → List<a class="headerlink" href="#PyCTBN.PyCTBN.utility.json_importer.JsonImporter.read_json_file" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Reads the JSON file in the path self.filePath.</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Returns</dt> |
|
||||||
<dd class="field-odd"><p>The contents of the json file</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-even">Return type</dt> |
|
||||||
<dd class="field-even"><p>List</p> |
|
||||||
</dd> |
|
||||||
</dl> |
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
</dd></dl> |
|
||||||
|
|
||||||
</section> |
|
||||||
<section id="module-PyCTBN.PyCTBN.utility.sample_importer"> |
|
||||||
<span id="pyctbn-pyctbn-utility-sample-importer-module"></span><h2>PyCTBN.PyCTBN.utility.sample_importer module<a class="headerlink" href="#module-PyCTBN.PyCTBN.utility.sample_importer" title="Permalink to this headline">¶</a></h2> |
|
||||||
<dl class="py class"> |
|
||||||
<dt id="PyCTBN.PyCTBN.utility.sample_importer.SampleImporter"> |
|
||||||
<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.PyCTBN.utility.sample_importer.</code><code class="sig-name descname">SampleImporter</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">trajectory_list</span><span class="p">:</span> <span class="n">Union<span class="p">[</span>pandas.core.frame.DataFrame<span class="p">, </span>numpy.ndarray<span class="p">, </span>List<span class="p">]</span></span> <span class="o">=</span> <span class="default_value">None</span></em>, <em class="sig-param"><span class="n">variables</span><span class="p">:</span> <span class="n">Union<span class="p">[</span>pandas.core.frame.DataFrame<span class="p">, </span>numpy.ndarray<span class="p">, </span>List<span class="p">]</span></span> <span class="o">=</span> <span class="default_value">None</span></em>, <em class="sig-param"><span class="n">prior_net_structure</span><span class="p">:</span> <span class="n">Union<span class="p">[</span>pandas.core.frame.DataFrame<span class="p">, </span>numpy.ndarray<span class="p">, </span>List<span class="p">]</span></span> <span class="o">=</span> <span class="default_value">None</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.sample_importer.SampleImporter" title="Permalink to this definition">¶</a></dt> |
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||||||
<dd><p>Bases: <a class="reference internal" href="#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter" title="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter"><code class="xref py py-class docutils literal notranslate"><span class="pre">PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter</span></code></a></p> |
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||||||
<p>Implements the abstracts methods of AbstractImporter and adds all the necessary methods to process and prepare |
|
||||||
the data loaded directly by using DataFrame</p> |
|
||||||
<dl class="field-list simple"> |
|
||||||
<dt class="field-odd">Parameters</dt> |
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||||||
<dd class="field-odd"><ul class="simple"> |
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||||||
<li><p><strong>trajectory_list</strong> (<em>typing.Union</em><em>[</em><em>pd.DataFrame</em><em>, </em><em>np.ndarray</em><em>, </em><em>typing.List</em><em>]</em>) – the data that describes the trajectories</p></li> |
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||||||
<li><p><strong>variables</strong> (<em>typing.Union</em><em>[</em><em>pd.DataFrame</em><em>, </em><em>np.ndarray</em><em>, </em><em>typing.List</em><em>]</em>) – the data that describes the variables with name and cardinality</p></li> |
|
||||||
<li><p><strong>prior_net_structure</strong> (<em>typing.Union</em><em>[</em><em>pd.DataFrame</em><em>, </em><em>np.ndarray</em><em>, </em><em>typing.List</em><em>]</em>) – the data of the real structure, if it exists</p></li> |
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||||||
</ul> |
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||||||
</dd> |
|
||||||
<dt class="field-even">_df_samples_list</dt> |
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||||||
<dd class="field-even"><p>a Dataframe list in which every dataframe contains a trajectory</p> |
|
||||||
</dd> |
|
||||||
<dt class="field-odd">_raw_data</dt> |
|
||||||
<dd class="field-odd"><p>The raw contents of the json file to import</p> |
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</dd> |
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||||||
</dl> |
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<dl class="py method"> |
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||||||
<dt id="PyCTBN.PyCTBN.utility.sample_importer.SampleImporter.build_sorter"> |
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||||||
<code class="sig-name descname">build_sorter</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">sample_frame</span><span class="p">:</span> <span class="n">pandas.core.frame.DataFrame</span></em><span class="sig-paren">)</span> → List<a class="headerlink" href="#PyCTBN.PyCTBN.utility.sample_importer.SampleImporter.build_sorter" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>Implements the abstract method build_sorter of the <code class="xref py py-class docutils literal notranslate"><span class="pre">AbstractImporter</span></code> in order to get the ordered variables list.</p> |
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||||||
</dd></dl> |
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<dl class="py method"> |
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<dt id="PyCTBN.PyCTBN.utility.sample_importer.SampleImporter.dataset_id"> |
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<code class="sig-name descname">dataset_id</code><span class="sig-paren">(</span><span class="sig-paren">)</span> → str<a class="headerlink" href="#PyCTBN.PyCTBN.utility.sample_importer.SampleImporter.dataset_id" title="Permalink to this definition">¶</a></dt> |
|
||||||
<dd><p>If the original dataset contains multiple dataset, this method returns a unique id to identify the current |
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dataset</p> |
|
||||||
</dd></dl> |
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<dl class="py method"> |
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<dt id="PyCTBN.PyCTBN.utility.sample_importer.SampleImporter.import_data"> |
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<code class="sig-name descname">import_data</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">header_column</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.sample_importer.SampleImporter.import_data" title="Permalink to this definition">¶</a></dt> |
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<dd></dd></dl> |
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</dd></dl> |
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</section> |
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<section id="module-PyCTBN.PyCTBN.utility"> |
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<span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-PyCTBN.PyCTBN.utility" title="Permalink to this headline">¶</a></h2> |
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<li class="toctree-l1"><a class="reference internal" href="PyCTBN.PyCTBN.html">PyCTBN.PyCTBN package</a><ul> |
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<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.html#subpackages">Subpackages</a></li> |
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<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.html#module-PyCTBN.PyCTBN">Module contents</a></li> |
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<li class="toctree-l2"><a class="reference internal" href="examples.html#implementing-your-own-data-importer">Implementing your own data importer</a></li> |
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<li class="toctree-l2"><a class="reference internal" href="examples.html#parameters-estimation-example">Parameters Estimation Example</a></li> |
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<li class="toctree-l2"><a class="reference internal" href="examples.html#structure-estimation-example">Structure Estimation Example</a></li> |
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<div id="content" class="hfeed entry-container hentry"> |
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<section id="pyctbn-package"> |
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<h1>PyCTBN package<a class="headerlink" href="#pyctbn-package" title="Permalink to this headline">¶</a></h1> |
|
||||||
<section id="subpackages"> |
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<h2>Subpackages<a class="headerlink" href="#subpackages" title="Permalink to this headline">¶</a></h2> |
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<div class="toctree-wrapper compound"> |
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<ul> |
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||||||
<li class="toctree-l1"><a class="reference internal" href="PyCTBN.PyCTBN.html">PyCTBN.PyCTBN package</a><ul> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.html#subpackages">Subpackages</a><ul> |
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<li class="toctree-l3"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html">PyCTBN.PyCTBN.estimators package</a><ul> |
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||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html#submodules">Submodules</a></li> |
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||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html#module-PyCTBN.PyCTBN.estimators.fam_score_calculator">PyCTBN.PyCTBN.estimators.fam_score_calculator module</a></li> |
|
||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html#module-PyCTBN.PyCTBN.estimators.parameters_estimator">PyCTBN.PyCTBN.estimators.parameters_estimator module</a></li> |
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||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html#module-PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator">PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator module</a></li> |
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||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html#module-PyCTBN.PyCTBN.estimators.structure_estimator">PyCTBN.PyCTBN.estimators.structure_estimator module</a></li> |
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||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html#module-PyCTBN.PyCTBN.estimators.structure_score_based_estimator">PyCTBN.PyCTBN.estimators.structure_score_based_estimator module</a></li> |
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||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html#module-PyCTBN.PyCTBN.estimators">Module contents</a></li> |
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</ul> |
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<li class="toctree-l3"><a class="reference internal" href="PyCTBN.PyCTBN.optimizers.html">PyCTBN.PyCTBN.optimizers package</a><ul> |
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<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.optimizers.html#submodules">Submodules</a></li> |
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<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.optimizers.html#module-PyCTBN.PyCTBN.optimizers.constraint_based_optimizer">PyCTBN.PyCTBN.optimizers.constraint_based_optimizer module</a></li> |
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||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.optimizers.html#module-PyCTBN.PyCTBN.optimizers.hill_climbing_search">PyCTBN.PyCTBN.optimizers.hill_climbing_search module</a></li> |
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||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.optimizers.html#module-PyCTBN.PyCTBN.optimizers.optimizer">PyCTBN.PyCTBN.optimizers.optimizer module</a></li> |
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||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.optimizers.html#module-PyCTBN.PyCTBN.optimizers.tabu_search">PyCTBN.PyCTBN.optimizers.tabu_search module</a></li> |
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||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.optimizers.html#module-PyCTBN.PyCTBN.optimizers">Module contents</a></li> |
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||||||
</ul> |
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||||||
</li> |
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||||||
<li class="toctree-l3"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html">PyCTBN.PyCTBN.structure_graph package</a><ul> |
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||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#submodules">Submodules</a></li> |
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||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix">PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix module</a></li> |
|
||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.network_generator">PyCTBN.PyCTBN.structure_graph.network_generator module</a></li> |
|
||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.network_graph">PyCTBN.PyCTBN.structure_graph.network_graph module</a></li> |
|
||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.sample_path">PyCTBN.PyCTBN.structure_graph.sample_path module</a></li> |
|
||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.set_of_cims">PyCTBN.PyCTBN.structure_graph.set_of_cims module</a></li> |
|
||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.structure">PyCTBN.PyCTBN.structure_graph.structure module</a></li> |
|
||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.trajectory">PyCTBN.PyCTBN.structure_graph.trajectory module</a></li> |
|
||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.trajectory_generator">PyCTBN.PyCTBN.structure_graph.trajectory_generator module</a></li> |
|
||||||
<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph">Module contents</a></li> |
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<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.abstract_importer">PyCTBN.PyCTBN.utility.abstract_importer module</a></li> |
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<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.cache">PyCTBN.PyCTBN.utility.cache module</a></li> |
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<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.json_exporter">PyCTBN.PyCTBN.utility.json_exporter module</a></li> |
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<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.json_importer">PyCTBN.PyCTBN.utility.json_importer module</a></li> |
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<li class="toctree-l1"><a class="reference internal" href="PyCTBN.tests.html">PyCTBN.tests package</a><ul> |
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<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.estimators.html#module-PyCTBN.tests.estimators.test_structure_constraint_based_estimator">PyCTBN.tests.estimators.test_structure_constraint_based_estimator module</a></li> |
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<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.estimators.html#module-PyCTBN.tests.estimators.test_structure_estimator">PyCTBN.tests.estimators.test_structure_estimator module</a></li> |
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<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.estimators.html#module-PyCTBN.tests.estimators.test_structure_score_based_estimator">PyCTBN.tests.estimators.test_structure_score_based_estimator module</a></li> |
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<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.estimators.html#module-PyCTBN.tests.estimators">Module contents</a></li> |
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<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.optimizers.html#module-PyCTBN.tests.optimizers.test_hill_climbing_search">PyCTBN.tests.optimizers.test_hill_climbing_search module</a></li> |
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<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.optimizers.html#module-PyCTBN.tests.optimizers.test_tabu_search">PyCTBN.tests.optimizers.test_tabu_search module</a></li> |
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<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_cim">PyCTBN.tests.structure_graph.test_cim module</a></li> |
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<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_networkgenerator">PyCTBN.tests.structure_graph.test_networkgenerator module</a></li> |
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<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_networkgraph">PyCTBN.tests.structure_graph.test_networkgraph module</a></li> |
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<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_structure">PyCTBN.tests.structure_graph.test_structure module</a></li> |
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<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_trajectory">PyCTBN.tests.structure_graph.test_trajectory module</a></li> |
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<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_trajectorygenerator">PyCTBN.tests.structure_graph.test_trajectorygenerator module</a></li> |
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<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph">Module contents</a></li> |
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<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.utility.html#module-PyCTBN.tests.utility.test_json_importer">PyCTBN.tests.utility.test_json_importer module</a></li> |
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<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.utility.html#module-PyCTBN.tests.utility.test_sample_importer">PyCTBN.tests.utility.test_sample_importer module</a></li> |
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<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.utility.html#module-PyCTBN.tests.utility">Module contents</a></li> |
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<h2>PyCTBN.basic_main module<a class="headerlink" href="#pyctbn-basic-main-module" title="Permalink to this headline">¶</a></h2> |
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<li class="toctree-l2"><a class="reference internal" href="examples.html#implementing-your-own-data-importer">Implementing your own data importer</a></li> |
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<li class="toctree-l2"><a class="reference internal" href="examples.html#parameters-estimation-example">Parameters Estimation Example</a></li> |
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<li class="toctree-l2"><a class="reference internal" href="examples.html#structure-estimation-example">Structure Estimation Example</a></li> |
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<section id="pyctbn-tests-package"> |
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<h1>PyCTBN.tests package<a class="headerlink" href="#pyctbn-tests-package" title="Permalink to this headline">¶</a></h1> |
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<section id="subpackages"> |
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<h2>Subpackages<a class="headerlink" href="#subpackages" title="Permalink to this headline">¶</a></h2> |
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<div class="toctree-wrapper compound"> |
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<ul> |
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<li class="toctree-l1"><a class="reference internal" href="PyCTBN.tests.estimators.html">PyCTBN.tests.estimators package</a><ul> |
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<li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.estimators.html#submodules">Submodules</a></li> |
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<li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.estimators.html#module-PyCTBN.tests.estimators.test_parameters_estimator">PyCTBN.tests.estimators.test_parameters_estimator module</a></li> |
|
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<li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.estimators.html#module-PyCTBN.tests.estimators.test_structure_constraint_based_estimator">PyCTBN.tests.estimators.test_structure_constraint_based_estimator module</a></li> |
|
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<li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.estimators.html#module-PyCTBN.tests.estimators.test_structure_estimator">PyCTBN.tests.estimators.test_structure_estimator module</a></li> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.estimators.html#module-PyCTBN.tests.estimators.test_structure_score_based_estimator">PyCTBN.tests.estimators.test_structure_score_based_estimator module</a></li> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.estimators.html#module-PyCTBN.tests.estimators">Module contents</a></li> |
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<li class="toctree-l1"><a class="reference internal" href="PyCTBN.tests.optimizers.html">PyCTBN.tests.optimizers package</a><ul> |
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<li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.optimizers.html#module-PyCTBN.tests.optimizers.test_hill_climbing_search">PyCTBN.tests.optimizers.test_hill_climbing_search module</a></li> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.optimizers.html#module-PyCTBN.tests.optimizers.test_tabu_search">PyCTBN.tests.optimizers.test_tabu_search module</a></li> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.optimizers.html#module-PyCTBN.tests.optimizers">Module contents</a></li> |
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</ul> |
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||||||
</li> |
|
||||||
<li class="toctree-l1"><a class="reference internal" href="PyCTBN.tests.structure_graph.html">PyCTBN.tests.structure_graph package</a><ul> |
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||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.structure_graph.html#submodules">Submodules</a></li> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_cim">PyCTBN.tests.structure_graph.test_cim module</a></li> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_networkgenerator">PyCTBN.tests.structure_graph.test_networkgenerator module</a></li> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_networkgraph">PyCTBN.tests.structure_graph.test_networkgraph module</a></li> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_sample_path">PyCTBN.tests.structure_graph.test_sample_path module</a></li> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_setofcims">PyCTBN.tests.structure_graph.test_setofcims module</a></li> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_structure">PyCTBN.tests.structure_graph.test_structure module</a></li> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_trajectory">PyCTBN.tests.structure_graph.test_trajectory module</a></li> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_trajectorygenerator">PyCTBN.tests.structure_graph.test_trajectorygenerator module</a></li> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph">Module contents</a></li> |
|
||||||
</ul> |
|
||||||
</li> |
|
||||||
<li class="toctree-l1"><a class="reference internal" href="PyCTBN.tests.utility.html">PyCTBN.tests.utility package</a><ul> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.utility.html#submodules">Submodules</a></li> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.utility.html#module-PyCTBN.tests.utility.test_cache">PyCTBN.tests.utility.test_cache module</a></li> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.utility.html#module-PyCTBN.tests.utility.test_json_importer">PyCTBN.tests.utility.test_json_importer module</a></li> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.utility.html#module-PyCTBN.tests.utility.test_sample_importer">PyCTBN.tests.utility.test_sample_importer module</a></li> |
|
||||||
<li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.utility.html#module-PyCTBN.tests.utility">Module contents</a></li> |
|
||||||
</ul> |
|
||||||
</li> |
|
||||||
</ul> |
|
||||||
</div> |
|
||||||
</section> |
|
||||||
<section id="module-PyCTBN.tests"> |
|
||||||
<span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-PyCTBN.tests" title="Permalink to this headline">¶</a></h2> |
|
||||||
</section> |
|
||||||
</section> |
|
||||||
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|
||||||
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|
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<p> |
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© Copyright 2021, Bregoli Alessandro, Martini Filippo, Moretti Luca. |
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</div> |
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