Add build amalgamated CIMS method

main_package/classes/amalgamated_cims.py

@@ -12,9 +12,9 @@ class AmalgamatedCims:
     def init_cims_structure(self, keys, dims):
         for key, dim in (keys, dims):
             self.actual_cims[key] = np.empty(dim, dtype=cim.ConditionalIntensityMatrix)
-        for block_matrix in self.actual_cims.values():
+        for key in self.actual_cims.keys():
-            for matrix in block_matrix:
+            for indx in range(len(self.actual_cims[key])):
-                matrix = cim.ConditionalIntensityMatrix(self.states_per_variable)
+                self.actual_cims[key][indx] = cim.ConditionalIntensityMatrix(self.states_per_variable)
 
     def compute_matrix_indx(self, row, col):
         return self.state_per_variable * row + col

main_package/classes/network_graph.py

@@ -21,7 +21,6 @@ class NetworkGraph():
     def init_graph(self):
         self.sample_path.build_trajectories()
         self.sample_path.build_structure()
-        print(self.sample_path.structure.list_of_edges())
         self.add_edges(self.sample_path.structure.list_of_edges())
 
     def add_edges(self, list_of_edges):
@@ -40,4 +39,4 @@ s1 = sp.SamplePath(path)
 
 g1 = NetworkGraph(s1)
 g1.init_graph()
-print(g1.graph)
+