Merge pull request #6 from pietroepis/trajectory-generation

Trajectory generation

.gitignore

@@ -5,5 +5,13 @@ __pycache__
 **/PyCTBN.egg-info
 **/results_data
 **/.scannerwork
+**/build
+test.py
+test_1.py
+test1.json
+test2.json
+test3.json
+result0.png
+example.json
+test_time.py
 .idea
-

PyCTBN/PyCTBN/estimators/parameters_estimator.py

@@ -36,7 +36,8 @@ class ParametersEstimator(object):
         """
         p_vals = self._net_graph._aggregated_info_about_nodes_parents[2]
         node_states_number = self._net_graph.get_states_number(node_id)
-        self._single_set_of_cims = SetOfCims(node_id, p_vals, node_states_number, self._net_graph.p_combs)
+        self._single_set_of_cims = SetOfCims(node_id = node_id, parents_states_number = p_vals, 
+            node_states_number = node_states_number, p_combs = self._net_graph.p_combs)
 
     def compute_parameters_for_node(self, node_id: str) -> SetOfCims:
         """Compute the CIMS of the node identified by the label ``node_id``.

PyCTBN/PyCTBN/structure_graph/conditional_intensity_matrix.py

@@ -14,11 +14,15 @@ class ConditionalIntensityMatrix(object):
     :type state_transition_matrix: numpy.ndArray
     :_cim: the actual cim of the node
     """
-    def __init__(self, state_residence_times: np.array, state_transition_matrix: np.array):
+    def __init__(self, state_residence_times: np.array = None, state_transition_matrix: np.array = None, 
+        cim: np.array = None):
         """Constructor Method
         """
         self._state_residence_times = state_residence_times
         self._state_transition_matrix = state_transition_matrix
+        if cim is not None:
+            self._cim = cim
+        else:
             self._cim = self.state_transition_matrix.astype(np.float64)
 
     def compute_cim_coefficients(self) -> None:

PyCTBN/PyCTBN/structure_graph/network_generator.py

@@ -0,0 +1,130 @@
+from .structure import Structure
+from .network_graph import NetworkGraph
+from .conditional_intensity_matrix import ConditionalIntensityMatrix
+from .set_of_cims import SetOfCims
+import numpy as np
+import pandas as pd
+import random
+
+class NetworkGenerator(object):
+    """Provides the methods to generate a network graph and the CIMs related to it
+    Items in _labels, _vals and _indxs are related, and therefore respect the same order
+    
+    :param _labels: List of variables labels that will be part of the network
+    :type _labels: List
+    :param _vals: List of cardinalities of the variables in network (defined in the same order as _labels)
+    :type _vals: List
+    :param _indxs: List of the nodes indexes
+    :type _indxs: List
+    :param _cims: It contains, for each variable label (the key), the SetOfCims object related to it
+    :type _cims: Dict
+    :param _graph: The NetworkGraph object representing the generated structure
+    :type _graph: NetworkGraph
+    """
+
+    def __init__(self, labels, vals):
+        self._labels = labels
+        self._vals = vals
+        self._indxs = np.array([i for i, l in enumerate(labels)])
+        self._graph = None
+        self._cims = None
+
+    def generate_graph(self, density, fixed: bool = False):
+        """Generate the edges according to specified density, and then instantiate the NetworkGraph object
+            to represent the network
+
+        :param density: Probability of an edge between two nodes to exist
+        :type density: float
+        :param fixed: Specifies whether the required density is mandatory or it's just a probability
+        :type fixed: bool
+        """
+        
+        if fixed:
+            n_edges = density * len(self._labels) * (len(self._labels) - 1)
+            if not float.is_integer(n_edges):
+                raise RuntimeError("Invalid Density")
+            else:
+                n_edges = int(n_edges)
+            edges = [(i, j) for i in self._labels for j in self._labels if i != j]
+            random.shuffle(edges)
+            edges = edges[:n_edges]
+        else:
+            edges = [(i, j) for i in self._labels for j in self._labels if np.random.binomial(1, density) == 1 and i != j]
+
+        s = Structure(self._labels, self._indxs, self._vals, edges, len(self._labels))
+        self._graph = NetworkGraph(s)
+        self._graph.add_nodes(s.nodes_labels)
+        self._graph.add_edges(s.edges)
+
+    def generate_cims(self, min_val, max_val):
+        """For each node, generate the corresponding SetOfCims. The objective is to group the CIMs 
+            (actually generated by private method __generate_cim) according to parents possibles states of every node.
+            This method must obviously be executed after the graph has been generated.
+
+        :param min_val: Minimum value allowed for the coefficients in the CIMs
+        :type min_val: float
+        :param max_val: Maximum value allowed for the coefficients in the CIMs
+        :type max_val: float
+        """
+
+        if self._graph is None:
+            return
+
+        self._cims = {}
+
+        for i, l in enumerate(self._labels):
+            p_info = self._graph.get_ordered_by_indx_set_of_parents(l)
+            combs = self._graph.build_p_comb_structure_for_a_node(p_info[2])
+
+            if len(p_info[0]) != 0:
+                node_cims = []
+                for comb in combs:
+                    cim = self.__generate_cim(min_val, max_val, self._vals[i])
+                    node_cims.append(ConditionalIntensityMatrix(cim = cim))
+            else:
+                node_cims = []
+                cim = self.__generate_cim(min_val, max_val, self._vals[i])
+                node_cims.append(ConditionalIntensityMatrix(cim = cim))
+                
+            self._cims[l] = SetOfCims(node_id = l, parents_states_number = p_info[2], node_states_number = self._vals[i], p_combs = combs, 
+                cims = np.array(node_cims))
+
+    def __generate_cim(self, min_val, max_val, shape):
+        """Generate a valid CIM matrix, with coefficients in the range [min_val, max_val] and with dimension [shape, shape]
+
+        :param min_val: Minimum value allowed for the coefficients in the CIMs
+        :type min_val: float
+        :param max_val: Maximum value allowed for the coefficients in the CIMs
+        :type max_val: float
+        :param shape: Number of elements in each dimension of the matrix (this actually is the cardinality of the node)
+        :type shape: int
+        """
+
+        cim = np.empty(shape=(shape, shape))
+        cim[:] = np.nan
+        
+        for i, c in enumerate(cim):
+            diag = (max_val - min_val) * np.random.random_sample() + min_val
+            row = np.random.rand(1, len(cim))[0]
+            row /= (sum(row) - row[i])
+            row *= diag
+            row[i] = -1 * diag
+            cim[i] = np.around(row, 4)
+
+        return cim
+
+    @property
+    def graph(self) -> NetworkGraph:
+        return self._graph
+
+    @property
+    def cims(self) -> dict:
+        return self._cims   
+
+    @property
+    def dyn_str(self) -> list:
+        return pd.DataFrame([[edge[0], edge[1]] for edge in self._graph.edges], columns = ["From", "To"])
+
+    @property
+    def variables(self) -> list:
+        return pd.DataFrame([[l, self._vals[i]] for i, l in enumerate(self._labels)], columns = ["Name", "Value"])

PyCTBN/PyCTBN/structure_graph/set_of_cims.py

@@ -26,7 +26,8 @@ class SetOfCims(object):
     :_actual_cims: the cims of the node
     """
 
-    def __init__(self, node_id: str, parents_states_number: typing.List, node_states_number: int, p_combs: np.ndarray):
+    def __init__(self, node_id: str, parents_states_number: typing.List, node_states_number: int, p_combs: np.ndarray,
+        cims: np.ndarray = None):
         """Constructor Method
         """
         self._node_id = node_id
@@ -36,6 +37,10 @@ class SetOfCims(object):
         self._state_residence_times = None
         self._transition_matrices = None
         self._p_combs = p_combs
+
+        if cims is not None:
+            self._actual_cims = cims
+        else:
             self.build_times_and_transitions_structures()
 
     def build_times_and_transitions_structures(self) -> None:
@@ -60,7 +65,7 @@ class SetOfCims(object):
         :type transition_matrices: numpy.ndArray
         """
         for state_res_time_vector, transition_matrix in zip(state_res_times, transition_matrices):
-            cim_to_add = ConditionalIntensityMatrix(state_res_time_vector, transition_matrix)
+            cim_to_add = ConditionalIntensityMatrix(state_residence_times = state_res_time_vector, state_transition_matrix = transition_matrix)
             cim_to_add.compute_cim_coefficients()
             self._actual_cims.append(cim_to_add)
         self._actual_cims = np.array(self._actual_cims)
@@ -82,7 +87,7 @@ class SetOfCims(object):
             return self._actual_cims
         else:
             flat_indxs = np.argwhere(np.all(self._p_combs[:, mask_arr] == comb, axis=1)).ravel()
-            return self._actual_cims[flat_indxs]
+            return np.array(self._actual_cims)[flat_indxs.astype(int)]
 
     @property
     def actual_cims(self) -> np.ndarray:

PyCTBN/PyCTBN/structure_graph/trajectory_generator.py

@@ -0,0 +1,179 @@
+from ..utility.abstract_importer import AbstractImporter
+from .conditional_intensity_matrix import ConditionalIntensityMatrix
+from .set_of_cims import SetOfCims
+from .trajectory import Trajectory
+import numpy as np
+import pandas as pd
+import re
+import json
+from numpy import random
+from multiprocessing import Process, Manager
+
+class TrajectoryGenerator(object):
+    """Provides the methods to generate a trajectory basing on the network defined
+    in the importer.
+    
+    :param _importer: the Importer object which contains the imported and processed data
+    :type _importer: AbstractImporter
+    :param _vnames: List of the variables labels that belong to the network
+    :type _vnames: List
+    :param _parents: It contains, for each variable label (the key), the list of related parents labels
+    :type _parents: Dict
+    :param _cims: It contains, for each variable label (the key), the SetOfCims object related to it
+    :type _cims: Dict
+    :param _generated_trajectory: Result of the execution of CTBN_Sample, contains the output trajectory
+    :type _generated_trajectory: pandas.DataFrame
+    """
+
+    def __init__(self, importer: AbstractImporter = None, variables: pd.DataFrame = None, dyn_str: pd.DataFrame = None, dyn_cims: dict = None):
+        """Constructor Method
+            It parses and elaborates the data fetched from importer (if defined, otherwise variables, dyn_str and dyn_cims are used) 
+            in order to make the objects structure more suitable for the forthcoming trajectory generation
+        """
+        
+        self._importer = importer
+
+        self._vnames = self._importer._df_variables.iloc[:, 0].to_list() if importer is not None else variables.iloc[:, 0].to_list()
+ 
+        self._parents = {}
+        for v in self._vnames:
+            if importer is not None:
+                self._parents[v] = self._importer._df_structure.where(self._importer._df_structure["To"] == v).dropna()["From"].tolist()
+            else:
+                self._parents[v] = dyn_str.where(dyn_str["To"] == v).dropna()["From"].tolist()
+        
+        self._cims = {}
+        if importer is not None:
+            sampled_cims = self._importer._cims
+        
+            for v in sampled_cims.keys():
+                p_combs = []
+                v_cims = []
+                for comb in sampled_cims[v].keys():
+                    p_combs.append(np.array(re.findall(r"=(\d)", comb)).astype("int"))
+                    cim = pd.DataFrame(sampled_cims[v][comb]).to_numpy()    
+                    v_cims.append(ConditionalIntensityMatrix(cim = cim))
+
+                if importer is not None:
+                    sof = SetOfCims(node_id = v, parents_states_number = [self._importer._df_variables.where(self._importer._df_variables["Name"] == p)["Value"] for p in self._parents[v]], 
+                        node_states_number = self._importer._df_variables.where(self._importer._df_variables["Name"] == v)["Value"], p_combs = np.array(p_combs), cims = v_cims)
+                else:
+                    sof = SetOfCims(node_id = v, parents_states_number = [variables.where(variables["Name"] == p)["Value"] for p in self._parents[v]], 
+                        node_states_number = variables.where(variables["Name"] == v)["Value"], p_combs = np.array(p_combs), cims = v_cims)
+                self._cims[v] = sof
+        else:
+            self._cims = dyn_cims
+
+    def CTBN_Sample(self, t_end = -1, max_tr = -1):
+        """This method implements the generation of a trajectory, basing on the network structure and
+            on the coefficients defined in the CIMs.
+            The variables are initialized with value 0, and the method takes care of adding the
+            conventional last row made up of -1.
+
+        :param t_end: If defined, the sampling ends when end time is reached
+        :type t_end: float
+        :param max_tr: Parameter taken in consideration in case that t_end isn't defined. It specifies the number of transitions to execute
+        :type max_tr: int
+        """
+
+        t = 0
+        sigma = pd.DataFrame(columns = (["Time"] + self._vnames))
+        sigma.loc[len(sigma)] = [0] + [0 for v in self._vnames]
+        time = np.full(len(self._vnames), np.NaN)
+        n_tr = 0
+        self._generated_trajectory = None
+
+        while True:
+            current_values = sigma.loc[len(sigma) - 1]
+            
+            for i in range(0, time.size):
+                if np.isnan(time[i]):
+                    n_parents = len(self._parents[self._vnames[i]])
+                    cim_obj = self._cims[self._vnames[i]].filter_cims_with_mask(np.array([True for p in self._parents[self._vnames[i]]]), 
+                        [current_values.at[p] for p in self._parents[self._vnames[i]]])
+
+                    if n_parents == 1:
+                        cim = cim_obj[current_values.at[self._parents[self._vnames[i]][0]]].cim
+                    else:
+                        cim = cim_obj[0].cim
+
+                    param = -1 * cim[current_values.at[self._vnames[i]]][current_values.at[self._vnames[i]]]
+
+                    time[i] = t + random.exponential(scale = param)
+        
+            next = time.argmin()
+            t = time[next]
+
+            if (max_tr != -1 and n_tr == max_tr) or (t_end != -1 and t >= t_end):
+                sigma.loc[len(sigma) - 1, self._vnames] = -1
+                self._generated_trajectory = sigma
+                return sigma
+            else:
+                n_parents = len(self._parents[self._vnames[next]])
+                cim_obj = self._cims[self._vnames[next]].filter_cims_with_mask(np.array([True for p in self._parents[self._vnames[next]]]), 
+                    [current_values.at[p] for p in self._parents[self._vnames[next]]])
+
+                if n_parents == 1:
+                    cim = cim_obj[current_values.at[self._parents[self._vnames[next]][0]]].cim
+                else:
+                    cim = cim_obj[0].cim
+                    
+                cim_row = np.array(cim[current_values.at[self._vnames[next]]])
+                cim_row[current_values.at[self._vnames[next]]] = 0
+                cim_row /= sum(cim_row)
+                rand_mult = np.random.multinomial(1, cim_row, size=1)
+
+                new_row = pd.DataFrame(sigma[-1:].values, columns = sigma.columns)
+                new_row.loc[0].at[self._vnames[next]] = np.where(rand_mult[0] == 1)[0][0]
+                new_row.loc[0].at["Time"] = round(t, 4)
+                sigma = sigma.append(new_row, ignore_index = True)
+
+                n_tr += 1
+
+                # undefine variable time
+                time[next] = np.NaN
+                for i, v in enumerate(self._parents):
+                    if self._vnames[next] in self._parents[v]:
+                        time[i] = np.NaN
+
+    def worker(self, t_end, max_tr, trajectories):
+        """Single process that will be executed in parallel in order to generate one trajectory. 
+
+            :param t_end: If defined, the sampling ends when end time is reached
+            :type t_end: float
+            :param max_tr: Parameter taken in consideration in case that t_end isn't defined. It specifies the number of transitions to execute
+            :type max_tr: int
+            :param trajectories: Shared list that contains to which the generated trajectory is added
+            :type trajectories: list
+        """
+        
+        trajectory = self.CTBN_Sample(t_end = t_end, max_tr = max_tr)
+        trajectories.append(trajectory)
+
+    def multi_trajectory(self, t_ends: list = None, max_trs: list = None):
+        """Generate n trajectories in parallel, where n is the number of items in 
+            t_ends, if defined, or the number of items in max_trs otherwise
+
+            :param t_ends: List of t_end values for the trajectories that will be generated
+            :type t_ends: list
+            :param max_trs: List of max_tr values for the trajectories that will be generated
+            :type max_trs: list
+        """
+
+        if t_ends is None and max_trs is None:
+            return
+
+        trajectories = Manager().list()
+
+        if t_ends is not None:
+            processes = [Process(target = self.worker, args = (t, -1, trajectories)) for t in t_ends]
+        else:   
+            processes = [Process(target = self.worker, args = (-1, m, trajectories)) for m in max_trs]
+
+        for p in processes:
+            p.start()
+
+        for p in processes:
+            p.join()
+
+        return trajectories

PyCTBN/PyCTBN/utility/abstract_exporter.py

@@ -0,0 +1,42 @@
+import json
+import pandas as pd
+import os
+from abc import ABC, abstractmethod
+
+class AbstractExporter(ABC):
+    """Abstract class that exposes the methods to save in json format a network information
+    along with one or more trajectories generated basing on it
+    
+    :param _variables: Dataframe containing the nodes labels and cardinalities
+    :type _variables: pandas.DataFrame
+    :param _dyn_str: Dataframe containing the structure of the network (edges)
+    :type _dyn_str: pandas.DataFrame
+    :param _dyn_cims: It contains, for every variable (label is the key), the SetOfCims object related to it
+    :type _dyn_cims: dict
+    :param _trajectories: List of trajectories, that can be added subsequently
+    :type _trajectories: List
+    """
+
+    def __init__(self, variables: pd.DataFrame = None, dyn_str: pd.DataFrame = None, dyn_cims: dict = None):
+        self._variables = variables
+        self._dyn_str = dyn_str
+        self._dyn_cims = dyn_cims
+        self._trajectories = []
+
+    def add_trajectory(self, trajectory: list):
+        """Add a new trajectory to the current list
+
+        :param trajectory: The trajectory to add
+        :type trajectory: pandas.DataFrame
+        """
+
+        self._trajectories.append(trajectory)
+
+    @abstractmethod
+    def out_file(self, filename):
+        """Create a file in current directory and write on it the previously added data 
+            (variables, dyn_str, dyn_cims and trajectories)
+
+        :param filename: Name of the output file (it must include json extension)
+        :type filename: string
+        """

PyCTBN/PyCTBN/utility/json_exporter.py

@@ -0,0 +1,75 @@
+import json
+import pandas as pd
+import numpy as np
+import os
+
+from .abstract_exporter import AbstractExporter
+
+class JsonExporter(AbstractExporter):
+    """Provides the methods to save in json format a network information
+    along with one or more trajectories generated basing on it
+    
+    :param _variables: Dataframe containing the nodes labels and cardinalities
+    :type _variables: pandas.DataFrame
+    :param _dyn_str: Dataframe containing the structure of the network (edges)
+    :type _dyn_str: pandas.DataFrame
+    :param _dyn_cims: It contains, for every variable (label is the key), the SetOfCims object related to it
+    :type _dyn_cims: dict
+    :param _trajectories: List of trajectories, that can be added subsequently
+    :type _trajectories: List
+    """
+
+    def __init__(self, variables: pd.DataFrame = None, dyn_str: pd.DataFrame = None, dyn_cims: dict = None):
+        self._variables = variables
+        self._dyn_str = dyn_str
+        self._dyn_cims = dyn_cims
+        self._trajectories = []
+
+    def out_file(self, filename):
+        """Create a file in current directory and write on it the previously added data 
+            (variables, dyn_str, dyn_cims and trajectories)
+
+        :param filename: Name of the output file (it must include json extension)
+        :type filename: string
+        """
+
+        data = [{
+            "dyn.str": json.loads(self._dyn_str.to_json(orient="records")),
+            "variables": json.loads(self._variables.to_json(orient="records")),
+            "dyn.cims": self.cims_to_json(),
+            "samples": [json.loads(trajectory.to_json(orient="records")) for trajectory in self._trajectories]
+        }]
+
+        path = os.getcwd()
+        with open(path + "/" + filename, "w") as json_file:
+            json.dump(data, json_file)
+
+    """Restructure the CIMs object in order to fit the standard JSON file structure 
+    """
+    def cims_to_json(self) -> dict:
+        json_cims = {}
+
+        for i, l in enumerate(self._variables.iloc[:, 0].to_list()):
+            json_cims[l] = {}
+            parents = self._dyn_str.where(self._dyn_str["To"] == l).dropna()["From"].tolist()
+            for j, comb in enumerate(self._dyn_cims[l].p_combs):
+                comb_key = ""
+                if len(parents) != 0:
+                    for k, val in enumerate(comb):
+                        comb_key += parents[k] + "=" + str(val)
+                        if k < len(comb) - 1:
+                            comb_key += ","
+                else:
+                    comb_key = l
+
+                cim = self._dyn_cims[l].filter_cims_with_mask(np.array([True for p in parents]), comb)
+                if len(parents) == 1:
+                    cim = cim[comb[0]].cim
+                elif len(parents) == 0:
+                    cim = cim[0].cim
+                else:
+                    cim = cim[0].cim
+                
+                json_cims[l][comb_key] = [dict([(str(i), val) for i, val in enumerate(row)]) for row in cim]
+
+        return json_cims

PyCTBN/PyCTBN/utility/json_importer.py

@@ -34,7 +34,7 @@ class JsonImporter(AbstractImporter):
     """
 
     def __init__(self, file_path: str, samples_label: str, structure_label: str, variables_label: str, time_key: str, 
-                 variables_key: str):
+                    variables_key: str, cims_label: str = None):
         """Constructor method
 
         .. note::
@@ -45,6 +45,7 @@ class JsonImporter(AbstractImporter):
         self._samples_label = samples_label
         self._structure_label = structure_label
         self._variables_label = variables_label
+        self._cims_label = cims_label
         self._time_key = time_key
         self._variables_key = variables_key
         self._df_samples_list = None
@@ -66,6 +67,9 @@ class JsonImporter(AbstractImporter):
         self._df_structure = self.import_structure(self._raw_data)
         self._df_variables = self.import_variables(self._raw_data)
 
+        if self._cims_label != None:
+            self._cims = self._raw_data[indx][self._cims_label]
+
     def import_trajectories(self, raw_data: typing.List) -> typing.List:
         """Imports the trajectories from the list of dicts ``raw_data``.
 

PyCTBN/tests/structure_graph/test_cim.py

@@ -20,14 +20,16 @@ class TestConditionalIntensityMatrix(unittest.TestCase):
             cls.state_transition_matrix[i, i] = np.sum(cls.state_transition_matrix[i])
 
     def test_init(self):
-        c1 = ConditionalIntensityMatrix(self.state_res_times, self.state_transition_matrix)
+        c1 = ConditionalIntensityMatrix(state_residence_times = self.state_res_times, 
+            state_transition_matrix = self.state_transition_matrix)
         self.assertTrue(np.array_equal(self.state_res_times, c1.state_residence_times))
         self.assertTrue(np.array_equal(self.state_transition_matrix, c1.state_transition_matrix))
         self.assertEqual(c1.cim.dtype, np.float)
         self.assertEqual(self.state_transition_matrix.shape, c1.cim.shape)
 
     def test_compute_cim_coefficients(self):
-        c1 = ConditionalIntensityMatrix(self.state_res_times, self.state_transition_matrix)
+        c1 = ConditionalIntensityMatrix(state_residence_times = self.state_res_times, 
+            state_transition_matrix = self.state_transition_matrix)
         c2 = self.state_transition_matrix.astype(np.float)
         np.fill_diagonal(c2, c2.diagonal() * -1)
         for i in range(0, len(self.state_res_times)):
@@ -41,7 +43,8 @@ class TestConditionalIntensityMatrix(unittest.TestCase):
                 self.assertTrue(np.isclose(c1.cim[i, j], c2[i, j], 1e01))
 
     def test_repr(self):
-        c1 = ConditionalIntensityMatrix(self.state_res_times, self.state_transition_matrix)
+        c1 = ConditionalIntensityMatrix(state_residence_times = self.state_res_times, 
+            state_transition_matrix = self.state_transition_matrix)
         print(c1)
 
 

PyCTBN/tests/structure_graph/test_networkgenerator.py

@@ -0,0 +1,39 @@
+import unittest
+import random
+import numpy as np
+
+from PyCTBN.PyCTBN.structure_graph.network_generator import NetworkGenerator
+
+class TestNetworkGenerator(unittest.TestCase):
+    def test_generate_graph(self):
+        labels = ["U", "V", "W", "X", "Y", "Z"]
+        card = 3
+        vals = [card for l in labels]
+        ng = NetworkGenerator(labels, vals)
+        ng.generate_graph(0.3)
+        self.assertEqual(len(labels), len(ng.graph.nodes))
+        self.assertEqual(len([edge for edge in ng.graph.edges if edge[0] == edge[1]]), 0)
+
+    def test_generate_cims(self):
+        labels = ["U", "V", "W", "X", "Y", "Z"]
+        card = 3
+        vals = [card for l in labels]
+        cim_min = random.uniform(0.5, 5)
+        cim_max = random.uniform(0.5, 5) + cim_min
+        ng = NetworkGenerator(labels, vals)
+        ng.generate_graph(0.3)
+        ng.generate_cims(cim_min, cim_max)
+        self.assertEqual(len(ng.cims), len(labels))      
+        self.assertListEqual(list(ng.cims.keys()), labels)
+        for key in ng.cims:
+            p_card = ng.graph.get_ordered_by_indx_set_of_parents(key)[2]
+            comb = ng.graph.build_p_comb_structure_for_a_node(p_card)
+            self.assertEqual(len(ng.cims[key].actual_cims), len(comb))
+            for cim in ng.cims[key].actual_cims:
+                self.assertEqual(sum(c > 0 for c in cim.cim.diagonal()), 0)
+                for i, row in enumerate(cim.cim):
+                    # self.assertEqual(round(sum(row) - row[i], 8), round(-1 * row[i], 8))
+                    self.assertEqual(sum(c < 0 for c in np.delete(cim.cim[i], i)), 0)
+    
+if __name__ == '__main__':
+    unittest.main()

PyCTBN/tests/structure_graph/test_setofcims.py

@@ -52,7 +52,8 @@ class TestSetOfCims(unittest.TestCase):
 
     def test_filter_cims_with_mask(self):
         p_combs = self.build_p_comb_structure_for_a_node(self.possible_cardinalities)
-        sofc1 = SetOfCims('X', self.possible_cardinalities, 3, p_combs)
+        sofc1 = SetOfCims(node_id = 'X', parents_states_number = self.possible_cardinalities, node_states_number = 3, 
+            p_combs = p_combs)
         state_res_times_list = []
         transition_matrices_list = []
         for i in range(len(p_combs)):
@@ -76,7 +77,8 @@ class TestSetOfCims(unittest.TestCase):
     def aux_test_build_cims(self, node_id, p_values, node_states, p_combs):
         state_res_times_list = []
         transition_matrices_list = []
-        so1 = SetOfCims(node_id, p_values, node_states, p_combs)
+        so1 = SetOfCims(node_id = node_id, parents_states_number = p_values, node_states_number = node_states, 
+            p_combs = p_combs)
         for i in range(len(p_combs)):
             state_res_times = np.random.rand(1, node_states)[0]
             state_res_times = state_res_times * 1000
@@ -90,7 +92,8 @@ class TestSetOfCims(unittest.TestCase):
         self.assertIsNone(so1._state_residence_times)
 
     def aux_test_init(self, node_id, parents_states_number, node_states_number, p_combs):
-        sofcims = SetOfCims(node_id, parents_states_number, node_states_number, p_combs)
+        sofcims = SetOfCims(node_id = node_id, parents_states_number = parents_states_number, 
+            node_states_number = node_states_number, p_combs = p_combs)
         self.assertEqual(sofcims._node_id, node_id)
         self.assertTrue(np.array_equal(sofcims._p_combs, p_combs))
         self.assertTrue(np.array_equal(sofcims._parents_states_number, parents_states_number))

PyCTBN/tests/structure_graph/test_trajectorygenerator.py

@@ -0,0 +1,58 @@
+import unittest
+import random
+
+from PyCTBN.PyCTBN.structure_graph.trajectory import Trajectory
+from PyCTBN.PyCTBN.structure_graph.trajectory_generator import TrajectoryGenerator
+from PyCTBN.PyCTBN.utility.json_importer import JsonImporter
+
+class TestTrajectoryGenerator(unittest.TestCase):
+    @classmethod
+    def setUpClass(cls) -> None:
+        cls.j1 = JsonImporter(file_path = "./PyCTBN/test_data/networks_and_trajectories_binary_data_01_3.json", samples_label = "samples",
+                            structure_label = "dyn.str", variables_label = "variables",
+                            cims_label = "dyn.cims", time_key = "Time", 
+                            variables_key = "Name")
+        cls.j1.import_data(0)
+
+    def test_init(self):
+        tg = TrajectoryGenerator(self.j1)
+        self.assertEqual(len(tg._vnames), len(self.j1.variables))
+        self.assertIsInstance(tg._vnames, list)
+        self.assertIsInstance(tg._parents, dict)
+        self.assertIsInstance(tg._cims, dict)
+        self.assertListEqual(list(tg._parents.keys()), tg._vnames)
+        self.assertListEqual(list(tg._cims.keys()), tg._vnames)
+
+    def test_generated_trajectory(self):
+        tg = TrajectoryGenerator(self.j1)
+        end_time = random.randint(5, 100)
+        sigma = tg.CTBN_Sample(end_time)
+        traj = Trajectory(self.j1.build_list_of_samples_array(sigma), len(self.j1.sorter) + 1)
+        self.assertLessEqual(traj.times[len(traj.times) - 1], end_time)
+        for index in range(len(traj.times)):
+            if index > 0:
+                self.assertLess(traj.times[index - 1], traj.times[index])
+                if index < len(traj.times) - 1:
+                    diff = abs(sum(traj.trajectory[index - 1]) - sum(traj.trajectory[index]))
+                    self.assertEqual(diff, 1)
+        self.assertEqual(sum(traj.trajectory[len(traj.times) - 1]), -1 * len(self.j1.sorter))
+
+    def test_generated_trajectory_max_tr(self):
+        tg = TrajectoryGenerator(self.j1)
+        n_tr = random.randint(5, 100)
+        sigma = tg.CTBN_Sample(max_tr = n_tr)
+        traj = Trajectory(self.j1.build_list_of_samples_array(sigma), len(self.j1.sorter) + 1)
+        self.assertEqual(len(traj.times), n_tr + 1)
+
+    def test_multi_trajectory(self):
+        tg = TrajectoryGenerator(self.j1)
+        max_trs = [random.randint(5, 100) for i in range(10)]
+        trajectories = tg.multi_trajectory(max_trs = max_trs)
+        self.assertEqual(len(trajectories), len(max_trs))
+        self.assertTrue({len(trajectory) for trajectory in trajectories} == {max_tr + 1 for max_tr in max_trs})
+        t_ends = [random.randint(100, 500) for i in range(10)]
+        trajectories = tg.multi_trajectory(t_ends = t_ends)
+        self.assertEqual(len(trajectories), len(t_ends))
+
+if __name__ == '__main__':
+    unittest.main()

PyCTBN/tests/utility/test_cache.py

@@ -19,13 +19,13 @@ class TestCache(unittest.TestCase):
     def test_put(self):
         c1 = Cache()
         pset1 = {'X', 'Y'}
-        sofc1 = SetOfCims('Z', [], 3, np.array([]))
+        sofc1 = SetOfCims(node_id = 'Z', parents_states_number = [], node_states_number = 3, p_combs = np.array([]))
         c1.put(pset1, sofc1)
         self.assertEqual(1, len(c1._actual_cache))
         self.assertEqual(1, len(c1._list_of_sets_of_parents))
         self.assertEqual(sofc1, c1._actual_cache[0])
         pset2 = {'X'}
-        sofc2 = SetOfCims('Z', [], 3, np.array([]))
+        sofc2 = SetOfCims(node_id = 'Z', parents_states_number = [], node_states_number = 3, p_combs = np.array([]))
         c1.put(pset2, sofc2)
         self.assertEqual(2, len(c1._actual_cache))
         self.assertEqual(2, len(c1._list_of_sets_of_parents))
@@ -34,7 +34,7 @@ class TestCache(unittest.TestCase):
     def test_find(self):
         c1 = Cache()
         pset1 = {'X', 'Y'}
-        sofc1 = SetOfCims('Z', [], 3, np.array([]))
+        sofc1 = SetOfCims(node_id = 'Z', parents_states_number = [], node_states_number = 3, p_combs = np.array([]))
         c1.put(pset1, sofc1)
         self.assertEqual(1, len(c1._actual_cache))
         self.assertEqual(1, len(c1._list_of_sets_of_parents))

PyCTBN/tests/utility/test_json_exporter.py

@@ -0,0 +1,28 @@
+import unittest
+import random
+import numpy as np
+import os.path
+
+from PyCTBN.PyCTBN.utility.json_exporter import JsonExporter
+from PyCTBN.PyCTBN.structure_graph.trajectory_generator import TrajectoryGenerator
+from PyCTBN.PyCTBN.structure_graph.network_generator import NetworkGenerator
+
+class TestJSONExporter(unittest.TestCase):
+    def test_generate_graph(self):
+        ng = NetworkGenerator(["X", "Y", "Z"], [3 for i in range(3)])
+        ng.generate_graph(0.3)
+        ng.generate_cims(1, 3)
+        e1 = JsonExporter(ng.variables, ng.dyn_str, ng.cims)
+        tg = TrajectoryGenerator(variables = ng.variables, dyn_str = ng.dyn_str, dyn_cims = ng.cims)
+        n_traj = random.randint(1, 30)
+        for i in range(n_traj):
+            sigma = tg.CTBN_Sample(max_tr = 100)
+            e1.add_trajectory(sigma)
+
+        self.assertEqual(n_traj, len(e1._trajectories))
+        e1.out_file("test.json")
+        
+        self.assertTrue(os.path.isfile("test.json"))
+
+if __name__ == '__main__':
+    unittest.main()

docs-out/PyCTBN.PyCTBN.structure_graph.rst

@@ -12,6 +12,14 @@ PyCTBN.PyCTBN.structure\_graph.conditional\_intensity\_matrix module
    :undoc-members:
    :show-inheritance:
 
+PyCTBN.PyCTBN.structure\_graph.network\_generator module
+--------------------------------------------------------
+
+.. automodule:: PyCTBN.PyCTBN.structure_graph.network_generator
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
 PyCTBN.PyCTBN.structure\_graph.network\_graph module
 ----------------------------------------------------
 
@@ -52,6 +60,14 @@ PyCTBN.PyCTBN.structure\_graph.trajectory module
    :undoc-members:
    :show-inheritance:
 
+PyCTBN.PyCTBN.structure\_graph.trajectory\_generator module
+-----------------------------------------------------------
+
+.. automodule:: PyCTBN.PyCTBN.structure_graph.trajectory_generator
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
 Module contents
 ---------------
 

docs-out/PyCTBN.PyCTBN.utility.rst

@@ -4,6 +4,14 @@ PyCTBN.PyCTBN.utility package
 Submodules
 ----------
 
+PyCTBN.PyCTBN.utility.abstract\_exporter module
+-----------------------------------------------
+
+.. automodule:: PyCTBN.PyCTBN.utility.abstract_exporter
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
 PyCTBN.PyCTBN.utility.abstract\_importer module
 -----------------------------------------------
 
@@ -20,6 +28,14 @@ PyCTBN.PyCTBN.utility.cache module
    :undoc-members:
    :show-inheritance:
 
+PyCTBN.PyCTBN.utility.json\_exporter module
+-------------------------------------------
+
+.. automodule:: PyCTBN.PyCTBN.utility.json_exporter
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
 PyCTBN.PyCTBN.utility.json\_importer module
 -------------------------------------------
 

docs-out/PyCTBN.rst

@@ -8,10 +8,27 @@ Subpackages
    :maxdepth: 4
 
    PyCTBN.PyCTBN
+   PyCTBN.tests
 
 Submodules
 ----------
 
+PyCTBN.basic\_main module
+-------------------------
+
+.. automodule:: PyCTBN.basic_main
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+PyCTBN.setup module
+-------------------
+
+.. automodule:: PyCTBN.setup
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
 Module contents
 ---------------
 

docs-out/PyCTBN.tests.structure_graph.rst

@@ -12,6 +12,14 @@ PyCTBN.tests.structure\_graph.test\_cim module
    :undoc-members:
    :show-inheritance:
 
+PyCTBN.tests.structure\_graph.test\_networkgenerator module
+-----------------------------------------------------------
+
+.. automodule:: PyCTBN.tests.structure_graph.test_networkgenerator
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
 PyCTBN.tests.structure\_graph.test\_networkgraph module
 -------------------------------------------------------
 
@@ -52,6 +60,14 @@ PyCTBN.tests.structure\_graph.test\_trajectory module
    :undoc-members:
    :show-inheritance:
 
+PyCTBN.tests.structure\_graph.test\_trajectorygenerator module
+--------------------------------------------------------------
+
+.. automodule:: PyCTBN.tests.structure_graph.test_trajectorygenerator
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
 Module contents
 ---------------
 

docs-out/example.rst

@@ -0,0 +1,7 @@
+example module
+==============
+
+.. automodule:: example
+   :members:
+   :undoc-members:
+   :show-inheritance:

docs-out/modules.rst

@@ -4,5 +4,6 @@ PyCTBN
 .. toctree::
    :maxdepth: 4
 
-   PyCTBN.PyCTBN
+   PyCTBN
-   examples
+   example
+   setup

docs/.buildinfo

@@ -0,0 +1,4 @@
+# Sphinx build info version 1
+# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
+config: 87e83150455399004cf3d149c3abeafb
+tags: 645f666f9bcd5a90fca523b33c5a78b7

docs/PyCTBN.PyCTBN.estimators.html

@@ -19,6 +19,10 @@
     <link rel="stylesheet" href="_static/css/pdj.css" type="text/css" />
 
   
+    <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
+  
+    <link rel="stylesheet" href="_static/css/pdj.css" type="text/css" />
+  
 
   
 
@@ -123,13 +127,13 @@
 <section id="module-PyCTBN.PyCTBN.estimators.fam_score_calculator">
 <span id="pyctbn-pyctbn-estimators-fam-score-calculator-module"></span><h2>PyCTBN.PyCTBN.estimators.fam_score_calculator module<a class="headerlink" href="#module-PyCTBN.PyCTBN.estimators.fam_score_calculator" title="Permalink to this headline">¶</a></h2>
 <dl class="py class">
-<dt id="PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator">
-<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.PyCTBN.estimators.fam_score_calculator.</code><code class="sig-name descname">FamScoreCalculator</code><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span> </em><span class="sig-prename descclassname"><span class="pre">PyCTBN.PyCTBN.estimators.fam_score_calculator.</span></span><span class="sig-name descname"><span class="pre">FamScoreCalculator</span></span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></p>
 <p>Has the task of calculating the FamScore of a node by using a Bayesian score function</p>
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.get_fam_score">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.get_fam_score">
-<code class="sig-name descname">get_fam_score</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">cims</span><span class="p">:</span> <span class="n">numpy.array</span></em>, <em class="sig-param"><span class="n">tau_xu</span><span class="p">:</span> <span class="n">float</span> <span class="o">=</span> <span class="default_value">0.1</span></em>, <em class="sig-param"><span class="n">alpha_xu</span><span class="p">:</span> <span class="n">float</span> <span class="o">=</span> <span class="default_value">1</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.get_fam_score" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">get_fam_score</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">cims</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">numpy.array</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">tau_xu</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">float</span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">0.1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">alpha_xu</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">float</span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">1</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.get_fam_score" title="Permalink to this definition">¶</a></dt>
 <dd><p>Calculate the FamScore value of the node</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
@@ -149,8 +153,8 @@
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.marginal_likelihood_q">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.marginal_likelihood_q">
-<code class="sig-name descname">marginal_likelihood_q</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">cims</span><span class="p">:</span> <span class="n">numpy.array</span></em>, <em class="sig-param"><span class="n">tau_xu</span><span class="p">:</span> <span class="n">float</span> <span class="o">=</span> <span class="default_value">0.1</span></em>, <em class="sig-param"><span class="n">alpha_xu</span><span class="p">:</span> <span class="n">float</span> <span class="o">=</span> <span class="default_value">1</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.marginal_likelihood_q" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">marginal_likelihood_q</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">cims</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">numpy.array</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">tau_xu</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">float</span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">0.1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">alpha_xu</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">float</span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">1</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.marginal_likelihood_q" title="Permalink to this definition">¶</a></dt>
 <dd><p>Calculate the value of the marginal likelihood over q of the node identified by the label node_id</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
@@ -170,8 +174,8 @@
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.marginal_likelihood_theta">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.marginal_likelihood_theta">
-<code class="sig-name descname">marginal_likelihood_theta</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">cims</span><span class="p">:</span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix" title="PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix">PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix</a></span></em>, <em class="sig-param"><span class="n">alpha_xu</span><span class="p">:</span> <span class="n">float</span></em>, <em class="sig-param"><span class="n">alpha_xxu</span><span class="p">:</span> <span class="n">float</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.marginal_likelihood_theta" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">marginal_likelihood_theta</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">cims</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix" title="PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix"><span class="pre">PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix</span></a></span></em>, <em class="sig-param"><span class="n"><span class="pre">alpha_xu</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">float</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">alpha_xxu</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">float</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.marginal_likelihood_theta" title="Permalink to this definition">¶</a></dt>
 <dd><p>Calculate the FamScore value of the node identified by the label node_id</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
@@ -191,8 +195,8 @@
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.single_cim_xu_marginal_likelihood_q">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.single_cim_xu_marginal_likelihood_q">
-<code class="sig-name descname">single_cim_xu_marginal_likelihood_q</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">M_xu_suff_stats</span><span class="p">:</span> <span class="n">float</span></em>, <em class="sig-param"><span class="n">T_xu_suff_stats</span><span class="p">:</span> <span class="n">float</span></em>, <em class="sig-param"><span class="n">tau_xu</span><span class="p">:</span> <span class="n">float</span> <span class="o">=</span> <span class="default_value">0.1</span></em>, <em class="sig-param"><span class="n">alpha_xu</span><span class="p">:</span> <span class="n">float</span> <span class="o">=</span> <span class="default_value">1</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.single_cim_xu_marginal_likelihood_q" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">single_cim_xu_marginal_likelihood_q</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">M_xu_suff_stats</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">float</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">T_xu_suff_stats</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">float</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">tau_xu</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">float</span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">0.1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">alpha_xu</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">float</span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">1</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.single_cim_xu_marginal_likelihood_q" title="Permalink to this definition">¶</a></dt>
 <dd><p>Calculate the marginal likelihood on q of the node when assumes a specif value
 and a specif parents’s assignment</p>
 <dl class="field-list simple">
@@ -215,8 +219,8 @@ and a specif parents’s assignment</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.single_cim_xu_marginal_likelihood_theta">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.single_cim_xu_marginal_likelihood_theta">
-<code class="sig-name descname">single_cim_xu_marginal_likelihood_theta</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">index</span><span class="p">:</span> <span class="n">int</span></em>, <em class="sig-param"><span class="n">cim</span><span class="p">:</span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix" title="PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix">PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix</a></span></em>, <em class="sig-param"><span class="n">alpha_xu</span><span class="p">:</span> <span class="n">float</span></em>, <em class="sig-param"><span class="n">alpha_xxu</span><span class="p">:</span> <span class="n">float</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.single_cim_xu_marginal_likelihood_theta" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">single_cim_xu_marginal_likelihood_theta</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">index</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">int</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cim</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix" title="PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix"><span class="pre">PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix</span></a></span></em>, <em class="sig-param"><span class="n"><span class="pre">alpha_xu</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">float</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">alpha_xxu</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">float</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.single_cim_xu_marginal_likelihood_theta" title="Permalink to this definition">¶</a></dt>
 <dd><p>Calculate the marginal likelihood on q of the node when assumes a specif value
 and a specif parents’s assignment</p>
 <dl class="field-list simple">
@@ -237,8 +241,8 @@ and a specif parents’s assignment</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.single_internal_cim_xxu_marginal_likelihood_theta">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.single_internal_cim_xxu_marginal_likelihood_theta">
-<code class="sig-name descname">single_internal_cim_xxu_marginal_likelihood_theta</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">M_xxu_suff_stats</span><span class="p">:</span> <span class="n">float</span></em>, <em class="sig-param"><span class="n">alpha_xxu</span><span class="p">:</span> <span class="n">float</span> <span class="o">=</span> <span class="default_value">1</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.single_internal_cim_xxu_marginal_likelihood_theta" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">single_internal_cim_xxu_marginal_likelihood_theta</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">M_xxu_suff_stats</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">float</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">alpha_xxu</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">float</span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">1</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.single_internal_cim_xxu_marginal_likelihood_theta" title="Permalink to this definition">¶</a></dt>
 <dd><p>Calculate the second part of the marginal likelihood over theta formula</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
@@ -257,8 +261,8 @@ and a specif parents’s assignment</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.variable_cim_xu_marginal_likelihood_q">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.variable_cim_xu_marginal_likelihood_q">
-<code class="sig-name descname">variable_cim_xu_marginal_likelihood_q</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">cim</span><span class="p">:</span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix" title="PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix">PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix</a></span></em>, <em class="sig-param"><span class="n">tau_xu</span><span class="p">:</span> <span class="n">float</span> <span class="o">=</span> <span class="default_value">0.1</span></em>, <em class="sig-param"><span class="n">alpha_xu</span><span class="p">:</span> <span class="n">float</span> <span class="o">=</span> <span class="default_value">1</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.variable_cim_xu_marginal_likelihood_q" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">variable_cim_xu_marginal_likelihood_q</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">cim</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix" title="PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix"><span class="pre">PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix</span></a></span></em>, <em class="sig-param"><span class="n"><span class="pre">tau_xu</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">float</span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">0.1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">alpha_xu</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">float</span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">1</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.variable_cim_xu_marginal_likelihood_q" title="Permalink to this definition">¶</a></dt>
 <dd><p>Calculate the value of the marginal likelihood over q given a cim</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
@@ -278,8 +282,8 @@ and a specif parents’s assignment</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.variable_cim_xu_marginal_likelihood_theta">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.variable_cim_xu_marginal_likelihood_theta">
-<code class="sig-name descname">variable_cim_xu_marginal_likelihood_theta</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">cim</span><span class="p">:</span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix" title="PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix">PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix</a></span></em>, <em class="sig-param"><span class="n">alpha_xu</span><span class="p">:</span> <span class="n">float</span></em>, <em class="sig-param"><span class="n">alpha_xxu</span><span class="p">:</span> <span class="n">float</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.variable_cim_xu_marginal_likelihood_theta" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">variable_cim_xu_marginal_likelihood_theta</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">cim</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix" title="PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix"><span class="pre">PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix</span></a></span></em>, <em class="sig-param"><span class="n"><span class="pre">alpha_xu</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">float</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">alpha_xxu</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">float</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.variable_cim_xu_marginal_likelihood_theta" title="Permalink to this definition">¶</a></dt>
 <dd><p>Calculate the value of the marginal likelihood over theta given a cim</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
@@ -304,8 +308,8 @@ and a specif parents’s assignment</p>
 <section id="module-PyCTBN.PyCTBN.estimators.parameters_estimator">
 <span id="pyctbn-pyctbn-estimators-parameters-estimator-module"></span><h2>PyCTBN.PyCTBN.estimators.parameters_estimator module<a class="headerlink" href="#module-PyCTBN.PyCTBN.estimators.parameters_estimator" title="Permalink to this headline">¶</a></h2>
 <dl class="py class">
-<dt id="PyCTBN.PyCTBN.estimators.parameters_estimator.ParametersEstimator">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.estimators.parameters_estimator.ParametersEstimator">
-<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.PyCTBN.estimators.parameters_estimator.</code><code class="sig-name descname">ParametersEstimator</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">trajectories</span><span class="p">:</span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory" title="PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory">PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory</a></span></em>, <em class="sig-param"><span class="n">net_graph</span><span class="p">:</span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph" title="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph">PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph</a></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.parameters_estimator.ParametersEstimator" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span> </em><span class="sig-prename descclassname"><span class="pre">PyCTBN.PyCTBN.estimators.parameters_estimator.</span></span><span class="sig-name descname"><span class="pre">ParametersEstimator</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">trajectories</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory" title="PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory"><span class="pre">PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory</span></a></span></em>, <em class="sig-param"><span class="n"><span class="pre">net_graph</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph" title="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph"><span class="pre">PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph</span></a></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.parameters_estimator.ParametersEstimator" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></p>
 <p>Has the task of computing the cims of particular node given the trajectories and the net structure
 in the graph <code class="docutils literal notranslate"><span class="pre">_net_graph</span></code>.</p>
@@ -321,8 +325,8 @@ in the graph <code class="docutils literal notranslate"><span class="pre">_net_g
 </dd>
 </dl>
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.estimators.parameters_estimator.ParametersEstimator.compute_parameters_for_node">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.estimators.parameters_estimator.ParametersEstimator.compute_parameters_for_node">
-<code class="sig-name descname">compute_parameters_for_node</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">node_id</span><span class="p">:</span> <span class="n">str</span></em><span class="sig-paren">)</span> &#x2192; <a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims" title="PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims">PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims</a><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.parameters_estimator.ParametersEstimator.compute_parameters_for_node" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">compute_parameters_for_node</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">node_id</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">str</span></span></em><span class="sig-paren">)</span> &#x2192; <a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims" title="PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims"><span class="pre">PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims</span></a><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.parameters_estimator.ParametersEstimator.compute_parameters_for_node" title="Permalink to this definition">¶</a></dt>
 <dd><p>Compute the CIMS of the node identified by the label <code class="docutils literal notranslate"><span class="pre">node_id</span></code>.</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
@@ -338,8 +342,8 @@ in the graph <code class="docutils literal notranslate"><span class="pre">_net_g
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.estimators.parameters_estimator.ParametersEstimator.compute_state_res_time_for_node">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.estimators.parameters_estimator.ParametersEstimator.compute_state_res_time_for_node">
-<em class="property">static </em><code class="sig-name descname">compute_state_res_time_for_node</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">times</span><span class="p">:</span> <span class="n">numpy.ndarray</span></em>, <em class="sig-param"><span class="n">trajectory</span><span class="p">:</span> <span class="n">numpy.ndarray</span></em>, <em class="sig-param"><span class="n">cols_filter</span><span class="p">:</span> <span class="n">numpy.ndarray</span></em>, <em class="sig-param"><span class="n">scalar_indexes_struct</span><span class="p">:</span> <span class="n">numpy.ndarray</span></em>, <em class="sig-param"><span class="n">T</span><span class="p">:</span> <span class="n">numpy.ndarray</span></em><span class="sig-paren">)</span> &#x2192; None<a class="headerlink" href="#PyCTBN.PyCTBN.estimators.parameters_estimator.ParametersEstimator.compute_state_res_time_for_node" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">static</span> </em><span class="sig-name descname"><span class="pre">compute_state_res_time_for_node</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">times</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">numpy.ndarray</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">trajectory</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">numpy.ndarray</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cols_filter</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">numpy.ndarray</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">scalar_indexes_struct</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">numpy.ndarray</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">T</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">numpy.ndarray</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">None</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.parameters_estimator.ParametersEstimator.compute_state_res_time_for_node" title="Permalink to this definition">¶</a></dt>
 <dd><p>Compute the state residence times for a node and fill the matrix <code class="docutils literal notranslate"><span class="pre">T</span></code> with the results</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
@@ -356,8 +360,8 @@ in the graph <code class="docutils literal notranslate"><span class="pre">_net_g
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.estimators.parameters_estimator.ParametersEstimator.compute_state_transitions_for_a_node">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.estimators.parameters_estimator.ParametersEstimator.compute_state_transitions_for_a_node">
-<em class="property">static </em><code class="sig-name descname">compute_state_transitions_for_a_node</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">node_indx</span><span class="p">:</span> <span class="n">int</span></em>, <em class="sig-param"><span class="n">trajectory</span><span class="p">:</span> <span class="n">numpy.ndarray</span></em>, <em class="sig-param"><span class="n">cols_filter</span><span class="p">:</span> <span class="n">numpy.ndarray</span></em>, <em class="sig-param"><span class="n">scalar_indexing</span><span class="p">:</span> <span class="n">numpy.ndarray</span></em>, <em class="sig-param"><span class="n">M</span><span class="p">:</span> <span class="n">numpy.ndarray</span></em><span class="sig-paren">)</span> &#x2192; None<a class="headerlink" href="#PyCTBN.PyCTBN.estimators.parameters_estimator.ParametersEstimator.compute_state_transitions_for_a_node" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">static</span> </em><span class="sig-name descname"><span class="pre">compute_state_transitions_for_a_node</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">node_indx</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">int</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">trajectory</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">numpy.ndarray</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cols_filter</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">numpy.ndarray</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">scalar_indexing</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">numpy.ndarray</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">M</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">numpy.ndarray</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">None</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.parameters_estimator.ParametersEstimator.compute_state_transitions_for_a_node" title="Permalink to this definition">¶</a></dt>
 <dd><p>Compute the state residence times for a node and fill the matrices <code class="docutils literal notranslate"><span class="pre">M</span></code> with the results.</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
@@ -373,8 +377,8 @@ in the graph <code class="docutils literal notranslate"><span class="pre">_net_g
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.estimators.parameters_estimator.ParametersEstimator.fast_init">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.estimators.parameters_estimator.ParametersEstimator.fast_init">
-<code class="sig-name descname">fast_init</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">node_id</span><span class="p">:</span> <span class="n">str</span></em><span class="sig-paren">)</span> &#x2192; None<a class="headerlink" href="#PyCTBN.PyCTBN.estimators.parameters_estimator.ParametersEstimator.fast_init" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">fast_init</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">node_id</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">str</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">None</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.parameters_estimator.ParametersEstimator.fast_init" title="Permalink to this definition">¶</a></dt>
 <dd><p>Initializes all the necessary structures for the parameters estimation for the node <code class="docutils literal notranslate"><span class="pre">node_id</span></code>.</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
@@ -389,8 +393,8 @@ in the graph <code class="docutils literal notranslate"><span class="pre">_net_g
 <section id="module-PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator">
 <span id="pyctbn-pyctbn-estimators-structure-constraint-based-estimator-module"></span><h2>PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator module<a class="headerlink" href="#module-PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator" title="Permalink to this headline">¶</a></h2>
 <dl class="py class">
-<dt id="PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator">
-<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.</code><code class="sig-name descname">StructureConstraintBasedEstimator</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">sample_path</span><span class="p">:</span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath" title="PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath">PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath</a></span></em>, <em class="sig-param"><span class="n">exp_test_alfa</span><span class="p">:</span> <span class="n">float</span></em>, <em class="sig-param"><span class="n">chi_test_alfa</span><span class="p">:</span> <span class="n">float</span></em>, <em class="sig-param"><span class="n">known_edges</span><span class="p">:</span> <span class="n">List</span> <span class="o">=</span> <span class="default_value">[]</span></em>, <em class="sig-param"><span class="n">thumb_threshold</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">25</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span> </em><span class="sig-prename descclassname"><span class="pre">PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.</span></span><span class="sig-name descname"><span class="pre">StructureConstraintBasedEstimator</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">sample_path</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath" title="PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath"><span class="pre">PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath</span></a></span></em>, <em class="sig-param"><span class="n"><span class="pre">exp_test_alfa</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">float</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">chi_test_alfa</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">float</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">known_edges</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">List</span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">[]</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">thumb_threshold</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">int</span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">25</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <a class="reference internal" href="#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator" title="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator"><code class="xref py py-class docutils literal notranslate"><span class="pre">PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator</span></code></a></p>
 <p>Has the task of estimating the network structure given the trajectories in samplepath by using a constraint-based approach.</p>
 <dl class="field-list simple">
@@ -420,8 +424,8 @@ in the graph <code class="docutils literal notranslate"><span class="pre">_net_g
 </dd>
 </dl>
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.complete_test">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.complete_test">
-<code class="sig-name descname">complete_test</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">test_parent</span><span class="p">:</span> <span class="n">str</span></em>, <em class="sig-param"><span class="n">test_child</span><span class="p">:</span> <span class="n">str</span></em>, <em class="sig-param"><span class="n">parent_set</span><span class="p">:</span> <span class="n">List</span></em>, <em class="sig-param"><span class="n">child_states_numb</span><span class="p">:</span> <span class="n">int</span></em>, <em class="sig-param"><span class="n">tot_vars_count</span><span class="p">:</span> <span class="n">int</span></em>, <em class="sig-param"><span class="n">parent_indx</span></em>, <em class="sig-param"><span class="n">child_indx</span></em><span class="sig-paren">)</span> &#x2192; bool<a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.complete_test" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">complete_test</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">test_parent</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">str</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">test_child</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">str</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">parent_set</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">List</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">child_states_numb</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">int</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">tot_vars_count</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">int</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">parent_indx</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">child_indx</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">bool</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.complete_test" title="Permalink to this definition">¶</a></dt>
 <dd><p>Performs a complete independence test on the directed graphs G1 = {test_child U parent_set}
 G2 = {G1 U test_parent} (added as an additional parent of the test_child).
 Generates all the necessary structures and datas to perform the tests.</p>
@@ -445,8 +449,8 @@ Generates all the necessary structures and datas to perform the tests.</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.compute_thumb_value">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.compute_thumb_value">
-<code class="sig-name descname">compute_thumb_value</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">parent_val</span></em>, <em class="sig-param"><span class="n">child_val</span></em>, <em class="sig-param"><span class="n">parent_set_vals</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.compute_thumb_value" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">compute_thumb_value</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">parent_val</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">child_val</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">parent_set_vals</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.compute_thumb_value" title="Permalink to this definition">¶</a></dt>
 <dd><p>Compute the value to test against the thumb_threshold.</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
@@ -466,8 +470,10 @@ Generates all the necessary structures and datas to perform the tests.</p>
 </dd></dl>
 
 <dl class="py method">
+
 <dt id="PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.ctpc_algorithm">
 <code class="sig-name descname">ctpc_algorithm</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">disable_multiprocessing</span><span class="p">:</span> <span class="n">bool</span> <span class="o">=</span> <span class="default_value">False</span></em>, <em class="sig-param"><span class="n">processes_number</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">None</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.ctpc_algorithm" title="Permalink to this definition">¶</a></dt>
+  
 <dd><p>Compute the CTPC algorithm over the entire net.</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
@@ -482,9 +488,11 @@ Generates all the necessary structures and datas to perform the tests.</p>
 </dd></dl>
 
 <dl class="py method">
+
 <dt id="PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.estimate_structure">
 <code class="sig-name descname">estimate_structure</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">disable_multiprocessing</span><span class="p">:</span> <span class="n">bool</span> <span class="o">=</span> <span class="default_value">False</span></em>, <em class="sig-param"><span class="n">processes_number</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">None</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.estimate_structure" title="Permalink to this definition">¶</a></dt>
 <dd><p>Compute the constraint-based algorithm to find the optimal structure</p>
+
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
 <dd class="field-odd"><ul class="simple">
@@ -498,8 +506,8 @@ Generates all the necessary structures and datas to perform the tests.</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.independence_test">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.independence_test">
-<code class="sig-name descname">independence_test</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">child_states_numb</span><span class="p">:</span> <span class="n">int</span></em>, <em class="sig-param"><span class="n">cim1</span><span class="p">:</span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix" title="PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix">PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix</a></span></em>, <em class="sig-param"><span class="n">cim2</span><span class="p">:</span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix" title="PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix">PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix</a></span></em>, <em class="sig-param"><span class="n">thumb_value</span><span class="p">:</span> <span class="n">float</span></em>, <em class="sig-param"><span class="n">parent_indx</span></em>, <em class="sig-param"><span class="n">child_indx</span></em><span class="sig-paren">)</span> &#x2192; bool<a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.independence_test" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">independence_test</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">child_states_numb</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">int</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cim1</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix" title="PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix"><span class="pre">PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix</span></a></span></em>, <em class="sig-param"><span class="n"><span class="pre">cim2</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix" title="PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix"><span class="pre">PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix</span></a></span></em>, <em class="sig-param"><span class="n"><span class="pre">thumb_value</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">float</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">parent_indx</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">child_indx</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">bool</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.independence_test" title="Permalink to this definition">¶</a></dt>
 <dd><p>Compute the actual independence test using two cims.
 It is performed first the exponential test and if the null hypothesis is not rejected,
 it is performed also the chi_test.</p>
@@ -521,8 +529,8 @@ it is performed also the chi_test.</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.one_iteration_of_CTPC_algorithm">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.one_iteration_of_CTPC_algorithm">
-<code class="sig-name descname">one_iteration_of_CTPC_algorithm</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">var_id</span><span class="p">:</span> <span class="n">str</span></em>, <em class="sig-param"><span class="n">tot_vars_count</span><span class="p">:</span> <span class="n">int</span></em><span class="sig-paren">)</span> &#x2192; List<a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.one_iteration_of_CTPC_algorithm" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">one_iteration_of_CTPC_algorithm</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">var_id</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">str</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">tot_vars_count</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">int</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">List</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.one_iteration_of_CTPC_algorithm" title="Permalink to this definition">¶</a></dt>
 <dd><p>Performs an iteration of the CTPC algorithm using the node <code class="docutils literal notranslate"><span class="pre">var_id</span></code> as <code class="docutils literal notranslate"><span class="pre">test_child</span></code>.</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
@@ -537,8 +545,8 @@ it is performed also the chi_test.</p>
 <section id="module-PyCTBN.PyCTBN.estimators.structure_estimator">
 <span id="pyctbn-pyctbn-estimators-structure-estimator-module"></span><h2>PyCTBN.PyCTBN.estimators.structure_estimator module<a class="headerlink" href="#module-PyCTBN.PyCTBN.estimators.structure_estimator" title="Permalink to this headline">¶</a></h2>
 <dl class="py class">
-<dt id="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator">
-<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.PyCTBN.estimators.structure_estimator.</code><code class="sig-name descname">StructureEstimator</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">sample_path</span><span class="p">:</span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath" title="PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath">PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath</a></span></em>, <em class="sig-param"><span class="n">known_edges</span><span class="p">:</span> <span class="n">List</span> <span class="o">=</span> <span class="default_value">None</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span> </em><span class="sig-prename descclassname"><span class="pre">PyCTBN.PyCTBN.estimators.structure_estimator.</span></span><span class="sig-name descname"><span class="pre">StructureEstimator</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">sample_path</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath" title="PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath"><span class="pre">PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath</span></a></span></em>, <em class="sig-param"><span class="n"><span class="pre">known_edges</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">Optional</span><span class="p"><span class="pre">[</span></span><span class="pre">List</span><span class="p"><span class="pre">]</span></span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></p>
 <p>Has the task of estimating the network structure given the trajectories in <code class="docutils literal notranslate"><span class="pre">samplepath</span></code>.</p>
 <dl class="field-list simple">
@@ -562,8 +570,8 @@ it is performed also the chi_test.</p>
 </dd>
 </dl>
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.adjacency_matrix">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.adjacency_matrix">
-<code class="sig-name descname">adjacency_matrix</code><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; numpy.ndarray<a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.adjacency_matrix" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">adjacency_matrix</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; <span class="pre">numpy.ndarray</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.adjacency_matrix" title="Permalink to this definition">¶</a></dt>
 <dd><p>Converts the estimated structure <code class="docutils literal notranslate"><span class="pre">_complete_graph</span></code> to a boolean adjacency matrix representation.</p>
 <dl class="field-list simple">
 <dt class="field-odd">Returns</dt>
@@ -576,8 +584,8 @@ it is performed also the chi_test.</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.build_complete_graph">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.build_complete_graph">
-<em class="property">static </em><code class="sig-name descname">build_complete_graph</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">node_ids</span><span class="p">:</span> <span class="n">List</span></em><span class="sig-paren">)</span> &#x2192; networkx.classes.digraph.DiGraph<a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.build_complete_graph" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">static</span> </em><span class="sig-name descname"><span class="pre">build_complete_graph</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">node_ids</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">List</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">networkx.classes.digraph.DiGraph</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.build_complete_graph" title="Permalink to this definition">¶</a></dt>
 <dd><p>Builds a complete directed graph (no self loops) given the nodes labels in the list <code class="docutils literal notranslate"><span class="pre">node_ids</span></code>:</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
@@ -593,8 +601,8 @@ it is performed also the chi_test.</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.build_removable_edges_matrix">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.build_removable_edges_matrix">
-<code class="sig-name descname">build_removable_edges_matrix</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">known_edges</span><span class="p">:</span> <span class="n">List</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.build_removable_edges_matrix" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">build_removable_edges_matrix</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">known_edges</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">List</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.build_removable_edges_matrix" title="Permalink to this definition">¶</a></dt>
 <dd><p>Builds a boolean matrix who shows if a edge could be removed or not, based on prior knowledge given:</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
@@ -610,8 +618,8 @@ it is performed also the chi_test.</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.estimate_structure">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.estimate_structure">
-<em class="property">abstract </em><code class="sig-name descname">estimate_structure</code><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; List<a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.estimate_structure" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">abstract</span> </em><span class="sig-name descname"><span class="pre">estimate_structure</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; <span class="pre">List</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.estimate_structure" title="Permalink to this definition">¶</a></dt>
 <dd><p>Abstract method to estimate the structure</p>
 <dl class="field-list simple">
 <dt class="field-odd">Returns</dt>
@@ -624,8 +632,8 @@ it is performed also the chi_test.</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.generate_possible_sub_sets_of_size">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.generate_possible_sub_sets_of_size">
-<em class="property">static </em><code class="sig-name descname">generate_possible_sub_sets_of_size</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">u</span><span class="p">:</span> <span class="n">List</span></em>, <em class="sig-param"><span class="n">size</span><span class="p">:</span> <span class="n">int</span></em>, <em class="sig-param"><span class="n">parent_label</span><span class="p">:</span> <span class="n">str</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.generate_possible_sub_sets_of_size" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">static</span> </em><span class="sig-name descname"><span class="pre">generate_possible_sub_sets_of_size</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">u</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">List</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">size</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">int</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">parent_label</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">str</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.generate_possible_sub_sets_of_size" title="Permalink to this definition">¶</a></dt>
 <dd><p>Creates a list containing all possible subsets of the list <code class="docutils literal notranslate"><span class="pre">u</span></code> of size <code class="docutils literal notranslate"><span class="pre">size</span></code>,
 that do not contains a the node identified by <code class="docutils literal notranslate"><span class="pre">parent_label</span></code>.</p>
 <dl class="field-list simple">
@@ -646,9 +654,11 @@ that do not contains a the node identified by <code class="docutils literal notr
 </dd></dl>
 
 <dl class="py method">
+
 <dt id="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.save_plot_estimated_structure_graph">
 <code class="sig-name descname">save_plot_estimated_structure_graph</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">file_path</span><span class="p">:</span> <span class="n">str</span></em><span class="sig-paren">)</span> &#x2192; None<a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.save_plot_estimated_structure_graph" title="Permalink to this definition">¶</a></dt>
 <dd><p>Plot the estimated structure in a graphical model style, use .png extension.</p>
+
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
 <dd class="field-odd"><p><strong>file_path</strong> – path to save the file to</p>
@@ -660,8 +670,8 @@ that do not contains a the node identified by <code class="docutils literal notr
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.save_results">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.save_results">
-<code class="sig-name descname">save_results</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">file_path</span><span class="p">:</span> <span class="n">str</span></em><span class="sig-paren">)</span> &#x2192; None<a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.save_results" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">save_results</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">file_path</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">str</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">None</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.save_results" title="Permalink to this definition">¶</a></dt>
 <dd><p>Save the estimated Structure to a .json file in file_path.</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
@@ -671,8 +681,8 @@ that do not contains a the node identified by <code class="docutils literal notr
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.spurious_edges">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.spurious_edges">
-<code class="sig-name descname">spurious_edges</code><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; List<a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.spurious_edges" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">spurious_edges</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; <span class="pre">List</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.spurious_edges" title="Permalink to this definition">¶</a></dt>
 <dd><dl class="simple">
 <dt>Return the spurious edges present in the estimated structure, if a prior net structure is present in</dt><dd><p><code class="docutils literal notranslate"><span class="pre">_sample_path.structure</span></code>.</p>
 </dd>
@@ -693,8 +703,8 @@ that do not contains a the node identified by <code class="docutils literal notr
 <section id="module-PyCTBN.PyCTBN.estimators.structure_score_based_estimator">
 <span id="pyctbn-pyctbn-estimators-structure-score-based-estimator-module"></span><h2>PyCTBN.PyCTBN.estimators.structure_score_based_estimator module<a class="headerlink" href="#module-PyCTBN.PyCTBN.estimators.structure_score_based_estimator" title="Permalink to this headline">¶</a></h2>
 <dl class="py class">
-<dt id="PyCTBN.PyCTBN.estimators.structure_score_based_estimator.StructureScoreBasedEstimator">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.estimators.structure_score_based_estimator.StructureScoreBasedEstimator">
-<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.PyCTBN.estimators.structure_score_based_estimator.</code><code class="sig-name descname">StructureScoreBasedEstimator</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">sample_path</span><span class="p">:</span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath" title="PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath">PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath</a></span></em>, <em class="sig-param"><span class="n">tau_xu</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">0.1</span></em>, <em class="sig-param"><span class="n">alpha_xu</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">1</span></em>, <em class="sig-param"><span class="n">known_edges</span><span class="p">:</span> <span class="n">List</span> <span class="o">=</span> <span class="default_value">[]</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_score_based_estimator.StructureScoreBasedEstimator" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span> </em><span class="sig-prename descclassname"><span class="pre">PyCTBN.PyCTBN.estimators.structure_score_based_estimator.</span></span><span class="sig-name descname"><span class="pre">StructureScoreBasedEstimator</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">sample_path</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath" title="PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath"><span class="pre">PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath</span></a></span></em>, <em class="sig-param"><span class="n"><span class="pre">tau_xu</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">int</span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">0.1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">alpha_xu</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">int</span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">known_edges</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">List</span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">[]</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_score_based_estimator.StructureScoreBasedEstimator" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <a class="reference internal" href="#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator" title="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator"><code class="xref py py-class docutils literal notranslate"><span class="pre">PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator</span></code></a></p>
 <p>Has the task of estimating the network structure given the trajectories in samplepath by
 using a score based approach and differt kinds of optimization algorithms.</p>
@@ -709,8 +719,8 @@ using a score based approach and differt kinds of optimization algorithms.</p>
 </dd>
 </dl>
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.estimators.structure_score_based_estimator.StructureScoreBasedEstimator.estimate_parents">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.estimators.structure_score_based_estimator.StructureScoreBasedEstimator.estimate_parents">
-<code class="sig-name descname">estimate_parents</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">node_id</span><span class="p">:</span> <span class="n">str</span></em>, <em class="sig-param"><span class="n">max_parents</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">None</span></em>, <em class="sig-param"><span class="n">iterations_number</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">40</span></em>, <em class="sig-param"><span class="n">patience</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">10</span></em>, <em class="sig-param"><span class="n">tabu_length</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">None</span></em>, <em class="sig-param"><span class="n">tabu_rules_duration</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">5</span></em>, <em class="sig-param"><span class="n">optimizer</span><span class="p">:</span> <span class="n">str</span> <span class="o">=</span> <span class="default_value">'hill'</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_score_based_estimator.StructureScoreBasedEstimator.estimate_parents" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">estimate_parents</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">node_id</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">str</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">max_parents</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">Optional</span><span class="p"><span class="pre">[</span></span><span class="pre">int</span><span class="p"><span class="pre">]</span></span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">iterations_number</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">int</span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">40</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">patience</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">int</span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">10</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">tabu_length</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">Optional</span><span class="p"><span class="pre">[</span></span><span class="pre">int</span><span class="p"><span class="pre">]</span></span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">tabu_rules_duration</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">int</span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">5</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">optimizer</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">str</span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">'hill'</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_score_based_estimator.StructureScoreBasedEstimator.estimate_parents" title="Permalink to this definition">¶</a></dt>
 <dd><p>Use the FamScore of a node in order to find the best parent nodes</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
@@ -734,8 +744,10 @@ using a score based approach and differt kinds of optimization algorithms.</p>
 </dd></dl>
 
 <dl class="py method">
+
 <dt id="PyCTBN.PyCTBN.estimators.structure_score_based_estimator.StructureScoreBasedEstimator.estimate_structure">
 <code class="sig-name descname">estimate_structure</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">max_parents</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">None</span></em>, <em class="sig-param"><span class="n">iterations_number</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">40</span></em>, <em class="sig-param"><span class="n">patience</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">None</span></em>, <em class="sig-param"><span class="n">tabu_length</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">None</span></em>, <em class="sig-param"><span class="n">tabu_rules_duration</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">None</span></em>, <em class="sig-param"><span class="n">optimizer</span><span class="p">:</span> <span class="n">str</span> <span class="o">=</span> <span class="default_value">'tabu'</span></em>, <em class="sig-param"><span class="n">disable_multiprocessing</span><span class="p">:</span> <span class="n">bool</span> <span class="o">=</span> <span class="default_value">False</span></em>, <em class="sig-param"><span class="n">processes_number</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">None</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_score_based_estimator.StructureScoreBasedEstimator.estimate_structure" title="Permalink to this definition">¶</a></dt>
+
 <dd><p>Compute the score-based algorithm to find the optimal structure</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
@@ -756,8 +768,8 @@ using a score based approach and differt kinds of optimization algorithms.</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.estimators.structure_score_based_estimator.StructureScoreBasedEstimator.get_score_from_graph">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.estimators.structure_score_based_estimator.StructureScoreBasedEstimator.get_score_from_graph">
-<code class="sig-name descname">get_score_from_graph</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">graph</span><span class="p">:</span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph" title="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph">PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph</a></span></em>, <em class="sig-param"><span class="n">node_id</span><span class="p">:</span> <span class="n">str</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_score_based_estimator.StructureScoreBasedEstimator.get_score_from_graph" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">get_score_from_graph</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">graph</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph" title="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph"><span class="pre">PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph</span></a></span></em>, <em class="sig-param"><span class="n"><span class="pre">node_id</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">str</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.estimators.structure_score_based_estimator.StructureScoreBasedEstimator.get_score_from_graph" title="Permalink to this definition">¶</a></dt>
 <dd><p>Get the FamScore of a node</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
@@ -820,6 +832,9 @@ using a score based approach and differt kinds of optimization algorithms.</p>
             FILE_SUFFIX:'.html',
             HAS_SOURCE:  true
         };
+    </script>
+    <script type="text/javascript" src="_static/documentation_options.js">
+
     </script>
     <script type="text/javascript" src="_static/jquery.js">
 
@@ -830,9 +845,6 @@ using a score based approach and differt kinds of optimization algorithms.</p>
     <script type="text/javascript" src="_static/doctools.js">
 
     </script>
-    <script type="text/javascript" src="_static/language_data.js">
-
-    </script>
 
   
 

docs/PyCTBN.PyCTBN.html

@@ -19,6 +19,10 @@
     <link rel="stylesheet" href="_static/css/pdj.css" type="text/css" />
 
   
+    <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
+  
+    <link rel="stylesheet" href="_static/css/pdj.css" type="text/css" />
+  
 
   
 
@@ -142,18 +146,22 @@
 <li class="toctree-l1"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html">PyCTBN.PyCTBN.structure_graph package</a><ul>
 <li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#submodules">Submodules</a></li>
 <li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix">PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.network_generator">PyCTBN.PyCTBN.structure_graph.network_generator module</a></li>
 <li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.network_graph">PyCTBN.PyCTBN.structure_graph.network_graph module</a></li>
 <li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.sample_path">PyCTBN.PyCTBN.structure_graph.sample_path module</a></li>
 <li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.set_of_cims">PyCTBN.PyCTBN.structure_graph.set_of_cims module</a></li>
 <li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.structure">PyCTBN.PyCTBN.structure_graph.structure module</a></li>
 <li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.trajectory">PyCTBN.PyCTBN.structure_graph.trajectory module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.trajectory_generator">PyCTBN.PyCTBN.structure_graph.trajectory_generator module</a></li>
 <li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph">Module contents</a></li>
 </ul>
 </li>
 <li class="toctree-l1"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html">PyCTBN.PyCTBN.utility package</a><ul>
 <li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#submodules">Submodules</a></li>
+<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.abstract_exporter">PyCTBN.PyCTBN.utility.abstract_exporter module</a></li>
 <li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.abstract_importer">PyCTBN.PyCTBN.utility.abstract_importer module</a></li>
 <li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.cache">PyCTBN.PyCTBN.utility.cache module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.json_exporter">PyCTBN.PyCTBN.utility.json_exporter module</a></li>
 <li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.json_importer">PyCTBN.PyCTBN.utility.json_importer module</a></li>
 <li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.sample_importer">PyCTBN.PyCTBN.utility.sample_importer module</a></li>
 <li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility">Module contents</a></li>
@@ -204,6 +212,9 @@
             FILE_SUFFIX:'.html',
             HAS_SOURCE:  true
         };
+    </script>
+    <script type="text/javascript" src="_static/documentation_options.js">
+
     </script>
     <script type="text/javascript" src="_static/jquery.js">
 
@@ -214,9 +225,6 @@
     <script type="text/javascript" src="_static/doctools.js">
 
     </script>
-    <script type="text/javascript" src="_static/language_data.js">
-
-    </script>
 
   
 

docs/PyCTBN.PyCTBN.optimizers.html

@@ -19,6 +19,10 @@
     <link rel="stylesheet" href="_static/css/pdj.css" type="text/css" />
 
   
+    <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
+  
+    <link rel="stylesheet" href="_static/css/pdj.css" type="text/css" />
+  
 
   
 
@@ -123,8 +127,8 @@
 <section id="module-PyCTBN.PyCTBN.optimizers.constraint_based_optimizer">
 <span id="pyctbn-pyctbn-optimizers-constraint-based-optimizer-module"></span><h2>PyCTBN.PyCTBN.optimizers.constraint_based_optimizer module<a class="headerlink" href="#module-PyCTBN.PyCTBN.optimizers.constraint_based_optimizer" title="Permalink to this headline">¶</a></h2>
 <dl class="py class">
-<dt id="PyCTBN.PyCTBN.optimizers.constraint_based_optimizer.ConstraintBasedOptimizer">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.optimizers.constraint_based_optimizer.ConstraintBasedOptimizer">
-<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.PyCTBN.optimizers.constraint_based_optimizer.</code><code class="sig-name descname">ConstraintBasedOptimizer</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">node_id</span><span class="p">:</span> <span class="n">str</span></em>, <em class="sig-param"><span class="n">structure_estimator</span><span class="p">:</span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator" title="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator">PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator</a></span></em>, <em class="sig-param"><span class="n">tot_vars_count</span><span class="p">:</span> <span class="n">int</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.optimizers.constraint_based_optimizer.ConstraintBasedOptimizer" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span> </em><span class="sig-prename descclassname"><span class="pre">PyCTBN.PyCTBN.optimizers.constraint_based_optimizer.</span></span><span class="sig-name descname"><span class="pre">ConstraintBasedOptimizer</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">node_id</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">str</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">structure_estimator</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator" title="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator"><span class="pre">PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator</span></a></span></em>, <em class="sig-param"><span class="n"><span class="pre">tot_vars_count</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">int</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.optimizers.constraint_based_optimizer.ConstraintBasedOptimizer" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <a class="reference internal" href="#PyCTBN.PyCTBN.optimizers.optimizer.Optimizer" title="PyCTBN.PyCTBN.optimizers.optimizer.Optimizer"><code class="xref py py-class docutils literal notranslate"><span class="pre">PyCTBN.PyCTBN.optimizers.optimizer.Optimizer</span></code></a></p>
 <p>Optimizer class that implement a CTPC Algorithm</p>
 <dl class="field-list simple">
@@ -137,8 +141,8 @@
 </dd>
 </dl>
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.optimizers.constraint_based_optimizer.ConstraintBasedOptimizer.optimize_structure">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.optimizers.constraint_based_optimizer.ConstraintBasedOptimizer.optimize_structure">
-<code class="sig-name descname">optimize_structure</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.optimizers.constraint_based_optimizer.ConstraintBasedOptimizer.optimize_structure" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">optimize_structure</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.optimizers.constraint_based_optimizer.ConstraintBasedOptimizer.optimize_structure" title="Permalink to this definition">¶</a></dt>
 <dd><p>Compute Optimization process for a structure_estimator by using a CTPC Algorithm</p>
 <dl class="field-list simple">
 <dt class="field-odd">Returns</dt>
@@ -156,8 +160,8 @@
 <section id="module-PyCTBN.PyCTBN.optimizers.hill_climbing_search">
 <span id="pyctbn-pyctbn-optimizers-hill-climbing-search-module"></span><h2>PyCTBN.PyCTBN.optimizers.hill_climbing_search module<a class="headerlink" href="#module-PyCTBN.PyCTBN.optimizers.hill_climbing_search" title="Permalink to this headline">¶</a></h2>
 <dl class="py class">
-<dt id="PyCTBN.PyCTBN.optimizers.hill_climbing_search.HillClimbing">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.optimizers.hill_climbing_search.HillClimbing">
-<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.PyCTBN.optimizers.hill_climbing_search.</code><code class="sig-name descname">HillClimbing</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">node_id</span><span class="p">:</span> <span class="n">str</span></em>, <em class="sig-param"><span class="n">structure_estimator</span><span class="p">:</span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator" title="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator">PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator</a></span></em>, <em class="sig-param"><span class="n">max_parents</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">None</span></em>, <em class="sig-param"><span class="n">iterations_number</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">40</span></em>, <em class="sig-param"><span class="n">patience</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">None</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.optimizers.hill_climbing_search.HillClimbing" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span> </em><span class="sig-prename descclassname"><span class="pre">PyCTBN.PyCTBN.optimizers.hill_climbing_search.</span></span><span class="sig-name descname"><span class="pre">HillClimbing</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">node_id</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">str</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">structure_estimator</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator" title="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator"><span class="pre">PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator</span></a></span></em>, <em class="sig-param"><span class="n"><span class="pre">max_parents</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">Optional</span><span class="p"><span class="pre">[</span></span><span class="pre">int</span><span class="p"><span class="pre">]</span></span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">iterations_number</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">int</span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">40</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">patience</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">Optional</span><span class="p"><span class="pre">[</span></span><span class="pre">int</span><span class="p"><span class="pre">]</span></span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.optimizers.hill_climbing_search.HillClimbing" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <a class="reference internal" href="#PyCTBN.PyCTBN.optimizers.optimizer.Optimizer" title="PyCTBN.PyCTBN.optimizers.optimizer.Optimizer"><code class="xref py py-class docutils literal notranslate"><span class="pre">PyCTBN.PyCTBN.optimizers.optimizer.Optimizer</span></code></a></p>
 <p>Optimizer class that implement Hill Climbing Search</p>
 <dl class="field-list simple">
@@ -172,8 +176,8 @@
 </dd>
 </dl>
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.optimizers.hill_climbing_search.HillClimbing.optimize_structure">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.optimizers.hill_climbing_search.HillClimbing.optimize_structure">
-<code class="sig-name descname">optimize_structure</code><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; List<a class="headerlink" href="#PyCTBN.PyCTBN.optimizers.hill_climbing_search.HillClimbing.optimize_structure" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">optimize_structure</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; <span class="pre">List</span><a class="headerlink" href="#PyCTBN.PyCTBN.optimizers.hill_climbing_search.HillClimbing.optimize_structure" title="Permalink to this definition">¶</a></dt>
 <dd><p>Compute Optimization process for a structure_estimator by using a Hill Climbing Algorithm</p>
 <dl class="field-list simple">
 <dt class="field-odd">Returns</dt>
@@ -191,8 +195,8 @@
 <section id="module-PyCTBN.PyCTBN.optimizers.optimizer">
 <span id="pyctbn-pyctbn-optimizers-optimizer-module"></span><h2>PyCTBN.PyCTBN.optimizers.optimizer module<a class="headerlink" href="#module-PyCTBN.PyCTBN.optimizers.optimizer" title="Permalink to this headline">¶</a></h2>
 <dl class="py class">
-<dt id="PyCTBN.PyCTBN.optimizers.optimizer.Optimizer">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.optimizers.optimizer.Optimizer">
-<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.PyCTBN.optimizers.optimizer.</code><code class="sig-name descname">Optimizer</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">node_id</span><span class="p">:</span> <span class="n">str</span></em>, <em class="sig-param"><span class="n">structure_estimator</span><span class="p">:</span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator" title="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator">PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator</a></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.optimizers.optimizer.Optimizer" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span> </em><span class="sig-prename descclassname"><span class="pre">PyCTBN.PyCTBN.optimizers.optimizer.</span></span><span class="sig-name descname"><span class="pre">Optimizer</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">node_id</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">str</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">structure_estimator</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator" title="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator"><span class="pre">PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator</span></a></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.optimizers.optimizer.Optimizer" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">abc.ABC</span></code></p>
 <p>Interface class for all the optimizer’s child PyCTBN</p>
 <dl class="field-list simple">
@@ -204,8 +208,8 @@
 </dd>
 </dl>
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.optimizers.optimizer.Optimizer.optimize_structure">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.optimizers.optimizer.Optimizer.optimize_structure">
-<em class="property">abstract </em><code class="sig-name descname">optimize_structure</code><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; List<a class="headerlink" href="#PyCTBN.PyCTBN.optimizers.optimizer.Optimizer.optimize_structure" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">abstract</span> </em><span class="sig-name descname"><span class="pre">optimize_structure</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; <span class="pre">List</span><a class="headerlink" href="#PyCTBN.PyCTBN.optimizers.optimizer.Optimizer.optimize_structure" title="Permalink to this definition">¶</a></dt>
 <dd><p>Compute Optimization process for a structure_estimator</p>
 <dl class="field-list simple">
 <dt class="field-odd">Returns</dt>
@@ -223,8 +227,8 @@
 <section id="module-PyCTBN.PyCTBN.optimizers.tabu_search">
 <span id="pyctbn-pyctbn-optimizers-tabu-search-module"></span><h2>PyCTBN.PyCTBN.optimizers.tabu_search module<a class="headerlink" href="#module-PyCTBN.PyCTBN.optimizers.tabu_search" title="Permalink to this headline">¶</a></h2>
 <dl class="py class">
-<dt id="PyCTBN.PyCTBN.optimizers.tabu_search.TabuSearch">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.optimizers.tabu_search.TabuSearch">
-<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.PyCTBN.optimizers.tabu_search.</code><code class="sig-name descname">TabuSearch</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">node_id</span><span class="p">:</span> <span class="n">str</span></em>, <em class="sig-param"><span class="n">structure_estimator</span><span class="p">:</span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator" title="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator">PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator</a></span></em>, <em class="sig-param"><span class="n">max_parents</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">None</span></em>, <em class="sig-param"><span class="n">iterations_number</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">40</span></em>, <em class="sig-param"><span class="n">patience</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">None</span></em>, <em class="sig-param"><span class="n">tabu_length</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">None</span></em>, <em class="sig-param"><span class="n">tabu_rules_duration</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.optimizers.tabu_search.TabuSearch" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span> </em><span class="sig-prename descclassname"><span class="pre">PyCTBN.PyCTBN.optimizers.tabu_search.</span></span><span class="sig-name descname"><span class="pre">TabuSearch</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">node_id</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">str</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">structure_estimator</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator" title="PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator"><span class="pre">PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator</span></a></span></em>, <em class="sig-param"><span class="n"><span class="pre">max_parents</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">Optional</span><span class="p"><span class="pre">[</span></span><span class="pre">int</span><span class="p"><span class="pre">]</span></span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">iterations_number</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">int</span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">40</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">patience</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">Optional</span><span class="p"><span class="pre">[</span></span><span class="pre">int</span><span class="p"><span class="pre">]</span></span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">tabu_length</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">Optional</span><span class="p"><span class="pre">[</span></span><span class="pre">int</span><span class="p"><span class="pre">]</span></span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">tabu_rules_duration</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.optimizers.tabu_search.TabuSearch" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <a class="reference internal" href="#PyCTBN.PyCTBN.optimizers.optimizer.Optimizer" title="PyCTBN.PyCTBN.optimizers.optimizer.Optimizer"><code class="xref py py-class docutils literal notranslate"><span class="pre">PyCTBN.PyCTBN.optimizers.optimizer.Optimizer</span></code></a></p>
 <p>Optimizer class that implement Tabu Search</p>
 <dl class="field-list simple">
@@ -241,8 +245,8 @@
 </dd>
 </dl>
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.optimizers.tabu_search.TabuSearch.optimize_structure">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.optimizers.tabu_search.TabuSearch.optimize_structure">
-<code class="sig-name descname">optimize_structure</code><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; List<a class="headerlink" href="#PyCTBN.PyCTBN.optimizers.tabu_search.TabuSearch.optimize_structure" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">optimize_structure</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; <span class="pre">List</span><a class="headerlink" href="#PyCTBN.PyCTBN.optimizers.tabu_search.TabuSearch.optimize_structure" title="Permalink to this definition">¶</a></dt>
 <dd><p>Compute Optimization process for a structure_estimator by using a Hill Climbing Algorithm</p>
 <dl class="field-list simple">
 <dt class="field-odd">Returns</dt>
@@ -299,6 +303,9 @@
             FILE_SUFFIX:'.html',
             HAS_SOURCE:  true
         };
+    </script>
+    <script type="text/javascript" src="_static/documentation_options.js">
+
     </script>
     <script type="text/javascript" src="_static/jquery.js">
 
@@ -309,9 +316,6 @@
     <script type="text/javascript" src="_static/doctools.js">
 
     </script>
-    <script type="text/javascript" src="_static/language_data.js">
-
-    </script>
 
   
 

docs/PyCTBN.PyCTBN.structure_graph.html

@@ -19,6 +19,10 @@
     <link rel="stylesheet" href="_static/css/pdj.css" type="text/css" />
 
   
+    <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
+  
+    <link rel="stylesheet" href="_static/css/pdj.css" type="text/css" />
+  
 
   
 
@@ -123,8 +127,8 @@
 <section id="module-PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix">
 <span id="pyctbn-pyctbn-structure-graph-conditional-intensity-matrix-module"></span><h2>PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix module<a class="headerlink" href="#module-PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix" title="Permalink to this headline">¶</a></h2>
 <dl class="py class">
-<dt id="PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix">
-<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.</code><code class="sig-name descname">ConditionalIntensityMatrix</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">state_residence_times</span><span class="p">:</span> <span class="n">numpy.array</span></em>, <em class="sig-param"><span class="n">state_transition_matrix</span><span class="p">:</span> <span class="n">numpy.array</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span> </em><span class="sig-prename descclassname"><span class="pre">PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.</span></span><span class="sig-name descname"><span class="pre">ConditionalIntensityMatrix</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">state_residence_times</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">Optional</span><span class="p"><span class="pre">[</span></span><span class="pre">numpy.array</span><span class="p"><span class="pre">]</span></span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">state_transition_matrix</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">Optional</span><span class="p"><span class="pre">[</span></span><span class="pre">numpy.array</span><span class="p"><span class="pre">]</span></span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cim</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">Optional</span><span class="p"><span class="pre">[</span></span><span class="pre">numpy.array</span><span class="p"><span class="pre">]</span></span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></p>
 <p>Abstracts the Conditional Intesity matrix of a node as aggregation of the state residence times vector
 and state transition matrix and the actual CIM matrix.</p>
@@ -139,26 +143,103 @@ and state transition matrix and the actual CIM matrix.</p>
 <dd class="field-even"><p>the actual cim of the node</p>
 </dd>
 </dl>
-<dl class="py method">
+<dl class="py property">
-<dt id="PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix.cim">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix.cim">
-<em class="property">property </em><code class="sig-name descname">cim</code><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix.cim" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span> </em><span class="sig-name descname"><span class="pre">cim</span></span><em class="property"><span class="pre">:</span> <span class="pre">numpy.ndarray</span></em><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix.cim" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix.compute_cim_coefficients">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix.compute_cim_coefficients">
-<code class="sig-name descname">compute_cim_coefficients</code><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; None<a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix.compute_cim_coefficients" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">compute_cim_coefficients</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; <span class="pre">None</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix.compute_cim_coefficients" title="Permalink to this definition">¶</a></dt>
 <dd><p>Compute the coefficients of the matrix _cim by using the following equality q_xx’ = M[x, x’] / T[x].
 The class member <code class="docutils literal notranslate"><span class="pre">_cim</span></code> will contain the computed cim</p>
 </dd></dl>
 
-<dl class="py method">
+<dl class="py property">
-<dt id="PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix.state_residence_times">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix.state_residence_times">
-<em class="property">property </em><code class="sig-name descname">state_residence_times</code><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix.state_residence_times" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span> </em><span class="sig-name descname"><span class="pre">state_residence_times</span></span><em class="property"><span class="pre">:</span> <span class="pre">numpy.ndarray</span></em><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix.state_residence_times" title="Permalink to this definition">¶</a></dt>
+<dd></dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix.state_transition_matrix">
+<em class="property"><span class="pre">property</span> </em><span class="sig-name descname"><span class="pre">state_transition_matrix</span></span><em class="property"><span class="pre">:</span> <span class="pre">numpy.ndarray</span></em><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix.state_transition_matrix" title="Permalink to this definition">¶</a></dt>
+<dd></dd></dl>
+
+</dd></dl>
+
+</div>
+<div class="section" id="module-PyCTBN.PyCTBN.structure_graph.network_generator">
+<span id="pyctbn-pyctbn-structure-graph-network-generator-module"></span><h2>PyCTBN.PyCTBN.structure_graph.network_generator module<a class="headerlink" href="#module-PyCTBN.PyCTBN.structure_graph.network_generator" title="Permalink to this headline">¶</a></h2>
+<dl class="py class">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.network_generator.NetworkGenerator">
+<em class="property"><span class="pre">class</span> </em><span class="sig-prename descclassname"><span class="pre">PyCTBN.PyCTBN.structure_graph.network_generator.</span></span><span class="sig-name descname"><span class="pre">NetworkGenerator</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">labels</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vals</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_generator.NetworkGenerator" title="Permalink to this definition">¶</a></dt>
+<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></p>
+<p>Provides the methods to generate a network graph and the CIMs related to it
+Items in _labels, _vals and _indxs are related, and therefore respect the same order</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>_labels</strong> (<em>List</em>) – List of variables labels that will be part of the network</p></li>
+<li><p><strong>_vals</strong> (<em>List</em>) – List of cardinalities of the variables in network (defined in the same order as _labels)</p></li>
+<li><p><strong>_indxs</strong> (<em>List</em>) – List of the nodes indexes</p></li>
+<li><p><strong>_cims</strong> (<em>Dict</em>) – It contains, for each variable label (the key), the SetOfCims object related to it</p></li>
+<li><p><strong>_graph</strong> (<a class="reference internal" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph" title="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph"><em>NetworkGraph</em></a>) – The NetworkGraph object representing the generated structure</p></li>
+</ul>
+</dd>
+</dl>
+<dl class="py property">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.network_generator.NetworkGenerator.cims">
+<em class="property"><span class="pre">property</span> </em><span class="sig-name descname"><span class="pre">cims</span></span><em class="property"><span class="pre">:</span> <span class="pre">dict</span></em><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_generator.NetworkGenerator.cims" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
+<dl class="py property">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.network_generator.NetworkGenerator.dyn_str">
+<em class="property"><span class="pre">property</span> </em><span class="sig-name descname"><span class="pre">dyn_str</span></span><em class="property"><span class="pre">:</span> <span class="pre">list</span></em><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_generator.NetworkGenerator.dyn_str" title="Permalink to this definition">¶</a></dt>
+<dd></dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.network_generator.NetworkGenerator.generate_cims">
+<span class="sig-name descname"><span class="pre">generate_cims</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">min_val</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">max_val</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_generator.NetworkGenerator.generate_cims" title="Permalink to this definition">¶</a></dt>
+<dd><dl class="simple">
+<dt>For each node, generate the corresponding SetOfCims. The objective is to group the CIMs </dt><dd><p>(actually generated by private method __generate_cim) according to parents possibles states of every node.
+This method must obviously be executed after the graph has been generated.</p>
+</dd>
+</dl>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>min_val</strong> (<em>float</em>) – Minimum value allowed for the coefficients in the CIMs</p></li>
+<li><p><strong>max_val</strong> (<em>float</em>) – Maximum value allowed for the coefficients in the CIMs</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix.state_transition_matrix">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.network_generator.NetworkGenerator.generate_graph">
-<em class="property">property </em><code class="sig-name descname">state_transition_matrix</code><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix.state_transition_matrix" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">generate_graph</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">density</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">fixed</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">bool</span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_generator.NetworkGenerator.generate_graph" title="Permalink to this definition">¶</a></dt>
+<dd><dl class="simple">
+<dt>Generate the edges according to specified density, and then instantiate the NetworkGraph object</dt><dd><p>to represent the network</p>
+</dd>
+</dl>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>density</strong> (<em>float</em>) – Probability of an edge between two nodes to exist</p></li>
+<li><p><strong>fixed</strong> (<em>bool</em>) – Specifies whether the required density is mandatory or it’s just a probability</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.network_generator.NetworkGenerator.graph">
+<em class="property"><span class="pre">property</span> </em><span class="sig-name descname"><span class="pre">graph</span></span><em class="property"><span class="pre">:</span> <span class="pre">PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph</span></em><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_generator.NetworkGenerator.graph" title="Permalink to this definition">¶</a></dt>
+<dd></dd></dl>
+
+<dl class="py property">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.network_generator.NetworkGenerator.variables">
+<em class="property"><span class="pre">property</span> </em><span class="sig-name descname"><span class="pre">variables</span></span><em class="property"><span class="pre">:</span> <span class="pre">list</span></em><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_generator.NetworkGenerator.variables" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </dd></dl>
@@ -167,8 +248,8 @@ The class member <code class="docutils literal notranslate"><span class="pre">_c
 <section id="module-PyCTBN.PyCTBN.structure_graph.network_graph">
 <span id="pyctbn-pyctbn-structure-graph-network-graph-module"></span><h2>PyCTBN.PyCTBN.structure_graph.network_graph module<a class="headerlink" href="#module-PyCTBN.PyCTBN.structure_graph.network_graph" title="Permalink to this headline">¶</a></h2>
 <dl class="py class">
-<dt id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph">
-<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.PyCTBN.structure_graph.network_graph.</code><code class="sig-name descname">NetworkGraph</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">graph_struct</span><span class="p">:</span> <span class="n"><a class="reference internal" href="#PyCTBN.PyCTBN.structure_graph.structure.Structure" title="PyCTBN.PyCTBN.structure_graph.structure.Structure">PyCTBN.PyCTBN.structure_graph.structure.Structure</a></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span> </em><span class="sig-prename descclassname"><span class="pre">PyCTBN.PyCTBN.structure_graph.network_graph.</span></span><span class="sig-name descname"><span class="pre">NetworkGraph</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">graph_struct</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><a class="reference internal" href="#PyCTBN.PyCTBN.structure_graph.structure.Structure" title="PyCTBN.PyCTBN.structure_graph.structure.Structure"><span class="pre">PyCTBN.PyCTBN.structure_graph.structure.Structure</span></a></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></p>
 <p>Abstracts the infos contained in the Structure class in the form of a directed graph.
 Has the task of creating all the necessary filtering and indexing structures for parameters estimation</p>
@@ -201,8 +282,8 @@ from one state to another</p>
 </dd>
 </dl>
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.add_edges">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.add_edges">
-<code class="sig-name descname">add_edges</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">list_of_edges</span><span class="p">:</span> <span class="n">List</span></em><span class="sig-paren">)</span> &#x2192; None<a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.add_edges" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">add_edges</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">list_of_edges</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">List</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">None</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.add_edges" title="Permalink to this definition">¶</a></dt>
 <dd><p>Add the edges to the <code class="docutils literal notranslate"><span class="pre">_graph</span></code> contained in the list <code class="docutils literal notranslate"><span class="pre">list_of_edges</span></code>.</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
@@ -212,8 +293,8 @@ from one state to another</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.add_nodes">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.add_nodes">
-<code class="sig-name descname">add_nodes</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">list_of_nodes</span><span class="p">:</span> <span class="n">List</span></em><span class="sig-paren">)</span> &#x2192; None<a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.add_nodes" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">add_nodes</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">list_of_nodes</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">List</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">None</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.add_nodes" title="Permalink to this definition">¶</a></dt>
 <dd><p>Adds the nodes to the <code class="docutils literal notranslate"><span class="pre">_graph</span></code> contained in the list of nodes <code class="docutils literal notranslate"><span class="pre">list_of_nodes</span></code>.
 Sets all the properties that identify a nodes (index, positional index, cardinality)</p>
 <dl class="field-list simple">
@@ -224,8 +305,8 @@ Sets all the properties that identify a nodes (index, positional index, cardinal
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.build_p_comb_structure_for_a_node">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.build_p_comb_structure_for_a_node">
-<em class="property">static </em><code class="sig-name descname">build_p_comb_structure_for_a_node</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">parents_values</span><span class="p">:</span> <span class="n">List</span></em><span class="sig-paren">)</span> &#x2192; numpy.ndarray<a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.build_p_comb_structure_for_a_node" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">static</span> </em><span class="sig-name descname"><span class="pre">build_p_comb_structure_for_a_node</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">parents_values</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">List</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">numpy.ndarray</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.build_p_comb_structure_for_a_node" title="Permalink to this definition">¶</a></dt>
 <dd><p>Builds the combinatorial structure that contains the combinations of all the values contained in
 <code class="docutils literal notranslate"><span class="pre">parents_values</span></code>.</p>
 <dl class="field-list simple">
@@ -242,8 +323,8 @@ Sets all the properties that identify a nodes (index, positional index, cardinal
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.build_time_columns_filtering_for_a_node">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.build_time_columns_filtering_for_a_node">
-<em class="property">static </em><code class="sig-name descname">build_time_columns_filtering_for_a_node</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">node_indx</span><span class="p">:</span> <span class="n">int</span></em>, <em class="sig-param"><span class="n">p_indxs</span><span class="p">:</span> <span class="n">List</span></em><span class="sig-paren">)</span> &#x2192; numpy.ndarray<a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.build_time_columns_filtering_for_a_node" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">static</span> </em><span class="sig-name descname"><span class="pre">build_time_columns_filtering_for_a_node</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">node_indx</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">int</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">p_indxs</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">List</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">numpy.ndarray</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.build_time_columns_filtering_for_a_node" title="Permalink to this definition">¶</a></dt>
 <dd><p>Builds the necessary structure to filter the desired columns indicated by <code class="docutils literal notranslate"><span class="pre">node_indx</span></code> and <code class="docutils literal notranslate"><span class="pre">p_indxs</span></code>
 in the dataset.
 This structute will be used in the computation of the state res times.
@@ -256,8 +337,8 @@ This structute will be used in the computation of the state res times.
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.build_time_scalar_indexing_structure_for_a_node">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.build_time_scalar_indexing_structure_for_a_node">
-<em class="property">static </em><code class="sig-name descname">build_time_scalar_indexing_structure_for_a_node</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">node_states</span><span class="p">:</span> <span class="n">int</span></em>, <em class="sig-param"><span class="n">parents_vals</span><span class="p">:</span> <span class="n">List</span></em><span class="sig-paren">)</span> &#x2192; numpy.ndarray<a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.build_time_scalar_indexing_structure_for_a_node" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">static</span> </em><span class="sig-name descname"><span class="pre">build_time_scalar_indexing_structure_for_a_node</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">node_states</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">int</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">parents_vals</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">List</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">numpy.ndarray</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.build_time_scalar_indexing_structure_for_a_node" title="Permalink to this definition">¶</a></dt>
 <dd><p>Builds an indexing structure for the computation of state residence times values.</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
@@ -276,8 +357,8 @@ This structute will be used in the computation of the state res times.
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.build_transition_filtering_for_a_node">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.build_transition_filtering_for_a_node">
-<em class="property">static </em><code class="sig-name descname">build_transition_filtering_for_a_node</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">node_indx</span><span class="p">:</span> <span class="n">int</span></em>, <em class="sig-param"><span class="n">p_indxs</span><span class="p">:</span> <span class="n">List</span></em>, <em class="sig-param"><span class="n">nodes_number</span><span class="p">:</span> <span class="n">int</span></em><span class="sig-paren">)</span> &#x2192; numpy.ndarray<a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.build_transition_filtering_for_a_node" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">static</span> </em><span class="sig-name descname"><span class="pre">build_transition_filtering_for_a_node</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">node_indx</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">int</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">p_indxs</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">List</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">nodes_number</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">int</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">numpy.ndarray</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.build_transition_filtering_for_a_node" title="Permalink to this definition">¶</a></dt>
 <dd><p>Builds the necessary structure to filter the desired columns indicated by <code class="docutils literal notranslate"><span class="pre">node_indx</span></code> and <code class="docutils literal notranslate"><span class="pre">p_indxs</span></code>
 in the dataset.
 This structure will be used in the computation of the state transitions values.
@@ -292,8 +373,8 @@ This structure will be used in the computation of the state transitions values.
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.build_transition_scalar_indexing_structure_for_a_node">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.build_transition_scalar_indexing_structure_for_a_node">
-<em class="property">static </em><code class="sig-name descname">build_transition_scalar_indexing_structure_for_a_node</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">node_states_number</span><span class="p">:</span> <span class="n">int</span></em>, <em class="sig-param"><span class="n">parents_vals</span><span class="p">:</span> <span class="n">List</span></em><span class="sig-paren">)</span> &#x2192; numpy.ndarray<a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.build_transition_scalar_indexing_structure_for_a_node" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">static</span> </em><span class="sig-name descname"><span class="pre">build_transition_scalar_indexing_structure_for_a_node</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">node_states_number</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">int</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">parents_vals</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">List</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">numpy.ndarray</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.build_transition_scalar_indexing_structure_for_a_node" title="Permalink to this definition">¶</a></dt>
 <dd><p>Builds an indexing structure for the computation of state transitions values.</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
@@ -312,19 +393,19 @@ This structure will be used in the computation of the state transitions values.
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.clear_indexing_filtering_structures">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.clear_indexing_filtering_structures">
-<code class="sig-name descname">clear_indexing_filtering_structures</code><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; None<a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.clear_indexing_filtering_structures" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">clear_indexing_filtering_structures</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; <span class="pre">None</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.clear_indexing_filtering_structures" title="Permalink to this definition">¶</a></dt>
 <dd><p>Initialize all the filtering/indexing structures.</p>
 </dd></dl>
 
-<dl class="py method">
+<dl class="py property">
-<dt id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.edges">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.edges">
-<em class="property">property </em><code class="sig-name descname">edges</code><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.edges" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span> </em><span class="sig-name descname"><span class="pre">edges</span></span><em class="property"><span class="pre">:</span> <span class="pre">List</span></em><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.edges" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.fast_init">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.fast_init">
-<code class="sig-name descname">fast_init</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">node_id</span><span class="p">:</span> <span class="n">str</span></em><span class="sig-paren">)</span> &#x2192; None<a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.fast_init" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">fast_init</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">node_id</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">str</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">None</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.fast_init" title="Permalink to this definition">¶</a></dt>
 <dd><p>Initializes all the necessary structures for parameters estimation of the node identified by the label
 node_id</p>
 <dl class="field-list simple">
@@ -335,13 +416,13 @@ node_id</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.get_node_indx">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.get_node_indx">
-<code class="sig-name descname">get_node_indx</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">node_id</span></em><span class="sig-paren">)</span> &#x2192; int<a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.get_node_indx" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">get_node_indx</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">node_id</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">int</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.get_node_indx" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.get_ordered_by_indx_set_of_parents">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.get_ordered_by_indx_set_of_parents">
-<code class="sig-name descname">get_ordered_by_indx_set_of_parents</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">node</span><span class="p">:</span> <span class="n">str</span></em><span class="sig-paren">)</span> &#x2192; Tuple<a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.get_ordered_by_indx_set_of_parents" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">get_ordered_by_indx_set_of_parents</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">node</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">str</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">Tuple</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.get_ordered_by_indx_set_of_parents" title="Permalink to this definition">¶</a></dt>
 <dd><p>Builds the aggregated structure that holds all the infos relative to the parent set of the node, namely
 (parents_labels, parents_indexes, parents_cardinalities).</p>
 <dl class="field-list simple">
@@ -358,8 +439,8 @@ node_id</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.get_parents_by_id">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.get_parents_by_id">
-<code class="sig-name descname">get_parents_by_id</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">node_id</span></em><span class="sig-paren">)</span> &#x2192; List<a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.get_parents_by_id" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">get_parents_by_id</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">node_id</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">List</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.get_parents_by_id" title="Permalink to this definition">¶</a></dt>
 <dd><p>Returns a list of labels of the parents of the node <code class="docutils literal notranslate"><span class="pre">node_id</span></code></p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
@@ -375,18 +456,18 @@ node_id</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.get_positional_node_indx">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.get_positional_node_indx">
-<code class="sig-name descname">get_positional_node_indx</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">node_id</span></em><span class="sig-paren">)</span> &#x2192; int<a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.get_positional_node_indx" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">get_positional_node_indx</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">node_id</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">int</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.get_positional_node_indx" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.get_states_number">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.get_states_number">
-<code class="sig-name descname">get_states_number</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">node_id</span></em><span class="sig-paren">)</span> &#x2192; int<a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.get_states_number" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">get_states_number</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">node_id</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">int</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.get_states_number" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.has_edge">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.has_edge">
-<code class="sig-name descname">has_edge</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">edge</span><span class="p">:</span> <span class="n">tuple</span></em><span class="sig-paren">)</span> &#x2192; bool<a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.has_edge" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">has_edge</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">edge</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">tuple</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">bool</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.has_edge" title="Permalink to this definition">¶</a></dt>
 <dd><p>Check if the graph contains a specific edge</p>
 <dl class="simple">
 <dt>Parameters:</dt><dd><p>edge: a tuple that rappresents the edge</p>
@@ -396,29 +477,29 @@ node_id</p>
 </dl>
 </dd></dl>
 
-<dl class="py method">
+<dl class="py property">
-<dt id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.nodes">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.nodes">
-<em class="property">property </em><code class="sig-name descname">nodes</code><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.nodes" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span> </em><span class="sig-name descname"><span class="pre">nodes</span></span><em class="property"><span class="pre">:</span> <span class="pre">List</span></em><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.nodes" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
-<dl class="py method">
+<dl class="py property">
-<dt id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.nodes_indexes">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.nodes_indexes">
-<em class="property">property </em><code class="sig-name descname">nodes_indexes</code><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.nodes_indexes" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span> </em><span class="sig-name descname"><span class="pre">nodes_indexes</span></span><em class="property"><span class="pre">:</span> <span class="pre">numpy.ndarray</span></em><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.nodes_indexes" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
-<dl class="py method">
+<dl class="py property">
-<dt id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.nodes_values">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.nodes_values">
-<em class="property">property </em><code class="sig-name descname">nodes_values</code><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.nodes_values" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span> </em><span class="sig-name descname"><span class="pre">nodes_values</span></span><em class="property"><span class="pre">:</span> <span class="pre">numpy.ndarray</span></em><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.nodes_values" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
-<dl class="py method">
+<dl class="py property">
-<dt id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.p_combs">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.p_combs">
-<em class="property">property </em><code class="sig-name descname">p_combs</code><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.p_combs" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span> </em><span class="sig-name descname"><span class="pre">p_combs</span></span><em class="property"><span class="pre">:</span> <span class="pre">numpy.ndarray</span></em><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.p_combs" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.remove_edges">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.remove_edges">
-<code class="sig-name descname">remove_edges</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">list_of_edges</span><span class="p">:</span> <span class="n">List</span></em><span class="sig-paren">)</span> &#x2192; None<a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.remove_edges" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">remove_edges</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">list_of_edges</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">List</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">None</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.remove_edges" title="Permalink to this definition">¶</a></dt>
 <dd><p>Remove the edges to the graph contained in the list list_of_edges.</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
@@ -428,30 +509,30 @@ node_id</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.remove_node">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.remove_node">
-<code class="sig-name descname">remove_node</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">node_id</span><span class="p">:</span> <span class="n">str</span></em><span class="sig-paren">)</span> &#x2192; None<a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.remove_node" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">remove_node</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">node_id</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">str</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">None</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.remove_node" title="Permalink to this definition">¶</a></dt>
 <dd><p>Remove the node <code class="docutils literal notranslate"><span class="pre">node_id</span></code> from all the class members.
 Initialize all the filtering/indexing structures.</p>
 </dd></dl>
 
-<dl class="py method">
+<dl class="py property">
-<dt id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.time_filtering">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.time_filtering">
-<em class="property">property </em><code class="sig-name descname">time_filtering</code><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.time_filtering" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span> </em><span class="sig-name descname"><span class="pre">time_filtering</span></span><em class="property"><span class="pre">:</span> <span class="pre">numpy.ndarray</span></em><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.time_filtering" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
-<dl class="py method">
+<dl class="py property">
-<dt id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.time_scalar_indexing_strucure">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.time_scalar_indexing_strucure">
-<em class="property">property </em><code class="sig-name descname">time_scalar_indexing_strucure</code><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.time_scalar_indexing_strucure" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span> </em><span class="sig-name descname"><span class="pre">time_scalar_indexing_strucure</span></span><em class="property"><span class="pre">:</span> <span class="pre">numpy.ndarray</span></em><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.time_scalar_indexing_strucure" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
-<dl class="py method">
+<dl class="py property">
-<dt id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.transition_filtering">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.transition_filtering">
-<em class="property">property </em><code class="sig-name descname">transition_filtering</code><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.transition_filtering" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span> </em><span class="sig-name descname"><span class="pre">transition_filtering</span></span><em class="property"><span class="pre">:</span> <span class="pre">numpy.ndarray</span></em><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.transition_filtering" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
-<dl class="py method">
+<dl class="py property">
-<dt id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.transition_scalar_indexing_structure">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.transition_scalar_indexing_structure">
-<em class="property">property </em><code class="sig-name descname">transition_scalar_indexing_structure</code><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.transition_scalar_indexing_structure" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span> </em><span class="sig-name descname"><span class="pre">transition_scalar_indexing_structure</span></span><em class="property"><span class="pre">:</span> <span class="pre">numpy.ndarray</span></em><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.transition_scalar_indexing_structure" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </dd></dl>
@@ -460,8 +541,8 @@ Initialize all the filtering/indexing structures.</p>
 <section id="module-PyCTBN.PyCTBN.structure_graph.sample_path">
 <span id="pyctbn-pyctbn-structure-graph-sample-path-module"></span><h2>PyCTBN.PyCTBN.structure_graph.sample_path module<a class="headerlink" href="#module-PyCTBN.PyCTBN.structure_graph.sample_path" title="Permalink to this headline">¶</a></h2>
 <dl class="py class">
-<dt id="PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath">
-<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.PyCTBN.structure_graph.sample_path.</code><code class="sig-name descname">SamplePath</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">importer</span><span class="p">:</span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter" title="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter">PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter</a></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span> </em><span class="sig-prename descclassname"><span class="pre">PyCTBN.PyCTBN.structure_graph.sample_path.</span></span><span class="sig-name descname"><span class="pre">SamplePath</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">importer</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter" title="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter"><span class="pre">PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter</span></a></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></p>
 <p>Aggregates all the informations about the trajectories, the real structure of the sampled net and variables
 cardinalites. Has the task of creating the objects <code class="docutils literal notranslate"><span class="pre">Trajectory</span></code> and <code class="docutils literal notranslate"><span class="pre">Structure</span></code> that will
@@ -481,41 +562,41 @@ contain the mentioned data.</p>
 </dd>
 </dl>
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath.build_structure">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath.build_structure">
-<code class="sig-name descname">build_structure</code><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; None<a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath.build_structure" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">build_structure</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; <span class="pre">None</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath.build_structure" title="Permalink to this definition">¶</a></dt>
 <dd><p>Builds the <code class="docutils literal notranslate"><span class="pre">Structure</span></code> object that aggregates all the infos about the net.</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath.build_trajectories">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath.build_trajectories">
-<code class="sig-name descname">build_trajectories</code><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; None<a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath.build_trajectories" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">build_trajectories</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; <span class="pre">None</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath.build_trajectories" title="Permalink to this definition">¶</a></dt>
 <dd><p>Builds the Trajectory object that will contain all the trajectories.
 Clears all the unused dataframes in <code class="docutils literal notranslate"><span class="pre">_importer</span></code> Object</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath.clear_memory">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath.clear_memory">
-<code class="sig-name descname">clear_memory</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath.clear_memory" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">clear_memory</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath.clear_memory" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
-<dl class="py method">
+<dl class="py property">
-<dt id="PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath.has_prior_net_structure">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath.has_prior_net_structure">
-<em class="property">property </em><code class="sig-name descname">has_prior_net_structure</code><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath.has_prior_net_structure" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span> </em><span class="sig-name descname"><span class="pre">has_prior_net_structure</span></span><em class="property"><span class="pre">:</span> <span class="pre">bool</span></em><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath.has_prior_net_structure" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
-<dl class="py method">
+<dl class="py property">
-<dt id="PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath.structure">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath.structure">
-<em class="property">property </em><code class="sig-name descname">structure</code><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath.structure" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span> </em><span class="sig-name descname"><span class="pre">structure</span></span><em class="property"><span class="pre">:</span> <span class="pre">PyCTBN.PyCTBN.structure_graph.structure.Structure</span></em><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath.structure" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
-<dl class="py method">
+<dl class="py property">
-<dt id="PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath.total_variables_count">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath.total_variables_count">
-<em class="property">property </em><code class="sig-name descname">total_variables_count</code><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath.total_variables_count" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span> </em><span class="sig-name descname"><span class="pre">total_variables_count</span></span><em class="property"><span class="pre">:</span> <span class="pre">int</span></em><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath.total_variables_count" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
-<dl class="py method">
+<dl class="py property">
-<dt id="PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath.trajectories">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath.trajectories">
-<em class="property">property </em><code class="sig-name descname">trajectories</code><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath.trajectories" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span> </em><span class="sig-name descname"><span class="pre">trajectories</span></span><em class="property"><span class="pre">:</span> <span class="pre">PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory</span></em><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath.trajectories" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </dd></dl>
@@ -524,8 +605,8 @@ Clears all the unused dataframes in <code class="docutils literal notranslate"><
 <section id="module-PyCTBN.PyCTBN.structure_graph.set_of_cims">
 <span id="pyctbn-pyctbn-structure-graph-set-of-cims-module"></span><h2>PyCTBN.PyCTBN.structure_graph.set_of_cims module<a class="headerlink" href="#module-PyCTBN.PyCTBN.structure_graph.set_of_cims" title="Permalink to this headline">¶</a></h2>
 <dl class="py class">
-<dt id="PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims">
-<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.PyCTBN.structure_graph.set_of_cims.</code><code class="sig-name descname">SetOfCims</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">node_id</span><span class="p">:</span> <span class="n">str</span></em>, <em class="sig-param"><span class="n">parents_states_number</span><span class="p">:</span> <span class="n">List</span></em>, <em class="sig-param"><span class="n">node_states_number</span><span class="p">:</span> <span class="n">int</span></em>, <em class="sig-param"><span class="n">p_combs</span><span class="p">:</span> <span class="n">numpy.ndarray</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span> </em><span class="sig-prename descclassname"><span class="pre">PyCTBN.PyCTBN.structure_graph.set_of_cims.</span></span><span class="sig-name descname"><span class="pre">SetOfCims</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">node_id</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">str</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">parents_states_number</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">List</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">node_states_number</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">int</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">p_combs</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">numpy.ndarray</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cims</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">Optional</span><span class="p"><span class="pre">[</span></span><span class="pre">numpy.ndarray</span><span class="p"><span class="pre">]</span></span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></p>
 <p>Aggregates all the CIMS of the node identified by the label _node_id.</p>
 <dl class="field-list simple">
@@ -547,14 +628,14 @@ Clears all the unused dataframes in <code class="docutils literal notranslate"><
 <dd class="field-even"><p>the cims of the node</p>
 </dd>
 </dl>
-<dl class="py method">
+<dl class="py property">
-<dt id="PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims.actual_cims">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims.actual_cims">
-<em class="property">property </em><code class="sig-name descname">actual_cims</code><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims.actual_cims" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span> </em><span class="sig-name descname"><span class="pre">actual_cims</span></span><em class="property"><span class="pre">:</span> <span class="pre">numpy.ndarray</span></em><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims.actual_cims" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims.build_cims">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims.build_cims">
-<code class="sig-name descname">build_cims</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">state_res_times</span><span class="p">:</span> <span class="n">numpy.ndarray</span></em>, <em class="sig-param"><span class="n">transition_matrices</span><span class="p">:</span> <span class="n">numpy.ndarray</span></em><span class="sig-paren">)</span> &#x2192; None<a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims.build_cims" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">build_cims</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">state_res_times</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">numpy.ndarray</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">transition_matrices</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">numpy.ndarray</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">None</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims.build_cims" title="Permalink to this definition">¶</a></dt>
 <dd><p>Build the <code class="docutils literal notranslate"><span class="pre">ConditionalIntensityMatrix</span></code> objects given the state residence times and transitions matrices.
 Compute the cim coefficients.The class member <code class="docutils literal notranslate"><span class="pre">_actual_cims</span></code> will contain the computed cims.</p>
 <dl class="field-list simple">
@@ -568,14 +649,14 @@ Compute the cim coefficients.The class member <code class="docutils literal notr
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims.build_times_and_transitions_structures">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims.build_times_and_transitions_structures">
-<code class="sig-name descname">build_times_and_transitions_structures</code><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; None<a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims.build_times_and_transitions_structures" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">build_times_and_transitions_structures</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; <span class="pre">None</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims.build_times_and_transitions_structures" title="Permalink to this definition">¶</a></dt>
 <dd><p>Initializes at the correct dimensions the state residence times matrix and the state transition matrices.</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims.filter_cims_with_mask">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims.filter_cims_with_mask">
-<code class="sig-name descname">filter_cims_with_mask</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">mask_arr</span><span class="p">:</span> <span class="n">numpy.ndarray</span></em>, <em class="sig-param"><span class="n">comb</span><span class="p">:</span> <span class="n">List</span></em><span class="sig-paren">)</span> &#x2192; numpy.ndarray<a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims.filter_cims_with_mask" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">filter_cims_with_mask</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">mask_arr</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">numpy.ndarray</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">comb</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">List</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">numpy.ndarray</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims.filter_cims_with_mask" title="Permalink to this definition">¶</a></dt>
 <dd><p>Filter the cims contained in the array <code class="docutils literal notranslate"><span class="pre">_actual_cims</span></code> given the boolean mask <code class="docutils literal notranslate"><span class="pre">mask_arr</span></code> and the index
 <code class="docutils literal notranslate"><span class="pre">comb</span></code>.</p>
 <dl class="field-list simple">
@@ -595,13 +676,13 @@ Compute the cim coefficients.The class member <code class="docutils literal notr
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims.get_cims_number">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims.get_cims_number">
-<code class="sig-name descname">get_cims_number</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims.get_cims_number" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">get_cims_number</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims.get_cims_number" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
-<dl class="py method">
+<dl class="py property">
-<dt id="PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims.p_combs">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims.p_combs">
-<em class="property">property </em><code class="sig-name descname">p_combs</code><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims.p_combs" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span> </em><span class="sig-name descname"><span class="pre">p_combs</span></span><em class="property"><span class="pre">:</span> <span class="pre">numpy.ndarray</span></em><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims.p_combs" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </dd></dl>
@@ -610,8 +691,8 @@ Compute the cim coefficients.The class member <code class="docutils literal notr
 <section id="module-PyCTBN.PyCTBN.structure_graph.structure">
 <span id="pyctbn-pyctbn-structure-graph-structure-module"></span><h2>PyCTBN.PyCTBN.structure_graph.structure module<a class="headerlink" href="#module-PyCTBN.PyCTBN.structure_graph.structure" title="Permalink to this headline">¶</a></h2>
 <dl class="py class">
-<dt id="PyCTBN.PyCTBN.structure_graph.structure.Structure">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.structure.Structure">
-<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.PyCTBN.structure_graph.structure.</code><code class="sig-name descname">Structure</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">nodes_labels_list</span><span class="p">:</span> <span class="n">List</span></em>, <em class="sig-param"><span class="n">nodes_indexes_arr</span><span class="p">:</span> <span class="n">numpy.ndarray</span></em>, <em class="sig-param"><span class="n">nodes_vals_arr</span><span class="p">:</span> <span class="n">numpy.ndarray</span></em>, <em class="sig-param"><span class="n">edges_list</span><span class="p">:</span> <span class="n">List</span></em>, <em class="sig-param"><span class="n">total_variables_number</span><span class="p">:</span> <span class="n">int</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.structure.Structure" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span> </em><span class="sig-prename descclassname"><span class="pre">PyCTBN.PyCTBN.structure_graph.structure.</span></span><span class="sig-name descname"><span class="pre">Structure</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">nodes_labels_list</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">List</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">nodes_indexes_arr</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">numpy.ndarray</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">nodes_vals_arr</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">numpy.ndarray</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">edges_list</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">List</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">total_variables_number</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">int</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.structure.Structure" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></p>
 <p>Contains all the infos about the network structure(nodes labels, nodes caridinalites, edges, indexes)</p>
 <dl class="field-list simple">
@@ -626,28 +707,28 @@ Compute the cim coefficients.The class member <code class="docutils literal notr
 </dd>
 </dl>
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.structure_graph.structure.Structure.add_edge">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.structure.Structure.add_edge">
-<code class="sig-name descname">add_edge</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">edge</span><span class="p">:</span> <span class="n">tuple</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.structure.Structure.add_edge" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">add_edge</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">edge</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">tuple</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.structure.Structure.add_edge" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.structure_graph.structure.Structure.clean_structure_edges">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.structure.Structure.clean_structure_edges">
-<code class="sig-name descname">clean_structure_edges</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.structure.Structure.clean_structure_edges" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">clean_structure_edges</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.structure.Structure.clean_structure_edges" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.structure_graph.structure.Structure.contains_edge">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.structure.Structure.contains_edge">
-<code class="sig-name descname">contains_edge</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">edge</span><span class="p">:</span> <span class="n">tuple</span></em><span class="sig-paren">)</span> &#x2192; bool<a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.structure.Structure.contains_edge" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">contains_edge</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">edge</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">tuple</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">bool</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.structure.Structure.contains_edge" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
-<dl class="py method">
+<dl class="py property">
-<dt id="PyCTBN.PyCTBN.structure_graph.structure.Structure.edges">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.structure.Structure.edges">
-<em class="property">property </em><code class="sig-name descname">edges</code><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.structure.Structure.edges" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span> </em><span class="sig-name descname"><span class="pre">edges</span></span><em class="property"><span class="pre">:</span> <span class="pre">List</span></em><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.structure.Structure.edges" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.structure_graph.structure.Structure.get_node_id">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.structure.Structure.get_node_id">
-<code class="sig-name descname">get_node_id</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">node_indx</span><span class="p">:</span> <span class="n">int</span></em><span class="sig-paren">)</span> &#x2192; str<a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.structure.Structure.get_node_id" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">get_node_id</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">node_indx</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">int</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">str</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.structure.Structure.get_node_id" title="Permalink to this definition">¶</a></dt>
 <dd><p>Given the <code class="docutils literal notranslate"><span class="pre">node_index</span></code> returns the node label.</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
@@ -663,8 +744,8 @@ Compute the cim coefficients.The class member <code class="docutils literal notr
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.structure_graph.structure.Structure.get_node_indx">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.structure.Structure.get_node_indx">
-<code class="sig-name descname">get_node_indx</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">node_id</span><span class="p">:</span> <span class="n">str</span></em><span class="sig-paren">)</span> &#x2192; int<a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.structure.Structure.get_node_indx" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">get_node_indx</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">node_id</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">str</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">int</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.structure.Structure.get_node_indx" title="Permalink to this definition">¶</a></dt>
 <dd><p>Given the <code class="docutils literal notranslate"><span class="pre">node_index</span></code> returns the node label.</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
@@ -680,13 +761,13 @@ Compute the cim coefficients.The class member <code class="docutils literal notr
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.structure_graph.structure.Structure.get_positional_node_indx">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.structure.Structure.get_positional_node_indx">
-<code class="sig-name descname">get_positional_node_indx</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">node_id</span><span class="p">:</span> <span class="n">str</span></em><span class="sig-paren">)</span> &#x2192; int<a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.structure.Structure.get_positional_node_indx" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">get_positional_node_indx</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">node_id</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">str</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">int</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.structure.Structure.get_positional_node_indx" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.structure_graph.structure.Structure.get_states_number">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.structure.Structure.get_states_number">
-<code class="sig-name descname">get_states_number</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">node</span><span class="p">:</span> <span class="n">str</span></em><span class="sig-paren">)</span> &#x2192; int<a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.structure.Structure.get_states_number" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">get_states_number</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">node</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">str</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">int</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.structure.Structure.get_states_number" title="Permalink to this definition">¶</a></dt>
 <dd><p>Given the node label <code class="docutils literal notranslate"><span class="pre">node</span></code> returns the cardinality of the node.</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
@@ -701,36 +782,36 @@ Compute the cim coefficients.The class member <code class="docutils literal notr
 </dl>
 </dd></dl>
 
-<dl class="py method">
+<dl class="py property">
-<dt id="PyCTBN.PyCTBN.structure_graph.structure.Structure.nodes_indexes">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.structure.Structure.nodes_indexes">
-<em class="property">property </em><code class="sig-name descname">nodes_indexes</code><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.structure.Structure.nodes_indexes" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span> </em><span class="sig-name descname"><span class="pre">nodes_indexes</span></span><em class="property"><span class="pre">:</span> <span class="pre">numpy.ndarray</span></em><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.structure.Structure.nodes_indexes" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
-<dl class="py method">
+<dl class="py property">
-<dt id="PyCTBN.PyCTBN.structure_graph.structure.Structure.nodes_labels">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.structure.Structure.nodes_labels">
-<em class="property">property </em><code class="sig-name descname">nodes_labels</code><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.structure.Structure.nodes_labels" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span> </em><span class="sig-name descname"><span class="pre">nodes_labels</span></span><em class="property"><span class="pre">:</span> <span class="pre">List</span></em><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.structure.Structure.nodes_labels" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
-<dl class="py method">
+<dl class="py property">
-<dt id="PyCTBN.PyCTBN.structure_graph.structure.Structure.nodes_values">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.structure.Structure.nodes_values">
-<em class="property">property </em><code class="sig-name descname">nodes_values</code><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.structure.Structure.nodes_values" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span> </em><span class="sig-name descname"><span class="pre">nodes_values</span></span><em class="property"><span class="pre">:</span> <span class="pre">numpy.ndarray</span></em><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.structure.Structure.nodes_values" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.structure_graph.structure.Structure.remove_edge">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.structure.Structure.remove_edge">
-<code class="sig-name descname">remove_edge</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">edge</span><span class="p">:</span> <span class="n">tuple</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.structure.Structure.remove_edge" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">remove_edge</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">edge</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">tuple</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.structure.Structure.remove_edge" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.structure_graph.structure.Structure.remove_node">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.structure.Structure.remove_node">
-<code class="sig-name descname">remove_node</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">node_id</span><span class="p">:</span> <span class="n">str</span></em><span class="sig-paren">)</span> &#x2192; None<a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.structure.Structure.remove_node" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">remove_node</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">node_id</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">str</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">None</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.structure.Structure.remove_node" title="Permalink to this definition">¶</a></dt>
 <dd><p>Remove the node <code class="docutils literal notranslate"><span class="pre">node_id</span></code> from all the class members.
 The class member <code class="docutils literal notranslate"><span class="pre">_total_variables_number</span></code> since it refers to the total number of variables in the dataset.</p>
 </dd></dl>
 
-<dl class="py method">
+<dl class="py property">
-<dt id="PyCTBN.PyCTBN.structure_graph.structure.Structure.total_variables_number">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.structure.Structure.total_variables_number">
-<em class="property">property </em><code class="sig-name descname">total_variables_number</code><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.structure.Structure.total_variables_number" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span> </em><span class="sig-name descname"><span class="pre">total_variables_number</span></span><em class="property"><span class="pre">:</span> <span class="pre">int</span></em><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.structure.Structure.total_variables_number" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </dd></dl>
@@ -739,8 +820,8 @@ The class member <code class="docutils literal notranslate"><span class="pre">_t
 <section id="module-PyCTBN.PyCTBN.structure_graph.trajectory">
 <span id="pyctbn-pyctbn-structure-graph-trajectory-module"></span><h2>PyCTBN.PyCTBN.structure_graph.trajectory module<a class="headerlink" href="#module-PyCTBN.PyCTBN.structure_graph.trajectory" title="Permalink to this headline">¶</a></h2>
 <dl class="py class">
-<dt id="PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory">
-<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.PyCTBN.structure_graph.trajectory.</code><code class="sig-name descname">Trajectory</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">list_of_columns</span><span class="p">:</span> <span class="n">List</span></em>, <em class="sig-param"><span class="n">original_cols_number</span><span class="p">:</span> <span class="n">int</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span> </em><span class="sig-prename descclassname"><span class="pre">PyCTBN.PyCTBN.structure_graph.trajectory.</span></span><span class="sig-name descname"><span class="pre">Trajectory</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">list_of_columns</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">List</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">original_cols_number</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">int</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></p>
 <p>Abstracts the infos about a complete set of trajectories, represented as a numpy array of doubles
 (the time deltas) and a numpy matrix of ints (the changes of states).</p>
@@ -758,30 +839,32 @@ The class member <code class="docutils literal notranslate"><span class="pre">_t
 <dd class="field-odd"><p>the array containing the time deltas</p>
 </dd>
 </dl>
-<dl class="py method">
+<dl class="py property">
-<dt id="PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory.complete_trajectory">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory.complete_trajectory">
-<em class="property">property </em><code class="sig-name descname">complete_trajectory</code><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory.complete_trajectory" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span> </em><span class="sig-name descname"><span class="pre">complete_trajectory</span></span><em class="property"><span class="pre">:</span> <span class="pre">numpy.ndarray</span></em><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory.complete_trajectory" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory.size">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory.size">
-<code class="sig-name descname">size</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory.size" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">size</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory.size" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
-<dl class="py method">
+<dl class="py property">
-<dt id="PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory.times">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory.times">
-<em class="property">property </em><code class="sig-name descname">times</code><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory.times" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span> </em><span class="sig-name descname"><span class="pre">times</span></span><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory.times" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
-<dl class="py method">
+<dl class="py property">
-<dt id="PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory.trajectory">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory.trajectory">
-<em class="property">property </em><code class="sig-name descname">trajectory</code><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory.trajectory" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span> </em><span class="sig-name descname"><span class="pre">trajectory</span></span><em class="property"><span class="pre">:</span> <span class="pre">numpy.ndarray</span></em><a class="headerlink" href="#PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory.trajectory" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </dd></dl>
 
+
 </section>
 <section id="module-PyCTBN.PyCTBN.structure_graph">
+
 <span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-PyCTBN.PyCTBN.structure_graph" title="Permalink to this headline">¶</a></h2>
 </section>
 </section>
@@ -823,6 +906,9 @@ The class member <code class="docutils literal notranslate"><span class="pre">_t
             FILE_SUFFIX:'.html',
             HAS_SOURCE:  true
         };
+    </script>
+    <script type="text/javascript" src="_static/documentation_options.js">
+
     </script>
     <script type="text/javascript" src="_static/jquery.js">
 
@@ -833,9 +919,6 @@ The class member <code class="docutils literal notranslate"><span class="pre">_t
     <script type="text/javascript" src="_static/doctools.js">
 
     </script>
-    <script type="text/javascript" src="_static/language_data.js">
-
-    </script>
 
   
 

docs/PyCTBN.PyCTBN.utility.html

@@ -19,6 +19,10 @@
     <link rel="stylesheet" href="_static/css/pdj.css" type="text/css" />
 
   
+    <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
+  
+    <link rel="stylesheet" href="_static/css/pdj.css" type="text/css" />
+  
 
   
 
@@ -119,12 +123,14 @@
 <h1>PyCTBN.PyCTBN.utility package<a class="headerlink" href="#pyctbn-pyctbn-utility-package" title="Permalink to this headline">¶</a></h1>
 <section id="submodules">
 <h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this headline">¶</a></h2>
+
 </section>
 <section id="module-PyCTBN.PyCTBN.utility.abstract_importer">
+
 <span id="pyctbn-pyctbn-utility-abstract-importer-module"></span><h2>PyCTBN.PyCTBN.utility.abstract_importer module<a class="headerlink" href="#module-PyCTBN.PyCTBN.utility.abstract_importer" title="Permalink to this headline">¶</a></h2>
 <dl class="py class">
-<dt id="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter">
-<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.PyCTBN.utility.abstract_importer.</code><code class="sig-name descname">AbstractImporter</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">file_path</span><span class="p">:</span> <span class="n">str</span> <span class="o">=</span> <span class="default_value">None</span></em>, <em class="sig-param"><span class="n">trajectory_list</span><span class="p">:</span> <span class="n">Union<span class="p">[</span>pandas.core.frame.DataFrame<span class="p">, </span>numpy.ndarray<span class="p">]</span></span> <span class="o">=</span> <span class="default_value">None</span></em>, <em class="sig-param"><span class="n">variables</span><span class="p">:</span> <span class="n">pandas.core.frame.DataFrame</span> <span class="o">=</span> <span class="default_value">None</span></em>, <em class="sig-param"><span class="n">prior_net_structure</span><span class="p">:</span> <span class="n">pandas.core.frame.DataFrame</span> <span class="o">=</span> <span class="default_value">None</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span> </em><span class="sig-prename descclassname"><span class="pre">PyCTBN.PyCTBN.utility.abstract_importer.</span></span><span class="sig-name descname"><span class="pre">AbstractImporter</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">file_path</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">Optional</span><span class="p"><span class="pre">[</span></span><span class="pre">str</span><span class="p"><span class="pre">]</span></span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">trajectory_list</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">Optional</span><span class="p"><span class="pre">[</span></span><span class="pre">Union</span><span class="p"><span class="pre">[</span></span><span class="pre">pandas.core.frame.DataFrame</span><span class="p"><span class="pre">,</span> </span><span class="pre">numpy.ndarray</span><span class="p"><span class="pre">]</span></span><span class="p"><span class="pre">]</span></span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">variables</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">Optional</span><span class="p"><span class="pre">[</span></span><span class="pre">pandas.core.frame.DataFrame</span><span class="p"><span class="pre">]</span></span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">prior_net_structure</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">Optional</span><span class="p"><span class="pre">[</span></span><span class="pre">pandas.core.frame.DataFrame</span><span class="p"><span class="pre">]</span></span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">abc.ABC</span></code></p>
 <p>Abstract class that exposes all the necessary methods to process the trajectories and the net structure.</p>
 <dl class="field-list simple">
@@ -155,8 +161,8 @@ See the tutorial on how to construct a correct <code class="docutils literal not
 <p>See :class:<code class="docutils literal notranslate"><span class="pre">JsonImporter</span></code> for an example implementation</p>
 </div>
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.build_list_of_samples_array">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.build_list_of_samples_array">
-<code class="sig-name descname">build_list_of_samples_array</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">concatenated_sample</span><span class="p">:</span> <span class="n">pandas.core.frame.DataFrame</span></em><span class="sig-paren">)</span> &#x2192; List<a class="headerlink" href="#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.build_list_of_samples_array" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">build_list_of_samples_array</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">concatenated_sample</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">pandas.core.frame.DataFrame</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">List</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.build_list_of_samples_array" title="Permalink to this definition">¶</a></dt>
 <dd><p>Builds a List containing the the delta times numpy array, and the complete transitions matrix</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
@@ -173,8 +179,8 @@ and converted</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.build_sorter">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.build_sorter">
-<em class="property">abstract </em><code class="sig-name descname">build_sorter</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">trajecory_header</span><span class="p">:</span> <span class="n">object</span></em><span class="sig-paren">)</span> &#x2192; List<a class="headerlink" href="#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.build_sorter" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">abstract</span> </em><span class="sig-name descname"><span class="pre">build_sorter</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">trajecory_header</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">object</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">List</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.build_sorter" title="Permalink to this definition">¶</a></dt>
 <dd><p>Initializes the <code class="docutils literal notranslate"><span class="pre">_sorter</span></code> class member from a trajectory dataframe, exctracting the header of the frame
 and keeping ONLY the variables symbolic labels, cutting out the time label in the header.</p>
 <dl class="field-list simple">
@@ -191,14 +197,14 @@ and keeping ONLY the variables symbolic labels, cutting out the time label in th
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.clear_concatenated_frame">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.clear_concatenated_frame">
-<code class="sig-name descname">clear_concatenated_frame</code><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; None<a class="headerlink" href="#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.clear_concatenated_frame" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">clear_concatenated_frame</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; <span class="pre">None</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.clear_concatenated_frame" title="Permalink to this definition">¶</a></dt>
 <dd><p>Removes all values in the dataframe concatenated_samples.</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.compute_row_delta_in_all_samples_frames">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.compute_row_delta_in_all_samples_frames">
-<code class="sig-name descname">compute_row_delta_in_all_samples_frames</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">df_samples_list</span><span class="p">:</span> <span class="n">List</span></em><span class="sig-paren">)</span> &#x2192; None<a class="headerlink" href="#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.compute_row_delta_in_all_samples_frames" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">compute_row_delta_in_all_samples_frames</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">df_samples_list</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">List</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">None</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.compute_row_delta_in_all_samples_frames" title="Permalink to this definition">¶</a></dt>
 <dd><p>Calls the method <code class="docutils literal notranslate"><span class="pre">compute_row_delta_sigle_samples_frame</span></code> on every dataframe present in the list
 <code class="docutils literal notranslate"><span class="pre">df_samples_list</span></code>.
 Concatenates the result in the dataframe <code class="docutils literal notranslate"><span class="pre">concatanated_samples</span></code></p>
@@ -221,8 +227,8 @@ and merged trajectories</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.compute_row_delta_sigle_samples_frame">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.compute_row_delta_sigle_samples_frame">
-<code class="sig-name descname">compute_row_delta_sigle_samples_frame</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">sample_frame</span><span class="p">:</span> <span class="n">pandas.core.frame.DataFrame</span></em>, <em class="sig-param"><span class="n">columns_header</span><span class="p">:</span> <span class="n">List</span></em>, <em class="sig-param"><span class="n">shifted_cols_header</span><span class="p">:</span> <span class="n">List</span></em><span class="sig-paren">)</span> &#x2192; pandas.core.frame.DataFrame<a class="headerlink" href="#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.compute_row_delta_sigle_samples_frame" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">compute_row_delta_sigle_samples_frame</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">sample_frame</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">pandas.core.frame.DataFrame</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">columns_header</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">List</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">shifted_cols_header</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">List</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">pandas.core.frame.DataFrame</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.compute_row_delta_sigle_samples_frame" title="Permalink to this definition">¶</a></dt>
 <dd><p>Computes the difference between each value present in th time column.
 Copies and shift by one position up all the values present in the remaining columns.</p>
 <dl class="field-list simple">
@@ -247,36 +253,36 @@ Header of sample_frame = [Time | Variable values]</p>
 </div>
 </dd></dl>
 
-<dl class="py method">
+<dl class="py property">
-<dt id="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.concatenated_samples">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.concatenated_samples">
-<em class="property">property </em><code class="sig-name descname">concatenated_samples</code><a class="headerlink" href="#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.concatenated_samples" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span> </em><span class="sig-name descname"><span class="pre">concatenated_samples</span></span><em class="property"><span class="pre">:</span> <span class="pre">pandas.core.frame.DataFrame</span></em><a class="headerlink" href="#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.concatenated_samples" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.dataset_id">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.dataset_id">
-<em class="property">abstract </em><code class="sig-name descname">dataset_id</code><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; object<a class="headerlink" href="#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.dataset_id" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">abstract</span> </em><span class="sig-name descname"><span class="pre">dataset_id</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; <span class="pre">object</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.dataset_id" title="Permalink to this definition">¶</a></dt>
 <dd><p>If the original dataset contains multiple dataset, this method returns a unique id to identify the current
 dataset</p>
 </dd></dl>
 
-<dl class="py method">
+<dl class="py property">
-<dt id="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.file_path">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.file_path">
-<em class="property">property </em><code class="sig-name descname">file_path</code><a class="headerlink" href="#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.file_path" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span> </em><span class="sig-name descname"><span class="pre">file_path</span></span><em class="property"><span class="pre">:</span> <span class="pre">str</span></em><a class="headerlink" href="#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.file_path" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
-<dl class="py method">
+<dl class="py property">
-<dt id="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.sorter">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.sorter">
-<em class="property">property </em><code class="sig-name descname">sorter</code><a class="headerlink" href="#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.sorter" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span> </em><span class="sig-name descname"><span class="pre">sorter</span></span><em class="property"><span class="pre">:</span> <span class="pre">List</span></em><a class="headerlink" href="#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.sorter" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
-<dl class="py method">
+<dl class="py property">
-<dt id="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.structure">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.structure">
-<em class="property">property </em><code class="sig-name descname">structure</code><a class="headerlink" href="#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.structure" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span> </em><span class="sig-name descname"><span class="pre">structure</span></span><em class="property"><span class="pre">:</span> <span class="pre">pandas.core.frame.DataFrame</span></em><a class="headerlink" href="#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.structure" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
-<dl class="py method">
+<dl class="py property">
-<dt id="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.variables">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.variables">
-<em class="property">property </em><code class="sig-name descname">variables</code><a class="headerlink" href="#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.variables" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span> </em><span class="sig-name descname"><span class="pre">variables</span></span><em class="property"><span class="pre">:</span> <span class="pre">pandas.core.frame.DataFrame</span></em><a class="headerlink" href="#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.variables" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </dd></dl>
@@ -285,8 +291,8 @@ dataset</p>
 <section id="module-PyCTBN.PyCTBN.utility.cache">
 <span id="pyctbn-pyctbn-utility-cache-module"></span><h2>PyCTBN.PyCTBN.utility.cache module<a class="headerlink" href="#module-PyCTBN.PyCTBN.utility.cache" title="Permalink to this headline">¶</a></h2>
 <dl class="py class">
-<dt id="PyCTBN.PyCTBN.utility.cache.Cache">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.utility.cache.Cache">
-<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.PyCTBN.utility.cache.</code><code class="sig-name descname">Cache</code><a class="headerlink" href="#PyCTBN.PyCTBN.utility.cache.Cache" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span> </em><span class="sig-prename descclassname"><span class="pre">PyCTBN.PyCTBN.utility.cache.</span></span><span class="sig-name descname"><span class="pre">Cache</span></span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.cache.Cache" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></p>
 <p>This class acts as a cache of <code class="docutils literal notranslate"><span class="pre">SetOfCims</span></code> objects for a node.</p>
 <dl class="field-list simple">
@@ -299,14 +305,14 @@ index is related</p>
 </dd>
 </dl>
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.utility.cache.Cache.clear">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.utility.cache.Cache.clear">
-<code class="sig-name descname">clear</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.cache.Cache.clear" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">clear</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.cache.Cache.clear" title="Permalink to this definition">¶</a></dt>
 <dd><p>Clear the contents both of <code class="docutils literal notranslate"><span class="pre">__actual_cache</span></code> and <code class="docutils literal notranslate"><span class="pre">__list_of_sets_of_parents</span></code>.</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.utility.cache.Cache.find">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.utility.cache.Cache.find">
-<code class="sig-name descname">find</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">parents_comb</span><span class="p">:</span> <span class="n">Set</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.cache.Cache.find" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">find</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">parents_comb</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">Set</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.cache.Cache.find" title="Permalink to this definition">¶</a></dt>
 <dd><p>Tries to find in cache given the symbolic parents combination <code class="docutils literal notranslate"><span class="pre">parents_comb</span></code> the <code class="docutils literal notranslate"><span class="pre">SetOfCims</span></code>
 related to that <code class="docutils literal notranslate"><span class="pre">parents_comb</span></code>.</p>
 <dl class="field-list simple">
@@ -324,8 +330,8 @@ None otherwise.</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.utility.cache.Cache.put">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.utility.cache.Cache.put">
-<code class="sig-name descname">put</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">parents_comb</span><span class="p">:</span> <span class="n">Set</span></em>, <em class="sig-param"><span class="n">socim</span><span class="p">:</span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims" title="PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims">PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims</a></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.cache.Cache.put" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">put</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">parents_comb</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">Set</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">socim</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims" title="PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims"><span class="pre">PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims</span></a></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.cache.Cache.put" title="Permalink to this definition">¶</a></dt>
 <dd><p>Place in cache the <code class="docutils literal notranslate"><span class="pre">SetOfCims</span></code> object, and the related symbolic index <code class="docutils literal notranslate"><span class="pre">parents_comb</span></code> in
 <code class="docutils literal notranslate"><span class="pre">__list_of_sets_of_parents</span></code>.</p>
 <dl class="field-list simple">
@@ -340,12 +346,14 @@ None otherwise.</p>
 
 </dd></dl>
 
+
 </section>
 <section id="module-PyCTBN.PyCTBN.utility.json_importer">
+
 <span id="pyctbn-pyctbn-utility-json-importer-module"></span><h2>PyCTBN.PyCTBN.utility.json_importer module<a class="headerlink" href="#module-PyCTBN.PyCTBN.utility.json_importer" title="Permalink to this headline">¶</a></h2>
 <dl class="py class">
-<dt id="PyCTBN.PyCTBN.utility.json_importer.JsonImporter">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.utility.json_importer.JsonImporter">
-<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.PyCTBN.utility.json_importer.</code><code class="sig-name descname">JsonImporter</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">file_path</span><span class="p">:</span> <span class="n">str</span></em>, <em class="sig-param"><span class="n">samples_label</span><span class="p">:</span> <span class="n">str</span></em>, <em class="sig-param"><span class="n">structure_label</span><span class="p">:</span> <span class="n">str</span></em>, <em class="sig-param"><span class="n">variables_label</span><span class="p">:</span> <span class="n">str</span></em>, <em class="sig-param"><span class="n">time_key</span><span class="p">:</span> <span class="n">str</span></em>, <em class="sig-param"><span class="n">variables_key</span><span class="p">:</span> <span class="n">str</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.json_importer.JsonImporter" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span> </em><span class="sig-prename descclassname"><span class="pre">PyCTBN.PyCTBN.utility.json_importer.</span></span><span class="sig-name descname"><span class="pre">JsonImporter</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">file_path</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">str</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">samples_label</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">str</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">structure_label</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">str</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">variables_label</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">str</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">time_key</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">str</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">variables_key</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">str</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cims_label</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">Optional</span><span class="p"><span class="pre">[</span></span><span class="pre">str</span><span class="p"><span class="pre">]</span></span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.json_importer.JsonImporter" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <a class="reference internal" href="#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter" title="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter"><code class="xref py py-class docutils literal notranslate"><span class="pre">PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter</span></code></a></p>
 <p>Implements the abstracts methods of AbstractImporter and adds all the necessary methods to process and prepare
 the data in json extension.</p>
@@ -371,27 +379,29 @@ the data in json extension.</p>
 </dd>
 </dl>
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.utility.json_importer.JsonImporter.build_sorter">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.utility.json_importer.JsonImporter.build_sorter">
-<code class="sig-name descname">build_sorter</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">sample_frame</span><span class="p">:</span> <span class="n">pandas.core.frame.DataFrame</span></em><span class="sig-paren">)</span> &#x2192; List<a class="headerlink" href="#PyCTBN.PyCTBN.utility.json_importer.JsonImporter.build_sorter" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">build_sorter</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">sample_frame</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">pandas.core.frame.DataFrame</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">List</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.json_importer.JsonImporter.build_sorter" title="Permalink to this definition">¶</a></dt>
 <dd><p>Implements the abstract method build_sorter of the <code class="xref py py-class docutils literal notranslate"><span class="pre">AbstractImporter</span></code> for this dataset.</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.utility.json_importer.JsonImporter.clear_data_frame_list">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.utility.json_importer.JsonImporter.clear_data_frame_list">
-<code class="sig-name descname">clear_data_frame_list</code><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; None<a class="headerlink" href="#PyCTBN.PyCTBN.utility.json_importer.JsonImporter.clear_data_frame_list" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">clear_data_frame_list</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; <span class="pre">None</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.json_importer.JsonImporter.clear_data_frame_list" title="Permalink to this definition">¶</a></dt>
 <dd><p>Removes all values present in the dataframes in the list <code class="docutils literal notranslate"><span class="pre">_df_samples_list</span></code>.</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.utility.json_importer.JsonImporter.dataset_id">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.utility.json_importer.JsonImporter.dataset_id">
-<code class="sig-name descname">dataset_id</code><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; object<a class="headerlink" href="#PyCTBN.PyCTBN.utility.json_importer.JsonImporter.dataset_id" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">dataset_id</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; <span class="pre">object</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.json_importer.JsonImporter.dataset_id" title="Permalink to this definition">¶</a></dt>
 <dd><p>If the original dataset contains multiple dataset, this method returns a unique id to identify the current
 dataset</p>
 </dd></dl>
 
 <dl class="py method">
+
 <dt id="PyCTBN.PyCTBN.utility.json_importer.JsonImporter.import_data">
 <code class="sig-name descname">import_data</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">indx</span><span class="p">:</span> <span class="n">int</span> <span class="o">=</span> <span class="default_value">0</span></em><span class="sig-paren">)</span> &#x2192; None<a class="headerlink" href="#PyCTBN.PyCTBN.utility.json_importer.JsonImporter.import_data" title="Permalink to this definition">¶</a></dt>
+
 <dd><p>Implements the abstract method of <code class="xref py py-class docutils literal notranslate"><span class="pre">AbstractImporter</span></code>.</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
@@ -401,8 +411,8 @@ dataset</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.utility.json_importer.JsonImporter.import_sampled_cims">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.utility.json_importer.JsonImporter.import_sampled_cims">
-<code class="sig-name descname">import_sampled_cims</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">raw_data</span><span class="p">:</span> <span class="n">List</span></em>, <em class="sig-param"><span class="n">indx</span><span class="p">:</span> <span class="n">int</span></em>, <em class="sig-param"><span class="n">cims_key</span><span class="p">:</span> <span class="n">str</span></em><span class="sig-paren">)</span> &#x2192; Dict<a class="headerlink" href="#PyCTBN.PyCTBN.utility.json_importer.JsonImporter.import_sampled_cims" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">import_sampled_cims</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">raw_data</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">List</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">indx</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">int</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cims_key</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">str</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">Dict</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.json_importer.JsonImporter.import_sampled_cims" title="Permalink to this definition">¶</a></dt>
 <dd><p>Imports the synthetic CIMS in the dataset in a dictionary, using variables labels
 as keys for the set of CIMS of a particular node.</p>
 <dl class="field-list simple">
@@ -423,8 +433,8 @@ as keys for the set of CIMS of a particular node.</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.utility.json_importer.JsonImporter.import_structure">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.utility.json_importer.JsonImporter.import_structure">
-<code class="sig-name descname">import_structure</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">raw_data</span><span class="p">:</span> <span class="n">List</span></em><span class="sig-paren">)</span> &#x2192; pandas.core.frame.DataFrame<a class="headerlink" href="#PyCTBN.PyCTBN.utility.json_importer.JsonImporter.import_structure" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">import_structure</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">raw_data</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">List</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">pandas.core.frame.DataFrame</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.json_importer.JsonImporter.import_structure" title="Permalink to this definition">¶</a></dt>
 <dd><p>Imports in a dataframe the data in the list raw_data at the key <code class="docutils literal notranslate"><span class="pre">_structure_label</span></code></p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
@@ -440,8 +450,8 @@ as keys for the set of CIMS of a particular node.</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.utility.json_importer.JsonImporter.import_trajectories">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.utility.json_importer.JsonImporter.import_trajectories">
-<code class="sig-name descname">import_trajectories</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">raw_data</span><span class="p">:</span> <span class="n">List</span></em><span class="sig-paren">)</span> &#x2192; List<a class="headerlink" href="#PyCTBN.PyCTBN.utility.json_importer.JsonImporter.import_trajectories" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">import_trajectories</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">raw_data</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">List</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">List</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.json_importer.JsonImporter.import_trajectories" title="Permalink to this definition">¶</a></dt>
 <dd><p>Imports the trajectories from the list of dicts <code class="docutils literal notranslate"><span class="pre">raw_data</span></code>.</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
@@ -457,8 +467,8 @@ as keys for the set of CIMS of a particular node.</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.utility.json_importer.JsonImporter.import_variables">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.utility.json_importer.JsonImporter.import_variables">
-<code class="sig-name descname">import_variables</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">raw_data</span><span class="p">:</span> <span class="n">List</span></em><span class="sig-paren">)</span> &#x2192; pandas.core.frame.DataFrame<a class="headerlink" href="#PyCTBN.PyCTBN.utility.json_importer.JsonImporter.import_variables" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">import_variables</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">raw_data</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">List</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">pandas.core.frame.DataFrame</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.json_importer.JsonImporter.import_variables" title="Permalink to this definition">¶</a></dt>
 <dd><p>Imports the data in <code class="docutils literal notranslate"><span class="pre">raw_data</span></code> at the key <code class="docutils literal notranslate"><span class="pre">_variables_label</span></code>.</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
@@ -474,8 +484,8 @@ as keys for the set of CIMS of a particular node.</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.utility.json_importer.JsonImporter.normalize_trajectories">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.utility.json_importer.JsonImporter.normalize_trajectories">
-<code class="sig-name descname">normalize_trajectories</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">raw_data</span><span class="p">:</span> <span class="n">List</span></em>, <em class="sig-param"><span class="n">indx</span><span class="p">:</span> <span class="n">int</span></em>, <em class="sig-param"><span class="n">trajectories_key</span><span class="p">:</span> <span class="n">str</span></em><span class="sig-paren">)</span> &#x2192; List<a class="headerlink" href="#PyCTBN.PyCTBN.utility.json_importer.JsonImporter.normalize_trajectories" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">normalize_trajectories</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">raw_data</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">List</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">indx</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">int</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">trajectories_key</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">str</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">List</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.json_importer.JsonImporter.normalize_trajectories" title="Permalink to this definition">¶</a></dt>
 <dd><p>Extracts the trajectories in <code class="docutils literal notranslate"><span class="pre">raw_data</span></code> at the index <code class="docutils literal notranslate"><span class="pre">index</span></code> at the key <code class="docutils literal notranslate"><span class="pre">trajectories</span> <span class="pre">key</span></code>.</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
@@ -495,8 +505,8 @@ as keys for the set of CIMS of a particular node.</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.utility.json_importer.JsonImporter.one_level_normalizing">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.utility.json_importer.JsonImporter.one_level_normalizing">
-<code class="sig-name descname">one_level_normalizing</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">raw_data</span><span class="p">:</span> <span class="n">List</span></em>, <em class="sig-param"><span class="n">indx</span><span class="p">:</span> <span class="n">int</span></em>, <em class="sig-param"><span class="n">key</span><span class="p">:</span> <span class="n">str</span></em><span class="sig-paren">)</span> &#x2192; pandas.core.frame.DataFrame<a class="headerlink" href="#PyCTBN.PyCTBN.utility.json_importer.JsonImporter.one_level_normalizing" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">one_level_normalizing</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">raw_data</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">List</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">indx</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">int</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">key</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">str</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">pandas.core.frame.DataFrame</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.json_importer.JsonImporter.one_level_normalizing" title="Permalink to this definition">¶</a></dt>
 <dd><p>Extracts the one-level nested data in the list <code class="docutils literal notranslate"><span class="pre">raw_data</span></code> at the index <code class="docutils literal notranslate"><span class="pre">indx</span></code> at the key <code class="docutils literal notranslate"><span class="pre">key</span></code>.</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
@@ -516,8 +526,8 @@ as keys for the set of CIMS of a particular node.</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.utility.json_importer.JsonImporter.read_json_file">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.utility.json_importer.JsonImporter.read_json_file">
-<code class="sig-name descname">read_json_file</code><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; List<a class="headerlink" href="#PyCTBN.PyCTBN.utility.json_importer.JsonImporter.read_json_file" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">read_json_file</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; <span class="pre">List</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.json_importer.JsonImporter.read_json_file" title="Permalink to this definition">¶</a></dt>
 <dd><p>Reads the JSON file in the path self.filePath.</p>
 <dl class="field-list simple">
 <dt class="field-odd">Returns</dt>
@@ -535,8 +545,8 @@ as keys for the set of CIMS of a particular node.</p>
 <section id="module-PyCTBN.PyCTBN.utility.sample_importer">
 <span id="pyctbn-pyctbn-utility-sample-importer-module"></span><h2>PyCTBN.PyCTBN.utility.sample_importer module<a class="headerlink" href="#module-PyCTBN.PyCTBN.utility.sample_importer" title="Permalink to this headline">¶</a></h2>
 <dl class="py class">
-<dt id="PyCTBN.PyCTBN.utility.sample_importer.SampleImporter">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.utility.sample_importer.SampleImporter">
-<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.PyCTBN.utility.sample_importer.</code><code class="sig-name descname">SampleImporter</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">trajectory_list</span><span class="p">:</span> <span class="n">Union<span class="p">[</span>pandas.core.frame.DataFrame<span class="p">, </span>numpy.ndarray<span class="p">, </span>List<span class="p">]</span></span> <span class="o">=</span> <span class="default_value">None</span></em>, <em class="sig-param"><span class="n">variables</span><span class="p">:</span> <span class="n">Union<span class="p">[</span>pandas.core.frame.DataFrame<span class="p">, </span>numpy.ndarray<span class="p">, </span>List<span class="p">]</span></span> <span class="o">=</span> <span class="default_value">None</span></em>, <em class="sig-param"><span class="n">prior_net_structure</span><span class="p">:</span> <span class="n">Union<span class="p">[</span>pandas.core.frame.DataFrame<span class="p">, </span>numpy.ndarray<span class="p">, </span>List<span class="p">]</span></span> <span class="o">=</span> <span class="default_value">None</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.sample_importer.SampleImporter" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span> </em><span class="sig-prename descclassname"><span class="pre">PyCTBN.PyCTBN.utility.sample_importer.</span></span><span class="sig-name descname"><span class="pre">SampleImporter</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">trajectory_list</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">Optional</span><span class="p"><span class="pre">[</span></span><span class="pre">Union</span><span class="p"><span class="pre">[</span></span><span class="pre">pandas.core.frame.DataFrame</span><span class="p"><span class="pre">,</span> </span><span class="pre">numpy.ndarray</span><span class="p"><span class="pre">,</span> </span><span class="pre">List</span><span class="p"><span class="pre">]</span></span><span class="p"><span class="pre">]</span></span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">variables</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">Optional</span><span class="p"><span class="pre">[</span></span><span class="pre">Union</span><span class="p"><span class="pre">[</span></span><span class="pre">pandas.core.frame.DataFrame</span><span class="p"><span class="pre">,</span> </span><span class="pre">numpy.ndarray</span><span class="p"><span class="pre">,</span> </span><span class="pre">List</span><span class="p"><span class="pre">]</span></span><span class="p"><span class="pre">]</span></span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">prior_net_structure</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">Optional</span><span class="p"><span class="pre">[</span></span><span class="pre">Union</span><span class="p"><span class="pre">[</span></span><span class="pre">pandas.core.frame.DataFrame</span><span class="p"><span class="pre">,</span> </span><span class="pre">numpy.ndarray</span><span class="p"><span class="pre">,</span> </span><span class="pre">List</span><span class="p"><span class="pre">]</span></span><span class="p"><span class="pre">]</span></span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.sample_importer.SampleImporter" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <a class="reference internal" href="#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter" title="PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter"><code class="xref py py-class docutils literal notranslate"><span class="pre">PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter</span></code></a></p>
 <p>Implements the abstracts methods of AbstractImporter and adds all the necessary methods to process and prepare
 the data loaded directly by using DataFrame</p>
@@ -556,21 +566,21 @@ the data loaded directly by using DataFrame</p>
 </dd>
 </dl>
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.utility.sample_importer.SampleImporter.build_sorter">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.utility.sample_importer.SampleImporter.build_sorter">
-<code class="sig-name descname">build_sorter</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">sample_frame</span><span class="p">:</span> <span class="n">pandas.core.frame.DataFrame</span></em><span class="sig-paren">)</span> &#x2192; List<a class="headerlink" href="#PyCTBN.PyCTBN.utility.sample_importer.SampleImporter.build_sorter" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">build_sorter</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">sample_frame</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">pandas.core.frame.DataFrame</span></span></em><span class="sig-paren">)</span> &#x2192; <span class="pre">List</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.sample_importer.SampleImporter.build_sorter" title="Permalink to this definition">¶</a></dt>
 <dd><p>Implements the abstract method build_sorter of the <code class="xref py py-class docutils literal notranslate"><span class="pre">AbstractImporter</span></code> in order to get the ordered variables list.</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.utility.sample_importer.SampleImporter.dataset_id">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.utility.sample_importer.SampleImporter.dataset_id">
-<code class="sig-name descname">dataset_id</code><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; str<a class="headerlink" href="#PyCTBN.PyCTBN.utility.sample_importer.SampleImporter.dataset_id" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">dataset_id</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; <span class="pre">str</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.sample_importer.SampleImporter.dataset_id" title="Permalink to this definition">¶</a></dt>
 <dd><p>If the original dataset contains multiple dataset, this method returns a unique id to identify the current
 dataset</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.PyCTBN.utility.sample_importer.SampleImporter.import_data">
+<dt class="sig sig-object py" id="PyCTBN.PyCTBN.utility.sample_importer.SampleImporter.import_data">
-<code class="sig-name descname">import_data</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">header_column</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.sample_importer.SampleImporter.import_data" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">import_data</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">header_column</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.PyCTBN.utility.sample_importer.SampleImporter.import_data" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </dd></dl>
@@ -618,6 +628,9 @@ dataset</p>
             FILE_SUFFIX:'.html',
             HAS_SOURCE:  true
         };
+    </script>
+    <script type="text/javascript" src="_static/documentation_options.js">
+
     </script>
     <script type="text/javascript" src="_static/jquery.js">
 
@@ -628,9 +641,6 @@ dataset</p>
     <script type="text/javascript" src="_static/doctools.js">
 
     </script>
-    <script type="text/javascript" src="_static/language_data.js">
-
-    </script>
 
   
 

docs/PyCTBN.html

@@ -19,6 +19,10 @@
     <link rel="stylesheet" href="_static/css/pdj.css" type="text/css" />
 
   
+    <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
+  
+    <link rel="stylesheet" href="_static/css/pdj.css" type="text/css" />
+  
 
   
 
@@ -142,18 +146,22 @@
 <li class="toctree-l3"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html">PyCTBN.PyCTBN.structure_graph package</a><ul>
 <li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#submodules">Submodules</a></li>
 <li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix">PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix module</a></li>
+<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.network_generator">PyCTBN.PyCTBN.structure_graph.network_generator module</a></li>
 <li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.network_graph">PyCTBN.PyCTBN.structure_graph.network_graph module</a></li>
 <li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.sample_path">PyCTBN.PyCTBN.structure_graph.sample_path module</a></li>
 <li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.set_of_cims">PyCTBN.PyCTBN.structure_graph.set_of_cims module</a></li>
 <li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.structure">PyCTBN.PyCTBN.structure_graph.structure module</a></li>
 <li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.trajectory">PyCTBN.PyCTBN.structure_graph.trajectory module</a></li>
+<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.trajectory_generator">PyCTBN.PyCTBN.structure_graph.trajectory_generator module</a></li>
 <li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph">Module contents</a></li>
 </ul>
 </li>
 <li class="toctree-l3"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html">PyCTBN.PyCTBN.utility package</a><ul>
 <li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#submodules">Submodules</a></li>
+<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.abstract_exporter">PyCTBN.PyCTBN.utility.abstract_exporter module</a></li>
 <li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.abstract_importer">PyCTBN.PyCTBN.utility.abstract_importer module</a></li>
 <li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.cache">PyCTBN.PyCTBN.utility.cache module</a></li>
+<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.json_exporter">PyCTBN.PyCTBN.utility.json_exporter module</a></li>
 <li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.json_importer">PyCTBN.PyCTBN.utility.json_importer module</a></li>
 <li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.sample_importer">PyCTBN.PyCTBN.utility.sample_importer module</a></li>
 <li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility">Module contents</a></li>
@@ -164,13 +172,59 @@
 <li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.html#module-PyCTBN.PyCTBN">Module contents</a></li>
 </ul>
 </li>
+<li class="toctree-l1"><a class="reference internal" href="PyCTBN.tests.html">PyCTBN.tests package</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.html#subpackages">Subpackages</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="PyCTBN.tests.estimators.html">PyCTBN.tests.estimators package</a><ul>
+<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.estimators.html#submodules">Submodules</a></li>
+<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.estimators.html#module-PyCTBN.tests.estimators.test_parameters_estimator">PyCTBN.tests.estimators.test_parameters_estimator module</a></li>
+<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.estimators.html#pyctbn-tests-estimators-test-structure-constraint-based-estimator-module">PyCTBN.tests.estimators.test_structure_constraint_based_estimator module</a></li>
+<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.estimators.html#module-PyCTBN.tests.estimators.test_structure_estimator">PyCTBN.tests.estimators.test_structure_estimator module</a></li>
+<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.estimators.html#pyctbn-tests-estimators-test-structure-score-based-estimator-module">PyCTBN.tests.estimators.test_structure_score_based_estimator module</a></li>
+<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.estimators.html#module-PyCTBN.tests.estimators">Module contents</a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="PyCTBN.tests.optimizers.html">PyCTBN.tests.optimizers package</a><ul>
+<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.optimizers.html#submodules">Submodules</a></li>
+<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.optimizers.html#pyctbn-tests-optimizers-test-hill-climbing-search-module">PyCTBN.tests.optimizers.test_hill_climbing_search module</a></li>
+<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.optimizers.html#pyctbn-tests-optimizers-test-tabu-search-module">PyCTBN.tests.optimizers.test_tabu_search module</a></li>
+<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.optimizers.html#module-PyCTBN.tests.optimizers">Module contents</a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="PyCTBN.tests.structure_graph.html">PyCTBN.tests.structure_graph package</a><ul>
+<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.structure_graph.html#submodules">Submodules</a></li>
+<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_cim">PyCTBN.tests.structure_graph.test_cim module</a></li>
+<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.structure_graph.html#pyctbn-tests-structure-graph-test-networkgenerator-module">PyCTBN.tests.structure_graph.test_networkgenerator module</a></li>
+<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_networkgraph">PyCTBN.tests.structure_graph.test_networkgraph module</a></li>
+<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_sample_path">PyCTBN.tests.structure_graph.test_sample_path module</a></li>
+<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_setofcims">PyCTBN.tests.structure_graph.test_setofcims module</a></li>
+<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_structure">PyCTBN.tests.structure_graph.test_structure module</a></li>
+<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_trajectory">PyCTBN.tests.structure_graph.test_trajectory module</a></li>
+<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.structure_graph.html#pyctbn-tests-structure-graph-test-trajectorygenerator-module">PyCTBN.tests.structure_graph.test_trajectorygenerator module</a></li>
+<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph">Module contents</a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="PyCTBN.tests.utility.html">PyCTBN.tests.utility package</a><ul>
+<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.utility.html#submodules">Submodules</a></li>
+<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.utility.html#module-PyCTBN.tests.utility.test_cache">PyCTBN.tests.utility.test_cache module</a></li>
+<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.utility.html#module-PyCTBN.tests.utility.test_json_importer">PyCTBN.tests.utility.test_json_importer module</a></li>
+<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.utility.html#module-PyCTBN.tests.utility.test_sample_importer">PyCTBN.tests.utility.test_sample_importer module</a></li>
+<li class="toctree-l4"><a class="reference internal" href="PyCTBN.tests.utility.html#module-PyCTBN.tests.utility">Module contents</a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.html#module-PyCTBN.tests">Module contents</a></li>
+</ul>
+</li>
 </ul>
 </div>
 </section>
 <section id="submodules">
 <h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this headline">¶</a></h2>
+
 </section>
 <section id="module-PyCTBN">
+
 <span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-PyCTBN" title="Permalink to this headline">¶</a></h2>
 </section>
 </section>
@@ -203,6 +257,9 @@
             FILE_SUFFIX:'.html',
             HAS_SOURCE:  true
         };
+    </script>
+    <script type="text/javascript" src="_static/documentation_options.js">
+
     </script>
     <script type="text/javascript" src="_static/jquery.js">
 
@@ -213,9 +270,6 @@
     <script type="text/javascript" src="_static/doctools.js">
 
     </script>
-    <script type="text/javascript" src="_static/language_data.js">
-
-    </script>
 
   
 

docs/PyCTBN.tests.estimators.html

@@ -19,6 +19,10 @@
     <link rel="stylesheet" href="_static/css/pdj.css" type="text/css" />
 
   
+    <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
+  
+    <link rel="stylesheet" href="_static/css/pdj.css" type="text/css" />
+  
 
   
 
@@ -120,42 +124,43 @@
 <section id="module-PyCTBN.tests.estimators.test_parameters_estimator">
 <span id="pyctbn-tests-estimators-test-parameters-estimator-module"></span><h2>PyCTBN.tests.estimators.test_parameters_estimator module<a class="headerlink" href="#module-PyCTBN.tests.estimators.test_parameters_estimator" title="Permalink to this headline">¶</a></h2>
 <dl class="py class">
-<dt id="PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior">
+<dt class="sig sig-object py" id="PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior">
-<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.tests.estimators.test_parameters_estimator.</code><code class="sig-name descname">TestParametersEstimatior</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">methodName</span><span class="o">=</span><span class="default_value">'runTest'</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span> </em><span class="sig-prename descclassname"><span class="pre">PyCTBN.tests.estimators.test_parameters_estimator.</span></span><span class="sig-name descname"><span class="pre">TestParametersEstimatior</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">methodName</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'runTest'</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">unittest.case.TestCase</span></code></p>
 <dl class="py method">
-<dt id="PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.aux_import_sampled_cims">
+<dt class="sig sig-object py" id="PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.aux_import_sampled_cims">
-<code class="sig-name descname">aux_import_sampled_cims</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">cims_label</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.aux_import_sampled_cims" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">aux_import_sampled_cims</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">cims_label</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.aux_import_sampled_cims" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.cim_equality_test">
+<dt class="sig sig-object py" id="PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.cim_equality_test">
-<code class="sig-name descname">cim_equality_test</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">cim1</span></em>, <em class="sig-param"><span class="n">cim2</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.cim_equality_test" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">cim_equality_test</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">cim1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cim2</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.cim_equality_test" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.equality_of_cims_of_node">
+<dt class="sig sig-object py" id="PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.equality_of_cims_of_node">
-<code class="sig-name descname">equality_of_cims_of_node</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">sampled_cims</span></em>, <em class="sig-param"><span class="n">estimated_cims</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.equality_of_cims_of_node" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">equality_of_cims_of_node</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">sampled_cims</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">estimated_cims</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.equality_of_cims_of_node" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.setUpClass">
+<dt class="sig sig-object py" id="PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.setUpClass">
-<em class="property">classmethod </em><code class="sig-name descname">setUpClass</code><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; None<a class="headerlink" href="#PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.setUpClass" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">classmethod</span> </em><span class="sig-name descname"><span class="pre">setUpClass</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; <span class="pre">None</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.setUpClass" title="Permalink to this definition">¶</a></dt>
 <dd><p>Hook method for setting up class fixture before running tests in the class.</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.test_compute_parameters_for_node">
+<dt class="sig sig-object py" id="PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.test_compute_parameters_for_node">
-<code class="sig-name descname">test_compute_parameters_for_node</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.test_compute_parameters_for_node" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_compute_parameters_for_node</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.test_compute_parameters_for_node" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.test_fast_init">
+<dt class="sig sig-object py" id="PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.test_fast_init">
-<code class="sig-name descname">test_fast_init</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.test_fast_init" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_fast_init</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.test_fast_init" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </dd></dl>
 
+
 </section>
 <section id="module-PyCTBN.tests.estimators.test_structure_constraint_based_estimator">
 <span id="pyctbn-tests-estimators-test-structure-constraint-based-estimator-module"></span><h2>PyCTBN.tests.estimators.test_structure_constraint_based_estimator module<a class="headerlink" href="#module-PyCTBN.tests.estimators.test_structure_constraint_based_estimator" title="Permalink to this headline">¶</a></h2>
@@ -188,59 +193,61 @@
 
 </section>
 <section id="module-PyCTBN.tests.estimators.test_structure_estimator">
+
 <span id="pyctbn-tests-estimators-test-structure-estimator-module"></span><h2>PyCTBN.tests.estimators.test_structure_estimator module<a class="headerlink" href="#module-PyCTBN.tests.estimators.test_structure_estimator" title="Permalink to this headline">¶</a></h2>
 <dl class="py class">
-<dt id="PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator">
+<dt class="sig sig-object py" id="PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator">
-<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.tests.estimators.test_structure_estimator.</code><code class="sig-name descname">TestStructureEstimator</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">methodName</span><span class="o">=</span><span class="default_value">'runTest'</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span> </em><span class="sig-prename descclassname"><span class="pre">PyCTBN.tests.estimators.test_structure_estimator.</span></span><span class="sig-name descname"><span class="pre">TestStructureEstimator</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">methodName</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'runTest'</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">unittest.case.TestCase</span></code></p>
 <dl class="py method">
-<dt id="PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.setUpClass">
+<dt class="sig sig-object py" id="PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.setUpClass">
-<em class="property">classmethod </em><code class="sig-name descname">setUpClass</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.setUpClass" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">classmethod</span> </em><span class="sig-name descname"><span class="pre">setUpClass</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.setUpClass" title="Permalink to this definition">¶</a></dt>
 <dd><p>Hook method for setting up class fixture before running tests in the class.</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_adjacency_matrix">
+<dt class="sig sig-object py" id="PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_adjacency_matrix">
-<code class="sig-name descname">test_adjacency_matrix</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_adjacency_matrix" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_adjacency_matrix</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_adjacency_matrix" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_build_complete_graph">
+<dt class="sig sig-object py" id="PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_build_complete_graph">
-<code class="sig-name descname">test_build_complete_graph</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_build_complete_graph" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_build_complete_graph</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_build_complete_graph" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_build_removable_edges_matrix">
+<dt class="sig sig-object py" id="PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_build_removable_edges_matrix">
-<code class="sig-name descname">test_build_removable_edges_matrix</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_build_removable_edges_matrix" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_build_removable_edges_matrix</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_build_removable_edges_matrix" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_generate_possible_sub_sets_of_size">
+<dt class="sig sig-object py" id="PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_generate_possible_sub_sets_of_size">
-<code class="sig-name descname">test_generate_possible_sub_sets_of_size</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_generate_possible_sub_sets_of_size" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_generate_possible_sub_sets_of_size</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_generate_possible_sub_sets_of_size" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_init">
+<dt class="sig sig-object py" id="PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_init">
-<code class="sig-name descname">test_init</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_init" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_init</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_init" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_save_plot_estimated_graph">
+<dt class="sig sig-object py" id="PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_save_plot_estimated_graph">
-<code class="sig-name descname">test_save_plot_estimated_graph</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_save_plot_estimated_graph" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_save_plot_estimated_graph</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_save_plot_estimated_graph" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_save_results">
+<dt class="sig sig-object py" id="PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_save_results">
-<code class="sig-name descname">test_save_results</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_save_results" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_save_results</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_save_results" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_time">
+<dt class="sig sig-object py" id="PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_time">
-<code class="sig-name descname">test_time</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_time" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_time</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_time" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </dd></dl>
 
+
 </section>
 <section id="module-PyCTBN.tests.estimators.test_structure_score_based_estimator">
 <span id="pyctbn-tests-estimators-test-structure-score-based-estimator-module"></span><h2>PyCTBN.tests.estimators.test_structure_score_based_estimator module<a class="headerlink" href="#module-PyCTBN.tests.estimators.test_structure_score_based_estimator" title="Permalink to this headline">¶</a></h2>
@@ -310,6 +317,9 @@
             FILE_SUFFIX:'.html',
             HAS_SOURCE:  true
         };
+    </script>
+    <script type="text/javascript" src="_static/documentation_options.js">
+
     </script>
     <script type="text/javascript" src="_static/jquery.js">
 
@@ -320,9 +330,6 @@
     <script type="text/javascript" src="_static/doctools.js">
 
     </script>
-    <script type="text/javascript" src="_static/language_data.js">
-
-    </script>
 
   
 

docs/PyCTBN.tests.html

@@ -19,6 +19,10 @@
     <link rel="stylesheet" href="_static/css/pdj.css" type="text/css" />
 
   
+    <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
+  
+    <link rel="stylesheet" href="_static/css/pdj.css" type="text/css" />
+  
 
   
 
@@ -121,27 +125,29 @@
 <li class="toctree-l1"><a class="reference internal" href="PyCTBN.tests.estimators.html">PyCTBN.tests.estimators package</a><ul>
 <li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.estimators.html#submodules">Submodules</a></li>
 <li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.estimators.html#module-PyCTBN.tests.estimators.test_parameters_estimator">PyCTBN.tests.estimators.test_parameters_estimator module</a></li>
-<li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.estimators.html#module-PyCTBN.tests.estimators.test_structure_constraint_based_estimator">PyCTBN.tests.estimators.test_structure_constraint_based_estimator module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.estimators.html#pyctbn-tests-estimators-test-structure-constraint-based-estimator-module">PyCTBN.tests.estimators.test_structure_constraint_based_estimator module</a></li>
 <li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.estimators.html#module-PyCTBN.tests.estimators.test_structure_estimator">PyCTBN.tests.estimators.test_structure_estimator module</a></li>
-<li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.estimators.html#module-PyCTBN.tests.estimators.test_structure_score_based_estimator">PyCTBN.tests.estimators.test_structure_score_based_estimator module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.estimators.html#pyctbn-tests-estimators-test-structure-score-based-estimator-module">PyCTBN.tests.estimators.test_structure_score_based_estimator module</a></li>
 <li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.estimators.html#module-PyCTBN.tests.estimators">Module contents</a></li>
 </ul>
 </li>
 <li class="toctree-l1"><a class="reference internal" href="PyCTBN.tests.optimizers.html">PyCTBN.tests.optimizers package</a><ul>
 <li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.optimizers.html#submodules">Submodules</a></li>
-<li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.optimizers.html#module-PyCTBN.tests.optimizers.test_hill_climbing_search">PyCTBN.tests.optimizers.test_hill_climbing_search module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.optimizers.html#pyctbn-tests-optimizers-test-hill-climbing-search-module">PyCTBN.tests.optimizers.test_hill_climbing_search module</a></li>
-<li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.optimizers.html#module-PyCTBN.tests.optimizers.test_tabu_search">PyCTBN.tests.optimizers.test_tabu_search module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.optimizers.html#pyctbn-tests-optimizers-test-tabu-search-module">PyCTBN.tests.optimizers.test_tabu_search module</a></li>
 <li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.optimizers.html#module-PyCTBN.tests.optimizers">Module contents</a></li>
 </ul>
 </li>
 <li class="toctree-l1"><a class="reference internal" href="PyCTBN.tests.structure_graph.html">PyCTBN.tests.structure_graph package</a><ul>
 <li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.structure_graph.html#submodules">Submodules</a></li>
 <li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_cim">PyCTBN.tests.structure_graph.test_cim module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.structure_graph.html#pyctbn-tests-structure-graph-test-networkgenerator-module">PyCTBN.tests.structure_graph.test_networkgenerator module</a></li>
 <li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_networkgraph">PyCTBN.tests.structure_graph.test_networkgraph module</a></li>
 <li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_sample_path">PyCTBN.tests.structure_graph.test_sample_path module</a></li>
 <li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_setofcims">PyCTBN.tests.structure_graph.test_setofcims module</a></li>
 <li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_structure">PyCTBN.tests.structure_graph.test_structure module</a></li>
 <li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_trajectory">PyCTBN.tests.structure_graph.test_trajectory module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.structure_graph.html#pyctbn-tests-structure-graph-test-trajectorygenerator-module">PyCTBN.tests.structure_graph.test_trajectorygenerator module</a></li>
 <li class="toctree-l2"><a class="reference internal" href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph">Module contents</a></li>
 </ul>
 </li>
@@ -189,6 +195,9 @@
             FILE_SUFFIX:'.html',
             HAS_SOURCE:  true
         };
+    </script>
+    <script type="text/javascript" src="_static/documentation_options.js">
+
     </script>
     <script type="text/javascript" src="_static/jquery.js">
 
@@ -199,9 +208,6 @@
     <script type="text/javascript" src="_static/doctools.js">
 
     </script>
-    <script type="text/javascript" src="_static/language_data.js">
-
-    </script>
 
   
 

docs/PyCTBN.tests.optimizers.html

@@ -19,6 +19,10 @@
     <link rel="stylesheet" href="_static/css/pdj.css" type="text/css" />
 
   
+    <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
+  
+    <link rel="stylesheet" href="_static/css/pdj.css" type="text/css" />
+  
 
   
 
@@ -200,6 +204,9 @@
             FILE_SUFFIX:'.html',
             HAS_SOURCE:  true
         };
+    </script>
+    <script type="text/javascript" src="_static/documentation_options.js">
+
     </script>
     <script type="text/javascript" src="_static/jquery.js">
 
@@ -210,9 +217,6 @@
     <script type="text/javascript" src="_static/doctools.js">
 
     </script>
-    <script type="text/javascript" src="_static/language_data.js">
-
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docs/PyCTBN.tests.structure_graph.html

@@ -19,6 +19,10 @@
     <link rel="stylesheet" href="_static/css/pdj.css" type="text/css" />
 
   
+    <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
+  
+    <link rel="stylesheet" href="_static/css/pdj.css" type="text/css" />
+  
 
   
 
@@ -120,28 +124,28 @@
 <section id="module-PyCTBN.tests.structure_graph.test_cim">
 <span id="pyctbn-tests-structure-graph-test-cim-module"></span><h2>PyCTBN.tests.structure_graph.test_cim module<a class="headerlink" href="#module-PyCTBN.tests.structure_graph.test_cim" title="Permalink to this headline">¶</a></h2>
 <dl class="py class">
-<dt id="PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix">
-<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.tests.structure_graph.test_cim.</code><code class="sig-name descname">TestConditionalIntensityMatrix</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">methodName</span><span class="o">=</span><span class="default_value">'runTest'</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span> </em><span class="sig-prename descclassname"><span class="pre">PyCTBN.tests.structure_graph.test_cim.</span></span><span class="sig-name descname"><span class="pre">TestConditionalIntensityMatrix</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">methodName</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'runTest'</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">unittest.case.TestCase</span></code></p>
 <dl class="py method">
-<dt id="PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix.setUpClass">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix.setUpClass">
-<em class="property">classmethod </em><code class="sig-name descname">setUpClass</code><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; None<a class="headerlink" href="#PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix.setUpClass" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">classmethod</span> </em><span class="sig-name descname"><span class="pre">setUpClass</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; <span class="pre">None</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix.setUpClass" title="Permalink to this definition">¶</a></dt>
 <dd><p>Hook method for setting up class fixture before running tests in the class.</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix.test_compute_cim_coefficients">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix.test_compute_cim_coefficients">
-<code class="sig-name descname">test_compute_cim_coefficients</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix.test_compute_cim_coefficients" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_compute_cim_coefficients</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix.test_compute_cim_coefficients" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix.test_init">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix.test_init">
-<code class="sig-name descname">test_init</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix.test_init" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_init</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix.test_init" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix.test_repr">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix.test_repr">
-<code class="sig-name descname">test_repr</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix.test_repr" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_repr</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix.test_repr" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </dd></dl>
@@ -150,103 +154,103 @@
 <section id="module-PyCTBN.tests.structure_graph.test_networkgraph">
 <span id="pyctbn-tests-structure-graph-test-networkgraph-module"></span><h2>PyCTBN.tests.structure_graph.test_networkgraph module<a class="headerlink" href="#module-PyCTBN.tests.structure_graph.test_networkgraph" title="Permalink to this headline">¶</a></h2>
 <dl class="py class">
-<dt id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph">
-<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.tests.structure_graph.test_networkgraph.</code><code class="sig-name descname">TestNetworkGraph</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">methodName</span><span class="o">=</span><span class="default_value">'runTest'</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span> </em><span class="sig-prename descclassname"><span class="pre">PyCTBN.tests.structure_graph.test_networkgraph.</span></span><span class="sig-name descname"><span class="pre">TestNetworkGraph</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">methodName</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'runTest'</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">unittest.case.TestCase</span></code></p>
 <dl class="py method">
-<dt id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.aux_build_p_combs_structure">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.aux_build_p_combs_structure">
-<code class="sig-name descname">aux_build_p_combs_structure</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">graph</span></em>, <em class="sig-param"><span class="n">p_vals</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.aux_build_p_combs_structure" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">aux_build_p_combs_structure</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">graph</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">p_vals</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.aux_build_p_combs_structure" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.aux_build_time_columns_filtering_structure_for_a_node">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.aux_build_time_columns_filtering_structure_for_a_node">
-<code class="sig-name descname">aux_build_time_columns_filtering_structure_for_a_node</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">graph</span></em>, <em class="sig-param"><span class="n">node_id</span></em>, <em class="sig-param"><span class="n">p_indxs</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.aux_build_time_columns_filtering_structure_for_a_node" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">aux_build_time_columns_filtering_structure_for_a_node</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">graph</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">node_id</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">p_indxs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.aux_build_time_columns_filtering_structure_for_a_node" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.aux_build_time_scalar_indexing_structure_for_a_node">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.aux_build_time_scalar_indexing_structure_for_a_node">
-<code class="sig-name descname">aux_build_time_scalar_indexing_structure_for_a_node</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">graph</span></em>, <em class="sig-param"><span class="n">node_id</span></em>, <em class="sig-param"><span class="n">parents_indxs</span></em>, <em class="sig-param"><span class="n">parents_labels</span></em>, <em class="sig-param"><span class="n">parents_vals</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.aux_build_time_scalar_indexing_structure_for_a_node" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">aux_build_time_scalar_indexing_structure_for_a_node</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">graph</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">node_id</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">parents_indxs</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">parents_labels</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">parents_vals</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.aux_build_time_scalar_indexing_structure_for_a_node" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.aux_build_transition_columns_filtering_structure">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.aux_build_transition_columns_filtering_structure">
-<code class="sig-name descname">aux_build_transition_columns_filtering_structure</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">graph</span></em>, <em class="sig-param"><span class="n">node_id</span></em>, <em class="sig-param"><span class="n">p_indxs</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.aux_build_transition_columns_filtering_structure" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">aux_build_transition_columns_filtering_structure</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">graph</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">node_id</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">p_indxs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.aux_build_transition_columns_filtering_structure" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
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-<dt id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.aux_build_transition_scalar_indexing_structure_for_a_node">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.aux_build_transition_scalar_indexing_structure_for_a_node">
-<code class="sig-name descname">aux_build_transition_scalar_indexing_structure_for_a_node</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">graph</span></em>, <em class="sig-param"><span class="n">node_id</span></em>, <em class="sig-param"><span class="n">parents_indxs</span></em>, <em class="sig-param"><span class="n">parents_labels</span></em>, <em class="sig-param"><span class="n">parents_values</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.aux_build_transition_scalar_indexing_structure_for_a_node" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">aux_build_transition_scalar_indexing_structure_for_a_node</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">graph</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">node_id</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">parents_indxs</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">parents_labels</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">parents_values</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.aux_build_transition_scalar_indexing_structure_for_a_node" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.setUpClass">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.setUpClass">
-<em class="property">classmethod </em><code class="sig-name descname">setUpClass</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.setUpClass" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">classmethod</span> </em><span class="sig-name descname"><span class="pre">setUpClass</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.setUpClass" title="Permalink to this definition">¶</a></dt>
 <dd><p>Hook method for setting up class fixture before running tests in the class.</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_add_edges">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_add_edges">
-<code class="sig-name descname">test_add_edges</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_add_edges" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_add_edges</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_add_edges" title="Permalink to this definition">¶</a></dt>
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-<dt id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_add_nodes">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_add_nodes">
-<code class="sig-name descname">test_add_nodes</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_add_nodes" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_add_nodes</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_add_nodes" title="Permalink to this definition">¶</a></dt>
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-<dt id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_build_p_combs_structure">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_build_p_combs_structure">
-<code class="sig-name descname">test_build_p_combs_structure</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_build_p_combs_structure" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_build_p_combs_structure</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_build_p_combs_structure" title="Permalink to this definition">¶</a></dt>
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 <dl class="py method">
-<dt id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_build_time_columns_filtering_structure_for_a_node">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_build_time_columns_filtering_structure_for_a_node">
-<code class="sig-name descname">test_build_time_columns_filtering_structure_for_a_node</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_build_time_columns_filtering_structure_for_a_node" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_build_time_columns_filtering_structure_for_a_node</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_build_time_columns_filtering_structure_for_a_node" title="Permalink to this definition">¶</a></dt>
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-<dt id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_build_time_scalar_indexing_structure_for_a_node">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_build_time_scalar_indexing_structure_for_a_node">
-<code class="sig-name descname">test_build_time_scalar_indexing_structure_for_a_node</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_build_time_scalar_indexing_structure_for_a_node" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_build_time_scalar_indexing_structure_for_a_node</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_build_time_scalar_indexing_structure_for_a_node" title="Permalink to this definition">¶</a></dt>
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-<dt id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_build_transition_columns_filtering_structure">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_build_transition_columns_filtering_structure">
-<code class="sig-name descname">test_build_transition_columns_filtering_structure</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_build_transition_columns_filtering_structure" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_build_transition_columns_filtering_structure</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_build_transition_columns_filtering_structure" title="Permalink to this definition">¶</a></dt>
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 <dl class="py method">
-<dt id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_build_transition_scalar_indexing_structure_for_a_node">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_build_transition_scalar_indexing_structure_for_a_node">
-<code class="sig-name descname">test_build_transition_scalar_indexing_structure_for_a_node</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_build_transition_scalar_indexing_structure_for_a_node" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_build_transition_scalar_indexing_structure_for_a_node</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_build_transition_scalar_indexing_structure_for_a_node" title="Permalink to this definition">¶</a></dt>
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-<dt id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_fast_init">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_fast_init">
-<code class="sig-name descname">test_fast_init</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_fast_init" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_fast_init</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_fast_init" title="Permalink to this definition">¶</a></dt>
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-<dt id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_get_node_indx">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_get_node_indx">
-<code class="sig-name descname">test_get_node_indx</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_get_node_indx" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_get_node_indx</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_get_node_indx" title="Permalink to this definition">¶</a></dt>
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-<dt id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_get_ordered_by_indx_set_of_parents">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_get_ordered_by_indx_set_of_parents">
-<code class="sig-name descname">test_get_ordered_by_indx_set_of_parents</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_get_ordered_by_indx_set_of_parents" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_get_ordered_by_indx_set_of_parents</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_get_ordered_by_indx_set_of_parents" title="Permalink to this definition">¶</a></dt>
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-<dt id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_get_parents_by_id">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_get_parents_by_id">
-<code class="sig-name descname">test_get_parents_by_id</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_get_parents_by_id" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_get_parents_by_id</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_get_parents_by_id" title="Permalink to this definition">¶</a></dt>
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-<dt id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_get_states_number">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_get_states_number">
-<code class="sig-name descname">test_get_states_number</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_get_states_number" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_get_states_number</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_get_states_number" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
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-<dt id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_init">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_init">
-<code class="sig-name descname">test_init</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_init" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_init</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_init" title="Permalink to this definition">¶</a></dt>
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 </dd></dl>
@@ -255,58 +259,58 @@
 <section id="module-PyCTBN.tests.structure_graph.test_sample_path">
 <span id="pyctbn-tests-structure-graph-test-sample-path-module"></span><h2>PyCTBN.tests.structure_graph.test_sample_path module<a class="headerlink" href="#module-PyCTBN.tests.structure_graph.test_sample_path" title="Permalink to this headline">¶</a></h2>
 <dl class="py class">
-<dt id="PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath">
-<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.tests.structure_graph.test_sample_path.</code><code class="sig-name descname">TestSamplePath</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">methodName</span><span class="o">=</span><span class="default_value">'runTest'</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span> </em><span class="sig-prename descclassname"><span class="pre">PyCTBN.tests.structure_graph.test_sample_path.</span></span><span class="sig-name descname"><span class="pre">TestSamplePath</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">methodName</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'runTest'</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">unittest.case.TestCase</span></code></p>
 <dl class="py method">
-<dt id="PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.setUpClass">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.setUpClass">
-<em class="property">classmethod </em><code class="sig-name descname">setUpClass</code><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; None<a class="headerlink" href="#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.setUpClass" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">classmethod</span> </em><span class="sig-name descname"><span class="pre">setUpClass</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; <span class="pre">None</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.setUpClass" title="Permalink to this definition">¶</a></dt>
 <dd><p>Hook method for setting up class fixture before running tests in the class.</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_buid_samplepath_no_concatenated_samples">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_buid_samplepath_no_concatenated_samples">
-<code class="sig-name descname">test_buid_samplepath_no_concatenated_samples</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_buid_samplepath_no_concatenated_samples" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_buid_samplepath_no_concatenated_samples</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_buid_samplepath_no_concatenated_samples" title="Permalink to this definition">¶</a></dt>
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-<dt id="PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_buid_samplepath_no_variables">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_buid_samplepath_no_variables">
-<code class="sig-name descname">test_buid_samplepath_no_variables</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_buid_samplepath_no_variables" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_buid_samplepath_no_variables</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_buid_samplepath_no_variables" title="Permalink to this definition">¶</a></dt>
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-<dt id="PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_build_saplepath_no_prior_net_structure">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_build_saplepath_no_prior_net_structure">
-<code class="sig-name descname">test_build_saplepath_no_prior_net_structure</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_build_saplepath_no_prior_net_structure" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_build_saplepath_no_prior_net_structure</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_build_saplepath_no_prior_net_structure" title="Permalink to this definition">¶</a></dt>
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-<dt id="PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_build_structure">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_build_structure">
-<code class="sig-name descname">test_build_structure</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_build_structure" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_build_structure</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_build_structure" title="Permalink to this definition">¶</a></dt>
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-<dt id="PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_build_structure_bad_sorter">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_build_structure_bad_sorter">
-<code class="sig-name descname">test_build_structure_bad_sorter</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_build_structure_bad_sorter" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_build_structure_bad_sorter</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_build_structure_bad_sorter" title="Permalink to this definition">¶</a></dt>
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-<dt id="PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_build_trajectories">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_build_trajectories">
-<code class="sig-name descname">test_build_trajectories</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_build_trajectories" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_build_trajectories</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_build_trajectories" title="Permalink to this definition">¶</a></dt>
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-<dt id="PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_init">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_init">
-<code class="sig-name descname">test_init</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_init" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_init</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_init" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_init_not_filled_dataframse">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_init_not_filled_dataframse">
-<code class="sig-name descname">test_init_not_filled_dataframse</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_init_not_filled_dataframse" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_init_not_filled_dataframse</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_init_not_filled_dataframse" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_init_not_initialized_importer">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_init_not_initialized_importer">
-<code class="sig-name descname">test_init_not_initialized_importer</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_init_not_initialized_importer" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_init_not_initialized_importer</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_init_not_initialized_importer" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </dd></dl>
@@ -315,27 +319,27 @@
 <section id="module-PyCTBN.tests.structure_graph.test_setofcims">
 <span id="pyctbn-tests-structure-graph-test-setofcims-module"></span><h2>PyCTBN.tests.structure_graph.test_setofcims module<a class="headerlink" href="#module-PyCTBN.tests.structure_graph.test_setofcims" title="Permalink to this headline">¶</a></h2>
 <dl class="py class">
-<dt id="PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims">
-<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.tests.structure_graph.test_setofcims.</code><code class="sig-name descname">TestSetOfCims</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">methodName</span><span class="o">=</span><span class="default_value">'runTest'</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span> </em><span class="sig-prename descclassname"><span class="pre">PyCTBN.tests.structure_graph.test_setofcims.</span></span><span class="sig-name descname"><span class="pre">TestSetOfCims</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">methodName</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'runTest'</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">unittest.case.TestCase</span></code></p>
 <dl class="py method">
-<dt id="PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.another_filtering_method">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.another_filtering_method">
-<code class="sig-name descname">another_filtering_method</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">p_combs</span></em>, <em class="sig-param"><span class="n">mask</span></em>, <em class="sig-param"><span class="n">parent_value</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.another_filtering_method" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">another_filtering_method</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">p_combs</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mask</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">parent_value</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.another_filtering_method" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.aux_test_build_cims">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.aux_test_build_cims">
-<code class="sig-name descname">aux_test_build_cims</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">node_id</span></em>, <em class="sig-param"><span class="n">p_values</span></em>, <em class="sig-param"><span class="n">node_states</span></em>, <em class="sig-param"><span class="n">p_combs</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.aux_test_build_cims" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">aux_test_build_cims</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">node_id</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">p_values</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">node_states</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">p_combs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.aux_test_build_cims" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.aux_test_init">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.aux_test_init">
-<code class="sig-name descname">aux_test_init</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">node_id</span></em>, <em class="sig-param"><span class="n">parents_states_number</span></em>, <em class="sig-param"><span class="n">node_states_number</span></em>, <em class="sig-param"><span class="n">p_combs</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.aux_test_init" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">aux_test_init</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">node_id</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">parents_states_number</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">node_states_number</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">p_combs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.aux_test_init" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.build_p_comb_structure_for_a_node">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.build_p_comb_structure_for_a_node">
-<code class="sig-name descname">build_p_comb_structure_for_a_node</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">parents_values</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.build_p_comb_structure_for_a_node" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">build_p_comb_structure_for_a_node</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">parents_values</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.build_p_comb_structure_for_a_node" title="Permalink to this definition">¶</a></dt>
 <dd><p>Builds the combinatory structure that contains the combinations of all the values contained in parents_values.</p>
 <dl class="simple">
 <dt>Parameters:</dt><dd><p>parents_values: the cardinalities of the nodes</p>
@@ -346,24 +350,24 @@
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.setUpClass">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.setUpClass">
-<em class="property">classmethod </em><code class="sig-name descname">setUpClass</code><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; None<a class="headerlink" href="#PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.setUpClass" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">classmethod</span> </em><span class="sig-name descname"><span class="pre">setUpClass</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; <span class="pre">None</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.setUpClass" title="Permalink to this definition">¶</a></dt>
 <dd><p>Hook method for setting up class fixture before running tests in the class.</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.test_build_cims">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.test_build_cims">
-<code class="sig-name descname">test_build_cims</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.test_build_cims" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_build_cims</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.test_build_cims" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.test_filter_cims_with_mask">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.test_filter_cims_with_mask">
-<code class="sig-name descname">test_filter_cims_with_mask</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.test_filter_cims_with_mask" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_filter_cims_with_mask</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.test_filter_cims_with_mask" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.test_init">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.test_init">
-<code class="sig-name descname">test_init</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.test_init" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_init</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.test_init" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </dd></dl>
@@ -372,53 +376,53 @@
 <section id="module-PyCTBN.tests.structure_graph.test_structure">
 <span id="pyctbn-tests-structure-graph-test-structure-module"></span><h2>PyCTBN.tests.structure_graph.test_structure module<a class="headerlink" href="#module-PyCTBN.tests.structure_graph.test_structure" title="Permalink to this headline">¶</a></h2>
 <dl class="py class">
-<dt id="PyCTBN.tests.structure_graph.test_structure.TestStructure">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_structure.TestStructure">
-<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.tests.structure_graph.test_structure.</code><code class="sig-name descname">TestStructure</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">methodName</span><span class="o">=</span><span class="default_value">'runTest'</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_structure.TestStructure" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span> </em><span class="sig-prename descclassname"><span class="pre">PyCTBN.tests.structure_graph.test_structure.</span></span><span class="sig-name descname"><span class="pre">TestStructure</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">methodName</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'runTest'</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_structure.TestStructure" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">unittest.case.TestCase</span></code></p>
 <dl class="py method">
-<dt id="PyCTBN.tests.structure_graph.test_structure.TestStructure.setUpClass">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_structure.TestStructure.setUpClass">
-<em class="property">classmethod </em><code class="sig-name descname">setUpClass</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_structure.TestStructure.setUpClass" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">classmethod</span> </em><span class="sig-name descname"><span class="pre">setUpClass</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_structure.TestStructure.setUpClass" title="Permalink to this definition">¶</a></dt>
 <dd><p>Hook method for setting up class fixture before running tests in the class.</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.structure_graph.test_structure.TestStructure.test_edges_operations">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_structure.TestStructure.test_edges_operations">
-<code class="sig-name descname">test_edges_operations</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_structure.TestStructure.test_edges_operations" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_edges_operations</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_structure.TestStructure.test_edges_operations" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.structure_graph.test_structure.TestStructure.test_equality">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_structure.TestStructure.test_equality">
-<code class="sig-name descname">test_equality</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_structure.TestStructure.test_equality" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_equality</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_structure.TestStructure.test_equality" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.structure_graph.test_structure.TestStructure.test_get_node_id">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_structure.TestStructure.test_get_node_id">
-<code class="sig-name descname">test_get_node_id</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_structure.TestStructure.test_get_node_id" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_get_node_id</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_structure.TestStructure.test_get_node_id" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.structure_graph.test_structure.TestStructure.test_get_node_indx">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_structure.TestStructure.test_get_node_indx">
-<code class="sig-name descname">test_get_node_indx</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_structure.TestStructure.test_get_node_indx" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_get_node_indx</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_structure.TestStructure.test_get_node_indx" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.structure_graph.test_structure.TestStructure.test_get_positional_node_indx">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_structure.TestStructure.test_get_positional_node_indx">
-<code class="sig-name descname">test_get_positional_node_indx</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_structure.TestStructure.test_get_positional_node_indx" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_get_positional_node_indx</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_structure.TestStructure.test_get_positional_node_indx" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.structure_graph.test_structure.TestStructure.test_get_states_number">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_structure.TestStructure.test_get_states_number">
-<code class="sig-name descname">test_get_states_number</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_structure.TestStructure.test_get_states_number" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_get_states_number</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_structure.TestStructure.test_get_states_number" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.structure_graph.test_structure.TestStructure.test_init">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_structure.TestStructure.test_init">
-<code class="sig-name descname">test_init</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_structure.TestStructure.test_init" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_init</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_structure.TestStructure.test_init" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.structure_graph.test_structure.TestStructure.test_repr">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_structure.TestStructure.test_repr">
-<code class="sig-name descname">test_repr</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_structure.TestStructure.test_repr" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_repr</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_structure.TestStructure.test_repr" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </dd></dl>
@@ -427,22 +431,23 @@
 <section id="module-PyCTBN.tests.structure_graph.test_trajectory">
 <span id="pyctbn-tests-structure-graph-test-trajectory-module"></span><h2>PyCTBN.tests.structure_graph.test_trajectory module<a class="headerlink" href="#module-PyCTBN.tests.structure_graph.test_trajectory" title="Permalink to this headline">¶</a></h2>
 <dl class="py class">
-<dt id="PyCTBN.tests.structure_graph.test_trajectory.TestTrajectory">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_trajectory.TestTrajectory">
-<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.tests.structure_graph.test_trajectory.</code><code class="sig-name descname">TestTrajectory</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">methodName</span><span class="o">=</span><span class="default_value">'runTest'</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_trajectory.TestTrajectory" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span> </em><span class="sig-prename descclassname"><span class="pre">PyCTBN.tests.structure_graph.test_trajectory.</span></span><span class="sig-name descname"><span class="pre">TestTrajectory</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">methodName</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'runTest'</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_trajectory.TestTrajectory" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">unittest.case.TestCase</span></code></p>
 <dl class="py method">
-<dt id="PyCTBN.tests.structure_graph.test_trajectory.TestTrajectory.setUpClass">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_trajectory.TestTrajectory.setUpClass">
-<em class="property">classmethod </em><code class="sig-name descname">setUpClass</code><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; None<a class="headerlink" href="#PyCTBN.tests.structure_graph.test_trajectory.TestTrajectory.setUpClass" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">classmethod</span> </em><span class="sig-name descname"><span class="pre">setUpClass</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; <span class="pre">None</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_trajectory.TestTrajectory.setUpClass" title="Permalink to this definition">¶</a></dt>
 <dd><p>Hook method for setting up class fixture before running tests in the class.</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.structure_graph.test_trajectory.TestTrajectory.test_init">
+<dt class="sig sig-object py" id="PyCTBN.tests.structure_graph.test_trajectory.TestTrajectory.test_init">
-<code class="sig-name descname">test_init</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_trajectory.TestTrajectory.test_init" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_init</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.structure_graph.test_trajectory.TestTrajectory.test_init" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </dd></dl>
 
+
 </section>
 <section id="module-PyCTBN.tests.structure_graph">
 <span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-PyCTBN.tests.structure_graph" title="Permalink to this headline">¶</a></h2>
@@ -477,6 +482,9 @@
             FILE_SUFFIX:'.html',
             HAS_SOURCE:  true
         };
+    </script>
+    <script type="text/javascript" src="_static/documentation_options.js">
+
     </script>
     <script type="text/javascript" src="_static/jquery.js">
 
@@ -487,9 +495,6 @@
     <script type="text/javascript" src="_static/doctools.js">
 
     </script>
-    <script type="text/javascript" src="_static/language_data.js">
-
-    </script>
 
   
 

docs/PyCTBN.tests.utility.html

@@ -19,6 +19,10 @@
     <link rel="stylesheet" href="_static/css/pdj.css" type="text/css" />
 
   
+    <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
+  
+    <link rel="stylesheet" href="_static/css/pdj.css" type="text/css" />
+  
 
   
 
@@ -120,27 +124,27 @@
 <section id="module-PyCTBN.tests.utility.test_cache">
 <span id="pyctbn-tests-utility-test-cache-module"></span><h2>PyCTBN.tests.utility.test_cache module<a class="headerlink" href="#module-PyCTBN.tests.utility.test_cache" title="Permalink to this headline">¶</a></h2>
 <dl class="py class">
-<dt id="PyCTBN.tests.utility.test_cache.TestCache">
+<dt class="sig sig-object py" id="PyCTBN.tests.utility.test_cache.TestCache">
-<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.tests.utility.test_cache.</code><code class="sig-name descname">TestCache</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">methodName</span><span class="o">=</span><span class="default_value">'runTest'</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_cache.TestCache" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span> </em><span class="sig-prename descclassname"><span class="pre">PyCTBN.tests.utility.test_cache.</span></span><span class="sig-name descname"><span class="pre">TestCache</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">methodName</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'runTest'</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_cache.TestCache" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">unittest.case.TestCase</span></code></p>
 <dl class="py method">
-<dt id="PyCTBN.tests.utility.test_cache.TestCache.test_clear">
+<dt class="sig sig-object py" id="PyCTBN.tests.utility.test_cache.TestCache.test_clear">
-<code class="sig-name descname">test_clear</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_cache.TestCache.test_clear" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_clear</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_cache.TestCache.test_clear" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.utility.test_cache.TestCache.test_find">
+<dt class="sig sig-object py" id="PyCTBN.tests.utility.test_cache.TestCache.test_find">
-<code class="sig-name descname">test_find</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_cache.TestCache.test_find" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_find</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_cache.TestCache.test_find" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.utility.test_cache.TestCache.test_init">
+<dt class="sig sig-object py" id="PyCTBN.tests.utility.test_cache.TestCache.test_init">
-<code class="sig-name descname">test_init</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_cache.TestCache.test_init" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_init</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_cache.TestCache.test_init" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.utility.test_cache.TestCache.test_put">
+<dt class="sig sig-object py" id="PyCTBN.tests.utility.test_cache.TestCache.test_put">
-<code class="sig-name descname">test_put</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_cache.TestCache.test_put" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_put</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_cache.TestCache.test_put" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </dd></dl>
@@ -149,108 +153,108 @@
 <section id="module-PyCTBN.tests.utility.test_json_importer">
 <span id="pyctbn-tests-utility-test-json-importer-module"></span><h2>PyCTBN.tests.utility.test_json_importer module<a class="headerlink" href="#module-PyCTBN.tests.utility.test_json_importer" title="Permalink to this headline">¶</a></h2>
 <dl class="py class">
-<dt id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter">
+<dt class="sig sig-object py" id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter">
-<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.tests.utility.test_json_importer.</code><code class="sig-name descname">TestJsonImporter</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">methodName</span><span class="o">=</span><span class="default_value">'runTest'</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span> </em><span class="sig-prename descclassname"><span class="pre">PyCTBN.tests.utility.test_json_importer.</span></span><span class="sig-name descname"><span class="pre">TestJsonImporter</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">methodName</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'runTest'</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">unittest.case.TestCase</span></code></p>
 <dl class="py method">
-<dt id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.ordered">
+<dt class="sig sig-object py" id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.ordered">
-<code class="sig-name descname">ordered</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">obj</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.ordered" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">ordered</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">obj</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.ordered" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.setUpClass">
+<dt class="sig sig-object py" id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.setUpClass">
-<em class="property">classmethod </em><code class="sig-name descname">setUpClass</code><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; None<a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.setUpClass" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">classmethod</span> </em><span class="sig-name descname"><span class="pre">setUpClass</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; <span class="pre">None</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.setUpClass" title="Permalink to this definition">¶</a></dt>
 <dd><p>Hook method for setting up class fixture before running tests in the class.</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_build_sorter">
+<dt class="sig sig-object py" id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_build_sorter">
-<code class="sig-name descname">test_build_sorter</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_build_sorter" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_build_sorter</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_build_sorter" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
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-<dt id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_clear_concatenated_frame">
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-<code class="sig-name descname">test_clear_concatenated_frame</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_clear_concatenated_frame" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_clear_concatenated_frame</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_clear_concatenated_frame" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
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-<dt id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_clear_data_frame_list">
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-<code class="sig-name descname">test_clear_data_frame_list</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_clear_data_frame_list" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_clear_data_frame_list</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_clear_data_frame_list" title="Permalink to this definition">¶</a></dt>
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-<dt id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_compute_row_delta_in_all_frames">
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-<code class="sig-name descname">test_compute_row_delta_in_all_frames</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_compute_row_delta_in_all_frames" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_compute_row_delta_in_all_frames</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_compute_row_delta_in_all_frames" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
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-<dt id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_compute_row_delta_in_all_frames_not_init_sorter">
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-<code class="sig-name descname">test_compute_row_delta_in_all_frames_not_init_sorter</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_compute_row_delta_in_all_frames_not_init_sorter" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_compute_row_delta_in_all_frames_not_init_sorter</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_compute_row_delta_in_all_frames_not_init_sorter" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
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-<dt id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_compute_row_delta_single_samples_frame">
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-<code class="sig-name descname">test_compute_row_delta_single_samples_frame</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_compute_row_delta_single_samples_frame" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_compute_row_delta_single_samples_frame</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_compute_row_delta_single_samples_frame" title="Permalink to this definition">¶</a></dt>
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-<dt id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_dataset_id">
+<dt class="sig sig-object py" id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_dataset_id">
-<code class="sig-name descname">test_dataset_id</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_dataset_id" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_dataset_id</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_dataset_id" title="Permalink to this definition">¶</a></dt>
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+<dt class="sig sig-object py" id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_file_path">
-<code class="sig-name descname">test_file_path</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_file_path" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_file_path</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_file_path" title="Permalink to this definition">¶</a></dt>
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+<dt class="sig sig-object py" id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_import_data">
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+<span class="sig-name descname"><span class="pre">test_import_data</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_import_data" title="Permalink to this definition">¶</a></dt>
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-<dt id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_import_sampled_cims">
+<dt class="sig sig-object py" id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_import_sampled_cims">
-<code class="sig-name descname">test_import_sampled_cims</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_import_sampled_cims" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_import_sampled_cims</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_import_sampled_cims" title="Permalink to this definition">¶</a></dt>
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-<dt id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_import_structure">
+<dt class="sig sig-object py" id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_import_structure">
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+<span class="sig-name descname"><span class="pre">test_import_structure</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_import_structure" title="Permalink to this definition">¶</a></dt>
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-<dt id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_import_variables">
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+<span class="sig-name descname"><span class="pre">test_import_variables</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_import_variables" title="Permalink to this definition">¶</a></dt>
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 <dl class="py method">
-<dt id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_init">
+<dt class="sig sig-object py" id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_init">
-<code class="sig-name descname">test_init</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_init" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_init</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_init" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_normalize_trajectories">
+<dt class="sig sig-object py" id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_normalize_trajectories">
-<code class="sig-name descname">test_normalize_trajectories</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_normalize_trajectories" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_normalize_trajectories</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_normalize_trajectories" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_normalize_trajectories_wrong_indx">
+<dt class="sig sig-object py" id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_normalize_trajectories_wrong_indx">
-<code class="sig-name descname">test_normalize_trajectories_wrong_indx</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_normalize_trajectories_wrong_indx" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_normalize_trajectories_wrong_indx</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_normalize_trajectories_wrong_indx" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_normalize_trajectories_wrong_key">
+<dt class="sig sig-object py" id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_normalize_trajectories_wrong_key">
-<code class="sig-name descname">test_normalize_trajectories_wrong_key</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_normalize_trajectories_wrong_key" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_normalize_trajectories_wrong_key</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_normalize_trajectories_wrong_key" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_read_json_file_found">
+<dt class="sig sig-object py" id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_read_json_file_found">
-<code class="sig-name descname">test_read_json_file_found</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_read_json_file_found" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_read_json_file_found</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_read_json_file_found" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_read_json_file_not_found">
+<dt class="sig sig-object py" id="PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_read_json_file_not_found">
-<code class="sig-name descname">test_read_json_file_not_found</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_read_json_file_not_found" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_read_json_file_not_found</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_read_json_file_not_found" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </dd></dl>
@@ -259,28 +263,28 @@
 <section id="module-PyCTBN.tests.utility.test_sample_importer">
 <span id="pyctbn-tests-utility-test-sample-importer-module"></span><h2>PyCTBN.tests.utility.test_sample_importer module<a class="headerlink" href="#module-PyCTBN.tests.utility.test_sample_importer" title="Permalink to this headline">¶</a></h2>
 <dl class="py class">
-<dt id="PyCTBN.tests.utility.test_sample_importer.TestSampleImporter">
+<dt class="sig sig-object py" id="PyCTBN.tests.utility.test_sample_importer.TestSampleImporter">
-<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.tests.utility.test_sample_importer.</code><code class="sig-name descname">TestSampleImporter</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">methodName</span><span class="o">=</span><span class="default_value">'runTest'</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_sample_importer.TestSampleImporter" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span> </em><span class="sig-prename descclassname"><span class="pre">PyCTBN.tests.utility.test_sample_importer.</span></span><span class="sig-name descname"><span class="pre">TestSampleImporter</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">methodName</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'runTest'</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_sample_importer.TestSampleImporter" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">unittest.case.TestCase</span></code></p>
 <dl class="py method">
-<dt id="PyCTBN.tests.utility.test_sample_importer.TestSampleImporter.ordered">
+<dt class="sig sig-object py" id="PyCTBN.tests.utility.test_sample_importer.TestSampleImporter.ordered">
-<code class="sig-name descname">ordered</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">obj</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_sample_importer.TestSampleImporter.ordered" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">ordered</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">obj</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_sample_importer.TestSampleImporter.ordered" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.utility.test_sample_importer.TestSampleImporter.setUpClass">
+<dt class="sig sig-object py" id="PyCTBN.tests.utility.test_sample_importer.TestSampleImporter.setUpClass">
-<em class="property">classmethod </em><code class="sig-name descname">setUpClass</code><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; None<a class="headerlink" href="#PyCTBN.tests.utility.test_sample_importer.TestSampleImporter.setUpClass" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">classmethod</span> </em><span class="sig-name descname"><span class="pre">setUpClass</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span> &#x2192; <span class="pre">None</span><a class="headerlink" href="#PyCTBN.tests.utility.test_sample_importer.TestSampleImporter.setUpClass" title="Permalink to this definition">¶</a></dt>
 <dd><p>Hook method for setting up class fixture before running tests in the class.</p>
 </dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.utility.test_sample_importer.TestSampleImporter.test_init">
+<dt class="sig sig-object py" id="PyCTBN.tests.utility.test_sample_importer.TestSampleImporter.test_init">
-<code class="sig-name descname">test_init</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_sample_importer.TestSampleImporter.test_init" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_init</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_sample_importer.TestSampleImporter.test_init" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py method">
-<dt id="PyCTBN.tests.utility.test_sample_importer.TestSampleImporter.test_order">
+<dt class="sig sig-object py" id="PyCTBN.tests.utility.test_sample_importer.TestSampleImporter.test_order">
-<code class="sig-name descname">test_order</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_sample_importer.TestSampleImporter.test_order" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">test_order</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.utility.test_sample_importer.TestSampleImporter.test_order" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </dd></dl>
@@ -319,6 +323,9 @@
             FILE_SUFFIX:'.html',
             HAS_SOURCE:  true
         };
+    </script>
+    <script type="text/javascript" src="_static/documentation_options.js">
+
     </script>
     <script type="text/javascript" src="_static/jquery.js">
 
@@ -329,9 +336,6 @@
     <script type="text/javascript" src="_static/doctools.js">
 
     </script>
-    <script type="text/javascript" src="_static/language_data.js">
-
-    </script>
 
   
 

docs/_sources/PyCTBN.PyCTBN.structure_graph.rst.txt

@@ -12,6 +12,14 @@ PyCTBN.PyCTBN.structure\_graph.conditional\_intensity\_matrix module
    :undoc-members:
    :show-inheritance:
 
+PyCTBN.PyCTBN.structure\_graph.network\_generator module
+--------------------------------------------------------
+
+.. automodule:: PyCTBN.PyCTBN.structure_graph.network_generator
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
 PyCTBN.PyCTBN.structure\_graph.network\_graph module
 ----------------------------------------------------
 
@@ -52,6 +60,14 @@ PyCTBN.PyCTBN.structure\_graph.trajectory module
    :undoc-members:
    :show-inheritance:
 
+PyCTBN.PyCTBN.structure\_graph.trajectory\_generator module
+-----------------------------------------------------------
+
+.. automodule:: PyCTBN.PyCTBN.structure_graph.trajectory_generator
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
 Module contents
 ---------------
 

docs/_sources/PyCTBN.PyCTBN.utility.rst.txt

@@ -4,6 +4,14 @@ PyCTBN.PyCTBN.utility package
 Submodules
 ----------
 
+PyCTBN.PyCTBN.utility.abstract\_exporter module
+-----------------------------------------------
+
+.. automodule:: PyCTBN.PyCTBN.utility.abstract_exporter
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
 PyCTBN.PyCTBN.utility.abstract\_importer module
 -----------------------------------------------
 
@@ -20,6 +28,14 @@ PyCTBN.PyCTBN.utility.cache module
    :undoc-members:
    :show-inheritance:
 
+PyCTBN.PyCTBN.utility.json\_exporter module
+-------------------------------------------
+
+.. automodule:: PyCTBN.PyCTBN.utility.json_exporter
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
 PyCTBN.PyCTBN.utility.json\_importer module
 -------------------------------------------
 

docs/_sources/PyCTBN.rst.txt

@@ -8,10 +8,27 @@ Subpackages
    :maxdepth: 4
 
    PyCTBN.PyCTBN
+   PyCTBN.tests
 
 Submodules
 ----------
 
+PyCTBN.basic\_main module
+-------------------------
+
+.. automodule:: PyCTBN.basic_main
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+PyCTBN.setup module
+-------------------
+
+.. automodule:: PyCTBN.setup
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
 Module contents
 ---------------
 

docs/_sources/PyCTBN.tests.structure_graph.rst.txt

@@ -12,6 +12,14 @@ PyCTBN.tests.structure\_graph.test\_cim module
    :undoc-members:
    :show-inheritance:
 
+PyCTBN.tests.structure\_graph.test\_networkgenerator module
+-----------------------------------------------------------
+
+.. automodule:: PyCTBN.tests.structure_graph.test_networkgenerator
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
 PyCTBN.tests.structure\_graph.test\_networkgraph module
 -------------------------------------------------------
 
@@ -52,6 +60,14 @@ PyCTBN.tests.structure\_graph.test\_trajectory module
    :undoc-members:
    :show-inheritance:
 
+PyCTBN.tests.structure\_graph.test\_trajectorygenerator module
+--------------------------------------------------------------
+
+.. automodule:: PyCTBN.tests.structure_graph.test_trajectorygenerator
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
 Module contents
 ---------------
 

docs/_sources/example.rst.txt

@@ -0,0 +1,7 @@
+example module
+==============
+
+.. automodule:: example
+   :members:
+   :undoc-members:
+   :show-inheritance:

docs/_sources/modules.rst.txt

@@ -4,5 +4,6 @@ PyCTBN
 .. toctree::
    :maxdepth: 4
 
-   PyCTBN.PyCTBN
+   PyCTBN
-   examples
+   example
+   setup

docs/_static/basic.css

@@ -4,7 +4,7 @@
  *
  * Sphinx stylesheet -- basic theme.
  *
- * :copyright: Copyright 2007-2020 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2021 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
  */
@@ -130,7 +130,7 @@ ul.search li a {
     font-weight: bold;
 }
 
-ul.search li div.context {
+ul.search li p.context {
     color: #888;
     margin: 2px 0 0 30px;
     text-align: left;
@@ -277,25 +277,25 @@ p.rubric {
     font-weight: bold;
 }
 
-img.align-left, .figure.align-left, object.align-left {
+img.align-left, figure.align-left, .figure.align-left, object.align-left {
     clear: left;
     float: left;
     margin-right: 1em;
 }
 
-img.align-right, .figure.align-right, object.align-right {
+img.align-right, figure.align-right, .figure.align-right, object.align-right {
     clear: right;
     float: right;
     margin-left: 1em;
 }
 
-img.align-center, .figure.align-center, object.align-center {
+img.align-center, figure.align-center, .figure.align-center, object.align-center {
   display: block;
   margin-left: auto;
   margin-right: auto;
 }
 
-img.align-default, .figure.align-default {
+img.align-default, figure.align-default, .figure.align-default {
   display: block;
   margin-left: auto;
   margin-right: auto;
@@ -319,7 +319,8 @@ img.align-default, .figure.align-default {
 
 /* -- sidebars -------------------------------------------------------------- */
 
-div.sidebar {
+div.sidebar,
+aside.sidebar {
     margin: 0 0 0.5em 1em;
     border: 1px solid #ddb;
     padding: 7px;
@@ -377,12 +378,14 @@ div.body p.centered {
 /* -- content of sidebars/topics/admonitions -------------------------------- */
 
 div.sidebar > :last-child,
+aside.sidebar > :last-child,
 div.topic > :last-child,
 div.admonition > :last-child {
     margin-bottom: 0;
 }
 
 div.sidebar::after,
+aside.sidebar::after,
 div.topic::after,
 div.admonition::after,
 blockquote::after {
@@ -455,20 +458,22 @@ td > :last-child {
 
 /* -- figures --------------------------------------------------------------- */
 
-div.figure {
+div.figure, figure {
     margin: 0.5em;
     padding: 0.5em;
 }
 
-div.figure p.caption {
+div.figure p.caption, figcaption {
     padding: 0.3em;
 }
 
-div.figure p.caption span.caption-number {
+div.figure p.caption span.caption-number,
+figcaption span.caption-number {
     font-style: italic;
 }
 
-div.figure p.caption span.caption-text {
+div.figure p.caption span.caption-text,
+figcaption span.caption-text {
 }
 
 /* -- field list styles ----------------------------------------------------- */
@@ -503,6 +508,63 @@ table.hlist td {
     vertical-align: top;
 }
 
+/* -- object description styles --------------------------------------------- */
+
+.sig {
+	font-family: 'Consolas', 'Menlo', 'DejaVu Sans Mono', 'Bitstream Vera Sans Mono', monospace;
+}
+
+.sig-name, code.descname {
+    background-color: transparent;
+    font-weight: bold;
+}
+
+.sig-name {
+	font-size: 1.1em;
+}
+
+code.descname {
+    font-size: 1.2em;
+}
+
+.sig-prename, code.descclassname {
+    background-color: transparent;
+}
+
+.optional {
+    font-size: 1.3em;
+}
+
+.sig-paren {
+    font-size: larger;
+}
+
+.sig-param.n {
+	font-style: italic;
+}
+
+/* C++ specific styling */
+
+.sig-inline.c-texpr,
+.sig-inline.cpp-texpr {
+	font-family: unset;
+}
+
+.sig.c   .k, .sig.c   .kt,
+.sig.cpp .k, .sig.cpp .kt {
+	color: #0033B3;
+}
+
+.sig.c   .m,
+.sig.cpp .m {
+	color: #1750EB;
+}
+
+.sig.c   .s, .sig.c   .sc,
+.sig.cpp .s, .sig.cpp .sc {
+	color: #067D17;
+}
+
 
 /* -- other body styles ----------------------------------------------------- */
 
@@ -629,14 +691,6 @@ dl.glossary dt {
     font-size: 1.1em;
 }
 
-.optional {
-    font-size: 1.3em;
-}
-
-.sig-paren {
-    font-size: larger;
-}
-
 .versionmodified {
     font-style: italic;
 }
@@ -767,6 +821,10 @@ table.highlighttable td.linenos,
 span.linenos,
 div.doctest > div.highlight span.gp {  /* gp: Generic.Prompt */
   user-select: none;
+  -webkit-user-select: text; /* Safari fallback only */
+  -webkit-user-select: none; /* Chrome/Safari */
+  -moz-user-select: none; /* Firefox */
+  -ms-user-select: none; /* IE10+ */
 }
 
 div.code-block-caption span.caption-number {
@@ -781,16 +839,6 @@ div.literal-block-wrapper {
     margin: 1em 0;
 }
 
-code.descname {
-    background-color: transparent;
-    font-weight: bold;
-    font-size: 1.2em;
-}
-
-code.descclassname {
-    background-color: transparent;
-}
-
 code.xref, a code {
     background-color: transparent;
     font-weight: bold;

docs/_static/doctools.js

@@ -4,7 +4,7 @@
  *
  * Sphinx JavaScript utilities for all documentation.
  *
- * :copyright: Copyright 2007-2020 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2021 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
  */
@@ -29,9 +29,14 @@ if (!window.console || !console.firebug) {
 
 /**
  * small helper function to urldecode strings
+ *
+ * See https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/decodeURIComponent#Decoding_query_parameters_from_a_URL
  */
 jQuery.urldecode = function(x) {
-  return decodeURIComponent(x).replace(/\+/g, ' ');
+  if (!x) {
+    return x
+  }
+  return decodeURIComponent(x.replace(/\+/g, ' '));
 };
 
 /**

docs/_static/language_data.js

@@ -5,7 +5,7 @@
  * This script contains the language-specific data used by searchtools.js,
  * namely the list of stopwords, stemmer, scorer and splitter.
  *
- * :copyright: Copyright 2007-2020 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2021 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
  */
@@ -13,7 +13,8 @@
 var stopwords = ["a","and","are","as","at","be","but","by","for","if","in","into","is","it","near","no","not","of","on","or","such","that","the","their","then","there","these","they","this","to","was","will","with"];
 
 
-/* Non-minified version JS is _stemmer.js if file is provided */ 
+/* Non-minified version is copied as a separate JS file, is available */
+
 /**
  * Porter Stemmer
  */
@@ -199,7 +200,6 @@ var Stemmer = function() {
 
 
 
-
 var splitChars = (function() {
     var result = {};
     var singles = [96, 180, 187, 191, 215, 247, 749, 885, 903, 907, 909, 930, 1014, 1648,

docs/_static/pygments.css

@@ -1,7 +1,7 @@
-pre { line-height: 125%; }
+pre { line-height: 125%; margin: 0; }
-td.linenos .normal { color: inherit; background-color: transparent; padding-left: 5px; padding-right: 5px; }
+td.linenos pre { color: #000000; background-color: #f0f0f0; padding: 0 5px 0 5px; }
-span.linenos { color: inherit; background-color: transparent; padding-left: 5px; padding-right: 5px; }
+span.linenos { color: #000000; background-color: #f0f0f0; padding: 0 5px 0 5px; }
-td.linenos .special { color: #000000; background-color: #ffffc0; padding-left: 5px; padding-right: 5px; }
+td.linenos pre.special { color: #000000; background-color: #ffffc0; padding: 0 5px 0 5px; }
-span.linenos.special { color: #000000; background-color: #ffffc0; padding-left: 5px; padding-right: 5px; }
+span.linenos.special { color: #000000; background-color: #ffffc0; padding: 0 5px 0 5px; }
 .highlight .hll { background-color: #ffffcc }
 .highlight { background: #ffffff; }

docs/_static/searchtools.js

@@ -4,7 +4,7 @@
  *
  * Sphinx JavaScript utilities for the full-text search.
  *
- * :copyright: Copyright 2007-2020 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2021 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
  */
@@ -248,7 +248,7 @@ var Search = {
       // results left, load the summary and display it
       if (results.length) {
         var item = results.pop();
-        var listItem = $('<li style="display:none"></li>');
+        var listItem = $('<li></li>');
         var requestUrl = "";
         var linkUrl = "";
         if (DOCUMENTATION_OPTIONS.BUILDER === 'dirhtml') {
@@ -273,9 +273,9 @@ var Search = {
         if (item[3]) {
           listItem.append($('<span> (' + item[3] + ')</span>'));
           Search.output.append(listItem);
-          listItem.slideDown(5, function() {
+          setTimeout(function() {
             displayNextItem();
-          });
+          }, 5);
         } else if (DOCUMENTATION_OPTIONS.HAS_SOURCE) {
           $.ajax({url: requestUrl,
                   dataType: "text",
@@ -285,16 +285,16 @@ var Search = {
                       listItem.append(Search.makeSearchSummary(data, searchterms, hlterms));
                     }
                     Search.output.append(listItem);
-                    listItem.slideDown(5, function() {
+                    setTimeout(function() {
                       displayNextItem();
-                    });
+                    }, 5);
                   }});
         } else {
           // no source available, just display title
           Search.output.append(listItem);
-          listItem.slideDown(5, function() {
+          setTimeout(function() {
             displayNextItem();
-          });
+          }, 5);
         }
       }
       // search finished, update title and status message
@@ -379,6 +379,13 @@ var Search = {
     return results;
   },
 
+  /**
+   * See https://developer.mozilla.org/en-US/docs/Web/JavaScript/Guide/Regular_Expressions
+   */
+  escapeRegExp : function(string) {
+    return string.replace(/[.*+\-?^${}()|[\]\\]/g, '\\$&'); // $& means the whole matched string
+  },
+
   /**
    * search for full-text terms in the index
    */
@@ -402,13 +409,14 @@ var Search = {
       ];
       // add support for partial matches
       if (word.length > 2) {
+        var word_regex = this.escapeRegExp(word);
         for (var w in terms) {
-          if (w.match(word) && !terms[word]) {
+          if (w.match(word_regex) && !terms[word]) {
             _o.push({files: terms[w], score: Scorer.partialTerm})
           }
         }
         for (var w in titleterms) {
-          if (w.match(word) && !titleterms[word]) {
+          if (w.match(word_regex) && !titleterms[word]) {
               _o.push({files: titleterms[w], score: Scorer.partialTitle})
           }
         }
@@ -501,7 +509,7 @@ var Search = {
     var excerpt = ((start > 0) ? '...' : '') +
       $.trim(text.substr(start, 240)) +
       ((start + 240 - text.length) ? '...' : '');
-    var rv = $('<div class="context"></div>').text(excerpt);
+    var rv = $('<p class="context"></p>').text(excerpt);
     $.each(hlwords, function() {
       rv = rv.highlightText(this, 'highlighted');
     });

docs/basic_main.html

@@ -19,6 +19,10 @@
     <link rel="stylesheet" href="_static/css/pdj.css" type="text/css" />
 
   
+    <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
+  
+    <link rel="stylesheet" href="_static/css/pdj.css" type="text/css" />
+  
 
   
 
@@ -144,6 +148,9 @@
             FILE_SUFFIX:'.html',
             HAS_SOURCE:  true
         };
+    </script>
+    <script type="text/javascript" src="_static/documentation_options.js">
+
     </script>
     <script type="text/javascript" src="_static/jquery.js">
 
@@ -154,9 +161,6 @@
     <script type="text/javascript" src="_static/doctools.js">
 
     </script>
-    <script type="text/javascript" src="_static/language_data.js">
-
-    </script>
 
   
 

docs/example.html

@@ -0,0 +1,188 @@
+
+
+
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.1//EN" "http://www.w3.org/TR/xhtml11/DTD/xhtml11.dtd">
+<html xml:lang="" lang="" version="-//W3C//DTD XHTML 1.1//EN" xmlns="http://www.w3.org/1999/xhtml">
+  <head>
+    <meta charset="utf-8">
+    <meta name="viewport" content="width=device-width, initial-scale=1.0">
+
+  
+  <title>example module &mdash; PyCTBN 2.0 documentation</title>
+  
+
+  
+
+  
+
+    <link href='https://fonts.googleapis.com/css?family=Lato:400,700,400italic,700italic|Roboto+Slab:400,700|Inconsolata:400,700' rel='stylesheet' type='text/css'/>
+    <link rel="stylesheet" href="_static/css/pdj.css" type="text/css" />
+
+  
+    <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
+  
+    <link rel="stylesheet" href="_static/css/pdj.css" type="text/css" />
+  
+
+  
+
+  
+        <link rel="index" title="Index"
+              href="genindex.html"/>
+        <link rel="search" title="Search" href="search.html"/>
+    <link rel="top" title="PyCTBN 2.0 documentation" href="index.html"/>
+
+    <meta http-equiv="content-type" content="text/html; charset=utf-8" />
+    <meta http-equiv="cache-control" content="public" />
+    <meta name="robots" content="follow, all" />
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+    <!-- Add jQuery library -->
+    <script type="text/javascript" src="http://code.jquery.com/jquery-latest.min.js"></script>
+    <script src="https://cdnjs.cloudflare.com/ajax/libs/modernizr/2.6.2/modernizr.min.js"></script>
+
+  </head>
+
+  <body class="wy-body-for-nav" role="document">
+
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-nav-search">
+        <a href="index.html" class="fa fa-home"> PyCTBN </a>
+        <div role="search">
+	  <form id ="rtd-search-form" class="wy-form"
+		action="search.html" method="get">
+	    <input type="text" name="q" placeholder="Search docs" />
+	    <input type="hidden" name="check_keywords" value="yes" />
+	    <input type="hidden" name="area" value="default" />
+	  </form>
+	</div>
+      </div>
+
+      <div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="main navigation">
+	
+          
+          
+              <p class="caption"><span class="caption-text">Contents:</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="PyCTBN.PyCTBN.html">PyCTBN.PyCTBN package</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.html#subpackages">Subpackages</a></li>
+<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.html#module-PyCTBN.PyCTBN">Module contents</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="examples.html">Examples</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="examples.html#installation-usage">Installation/Usage</a></li>
+<li class="toctree-l2"><a class="reference internal" href="examples.html#implementing-your-own-data-importer">Implementing your own data importer</a></li>
+<li class="toctree-l2"><a class="reference internal" href="examples.html#parameters-estimation-example">Parameters Estimation Example</a></li>
+<li class="toctree-l2"><a class="reference internal" href="examples.html#structure-estimation-example">Structure Estimation Example</a></li>
+</ul>
+</li>
+</ul>
+
+          
+        
+
+      </div>
+      &nbsp;
+    </nav>
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap">
+
+      <nav class="wy-nav-top" id="barra-mobile" role="navigation" aria-label="top navigation">
+        <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+        <a href="#">Porão do Juca</a>
+      </nav>
+
+      <div class="wy-nav-content">
+	<div class="fundo-claro">
+	</div>
+	<div class="fundo-escuro">
+	</div>
+
+        <div class="rst-content">
+          <div role="navigation" aria-label="breadcrumbs navigation">
+	    
+	    <!-- <ul class="wy-breadcrumbs"> -->
+	    <!--   <li><a href="#">Docs</a> &raquo;</li> -->
+
+	    <!--   <li>Features</li> -->
+	    <!--   <li class="wy-breadcrumbs-aside"> -->
+
+	    <!-- 	<a href="_sources/index.txt" rel="nofollow"> View page source</a> -->
+
+	    <!--   </li> -->
+	    <!-- </ul> -->
+	    <!-- <hr/> -->
+	  </div>
+
+          <div role="main" class="">
+
+	    <div id="content" class="hfeed entry-container hentry">
+  <div class="section" id="module-example">
+<span id="example-module"></span><h1>example module<a class="headerlink" href="#module-example" title="Permalink to this headline">¶</a></h1>
+<dl class="py function">
+<dt class="sig sig-object py" id="example.main">
+<span class="sig-prename descclassname"><span class="pre">example.</span></span><span class="sig-name descname"><span class="pre">main</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#example.main" title="Permalink to this definition">¶</a></dt>
+<dd></dd></dl>
+
+</div>
+
+
+	    </div>
+            <footer>
+  
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>
+        &copy; Copyright 2021, Bregoli Alessandro, Martini Filippo, Moretti Luca.
+    </p>
+  </div>
+
+  Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a <a href="https://github.com/jucacrispim/sphinx_pdj_theme">theme</a> provided by <a href="http://poraodojuca.net">Porão do Juca</a>.
+
+</footer>
+	</div>
+	</div>
+	  
+
+    <script type="text/javascript">
+        var DOCUMENTATION_OPTIONS = {
+            URL_ROOT:'./',
+            VERSION:'2.0',
+            COLLAPSE_INDEX:false,
+            FILE_SUFFIX:'.html',
+            HAS_SOURCE:  true
+        };
+    </script>
+    <script type="text/javascript" src="_static/documentation_options.js">
+
+    </script>
+    <script type="text/javascript" src="_static/jquery.js">
+
+    </script>
+    <script type="text/javascript" src="_static/underscore.js">
+
+    </script>
+    <script type="text/javascript" src="_static/doctools.js">
+
+    </script>
+
+  
+
+   <script type="text/javascript"
+           src="_static/js/theme.js"></script>
+
+   <script type="text/javascript"
+           src="_static/js/pdj.js"></script>
+
+  
+  
+  <script type="text/javascript">
+      jQuery(function () {
+          SphinxRtdTheme.StickyNav.enable();
+      });
+  </script>
+   
+
+  </body>
+</html>

docs/examples.html

@@ -19,6 +19,10 @@
     <link rel="stylesheet" href="_static/css/pdj.css" type="text/css" />
 
   
+    <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
+  
+    <link rel="stylesheet" href="_static/css/pdj.css" type="text/css" />
+  
 
   
 
@@ -268,6 +272,9 @@
             FILE_SUFFIX:'.html',
             HAS_SOURCE:  true
         };
+    </script>
+    <script type="text/javascript" src="_static/documentation_options.js">
+
     </script>
     <script type="text/javascript" src="_static/jquery.js">
 
@@ -278,9 +285,6 @@
     <script type="text/javascript" src="_static/doctools.js">
 
     </script>
-    <script type="text/javascript" src="_static/language_data.js">
-
-    </script>
 
   
 

docs/genindex.html

@@ -19,6 +19,10 @@
     <link rel="stylesheet" href="_static/css/pdj.css" type="text/css" />
 
   
+    <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
+  
+    <link rel="stylesheet" href="_static/css/pdj.css" type="text/css" />
+  
 
   
 
@@ -134,14 +138,17 @@
  | <a href="#S"><strong>S</strong></a>
  | <a href="#T"><strong>T</strong></a>
  | <a href="#V"><strong>V</strong></a>
+ | <a href="#W"><strong>W</strong></a>
  
 </div>
 <h2 id="A">A</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="PyCTBN.PyCTBN.utility.html#PyCTBN.PyCTBN.utility.abstract_exporter.AbstractExporter">AbstractExporter (class in PyCTBN.PyCTBN.utility.abstract_exporter)</a>
+</li>
       <li><a href="PyCTBN.PyCTBN.utility.html#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter">AbstractImporter (class in PyCTBN.PyCTBN.utility.abstract_importer)</a>
 </li>
-      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims.actual_cims">actual_cims() (PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims property)</a>
+      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims.actual_cims">actual_cims (PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims property)</a>
 </li>
       <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.structure.Structure.add_edge">add_edge() (PyCTBN.PyCTBN.structure_graph.structure.Structure method)</a>
 </li>
@@ -149,12 +156,14 @@
 </li>
       <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.add_nodes">add_nodes() (PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph method)</a>
 </li>
-      <li><a href="PyCTBN.PyCTBN.estimators.html#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.adjacency_matrix">adjacency_matrix() (PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator method)</a>
+      <li><a href="PyCTBN.PyCTBN.utility.html#PyCTBN.PyCTBN.utility.abstract_exporter.AbstractExporter.add_trajectory">add_trajectory() (PyCTBN.PyCTBN.utility.abstract_exporter.AbstractExporter method)</a>
 </li>
-      <li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.another_filtering_method">another_filtering_method() (PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims method)</a>
+      <li><a href="PyCTBN.PyCTBN.estimators.html#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.adjacency_matrix">adjacency_matrix() (PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator method)</a>
 </li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.another_filtering_method">another_filtering_method() (PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims method)</a>
+</li>
       <li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.aux_build_p_combs_structure">aux_build_p_combs_structure() (PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph method)</a>
 </li>
       <li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.aux_build_time_columns_filtering_structure_for_a_node">aux_build_time_columns_filtering_structure_for_a_node() (PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph method)</a>
@@ -223,9 +232,13 @@
   <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="PyCTBN.PyCTBN.utility.html#PyCTBN.PyCTBN.utility.cache.Cache">Cache (class in PyCTBN.PyCTBN.utility.cache)</a>
 </li>
-      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix.cim">cim() (PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix property)</a>
+      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix.cim">cim (PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix property)</a>
 </li>
       <li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.cim_equality_test">cim_equality_test() (PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior method)</a>
+</li>
+      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.network_generator.NetworkGenerator.cims">cims (PyCTBN.PyCTBN.structure_graph.network_generator.NetworkGenerator property)</a>
+</li>
+      <li><a href="PyCTBN.PyCTBN.utility.html#PyCTBN.PyCTBN.utility.json_exporter.JsonExporter.cims_to_json">cims_to_json() (PyCTBN.PyCTBN.utility.json_exporter.JsonExporter method)</a>
 </li>
       <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.structure.Structure.clean_structure_edges">clean_structure_edges() (PyCTBN.PyCTBN.structure_graph.structure.Structure method)</a>
 </li>
@@ -241,7 +254,7 @@
 </li>
       <li><a href="PyCTBN.PyCTBN.estimators.html#PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.complete_test">complete_test() (PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator method)</a>
 </li>
-      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory.complete_trajectory">complete_trajectory() (PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory property)</a>
+      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory.complete_trajectory">complete_trajectory (PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory property)</a>
 </li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
@@ -259,13 +272,15 @@
 </li>
       <li><a href="PyCTBN.PyCTBN.estimators.html#PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.compute_thumb_value">compute_thumb_value() (PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator method)</a>
 </li>
-      <li><a href="PyCTBN.PyCTBN.utility.html#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.concatenated_samples">concatenated_samples() (PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter property)</a>
+      <li><a href="PyCTBN.PyCTBN.utility.html#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.concatenated_samples">concatenated_samples (PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter property)</a>
 </li>
       <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix">ConditionalIntensityMatrix (class in PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix)</a>
 </li>
       <li><a href="PyCTBN.PyCTBN.optimizers.html#PyCTBN.PyCTBN.optimizers.constraint_based_optimizer.ConstraintBasedOptimizer">ConstraintBasedOptimizer (class in PyCTBN.PyCTBN.optimizers.constraint_based_optimizer)</a>
 </li>
       <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.structure.Structure.contains_edge">contains_edge() (PyCTBN.PyCTBN.structure_graph.structure.Structure method)</a>
+</li>
+      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.trajectory_generator.TrajectoryGenerator.CTBN_Sample">CTBN_Sample() (PyCTBN.PyCTBN.structure_graph.trajectory_generator.TrajectoryGenerator method)</a>
 </li>
       <li><a href="PyCTBN.PyCTBN.estimators.html#PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.ctpc_algorithm">ctpc_algorithm() (PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator method)</a>
 </li>
@@ -284,12 +299,16 @@
 </li>
       </ul></li>
   </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.network_generator.NetworkGenerator.dyn_str">dyn_str (PyCTBN.PyCTBN.structure_graph.network_generator.NetworkGenerator property)</a>
+</li>
+  </ul></td>
 </tr></table>
 
 <h2 id="E">E</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.edges">edges() (PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph property)</a>
+      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.edges">edges (PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph property)</a>
 
       <ul>
         <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.structure.Structure.edges">(PyCTBN.PyCTBN.structure_graph.structure.Structure property)</a>
@@ -297,16 +316,23 @@
       </ul></li>
       <li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.equality_of_cims_of_node">equality_of_cims_of_node() (PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior method)</a>
 </li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="PyCTBN.PyCTBN.estimators.html#PyCTBN.PyCTBN.estimators.structure_score_based_estimator.StructureScoreBasedEstimator.estimate_parents">estimate_parents() (PyCTBN.PyCTBN.estimators.structure_score_based_estimator.StructureScoreBasedEstimator method)</a>
 </li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="PyCTBN.PyCTBN.estimators.html#PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.estimate_structure">estimate_structure() (PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator method)</a>
 
       <ul>
         <li><a href="PyCTBN.PyCTBN.estimators.html#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.estimate_structure">(PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator method)</a>
 </li>
         <li><a href="PyCTBN.PyCTBN.estimators.html#PyCTBN.PyCTBN.estimators.structure_score_based_estimator.StructureScoreBasedEstimator.estimate_structure">(PyCTBN.PyCTBN.estimators.structure_score_based_estimator.StructureScoreBasedEstimator method)</a>
+</li>
+      </ul></li>
+      <li>
+    example
+
+      <ul>
+        <li><a href="example.html#module-example">module</a>
 </li>
       </ul></li>
   </ul></td>
@@ -325,7 +351,7 @@
       </ul></li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="PyCTBN.PyCTBN.utility.html#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.file_path">file_path() (PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter property)</a>
+      <li><a href="PyCTBN.PyCTBN.utility.html#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.file_path">file_path (PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter property)</a>
 </li>
       <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims.filter_cims_with_mask">filter_cims_with_mask() (PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims method)</a>
 </li>
@@ -337,6 +363,10 @@
 <h2 id="G">G</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.network_generator.NetworkGenerator.generate_cims">generate_cims() (PyCTBN.PyCTBN.structure_graph.network_generator.NetworkGenerator method)</a>
+</li>
+      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.network_generator.NetworkGenerator.generate_graph">generate_graph() (PyCTBN.PyCTBN.structure_graph.network_generator.NetworkGenerator method)</a>
+</li>
       <li><a href="PyCTBN.PyCTBN.estimators.html#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.generate_possible_sub_sets_of_size">generate_possible_sub_sets_of_size() (PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator static method)</a>
 </li>
       <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims.get_cims_number">get_cims_number() (PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims method)</a>
@@ -371,6 +401,8 @@
         <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.structure.Structure.get_states_number">(PyCTBN.PyCTBN.structure_graph.structure.Structure method)</a>
 </li>
       </ul></li>
+      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.network_generator.NetworkGenerator.graph">graph (PyCTBN.PyCTBN.structure_graph.network_generator.NetworkGenerator property)</a>
+</li>
   </ul></td>
 </tr></table>
 
@@ -381,7 +413,7 @@
 </li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath.has_prior_net_structure">has_prior_net_structure() (PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath property)</a>
+      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath.has_prior_net_structure">has_prior_net_structure (PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath property)</a>
 </li>
       <li><a href="PyCTBN.PyCTBN.optimizers.html#PyCTBN.PyCTBN.optimizers.hill_climbing_search.HillClimbing">HillClimbing (class in PyCTBN.PyCTBN.optimizers.hill_climbing_search)</a>
 </li>
@@ -414,6 +446,10 @@
 
 <h2 id="J">J</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="PyCTBN.PyCTBN.utility.html#PyCTBN.PyCTBN.utility.json_exporter.JsonExporter">JsonExporter (class in PyCTBN.PyCTBN.utility.json_exporter)</a>
+</li>
+  </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="PyCTBN.PyCTBN.utility.html#PyCTBN.PyCTBN.utility.json_importer.JsonImporter">JsonImporter (class in PyCTBN.PyCTBN.utility.json_importer)</a>
 </li>
@@ -423,6 +459,8 @@
 <h2 id="M">M</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="example.html#example.main">main() (in module example)</a>
+</li>
       <li><a href="PyCTBN.PyCTBN.estimators.html#PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.marginal_likelihood_q">marginal_likelihood_q() (PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator method)</a>
 </li>
       <li><a href="PyCTBN.PyCTBN.estimators.html#PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.marginal_likelihood_theta">marginal_likelihood_theta() (PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator method)</a>
@@ -431,6 +469,8 @@
     module
 
       <ul>
+        <li><a href="example.html#module-example">example</a>
+</li>
         <li><a href="PyCTBN.html#module-PyCTBN">PyCTBN</a>
 </li>
         <li><a href="PyCTBN.PyCTBN.html#module-PyCTBN.PyCTBN">PyCTBN.PyCTBN</a>
@@ -460,6 +500,8 @@
         <li><a href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph">PyCTBN.PyCTBN.structure_graph</a>
 </li>
         <li><a href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix">PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix</a>
+</li>
+        <li><a href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.network_generator">PyCTBN.PyCTBN.structure_graph.network_generator</a>
 </li>
         <li><a href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.network_graph">PyCTBN.PyCTBN.structure_graph.network_graph</a>
 </li>
@@ -470,12 +512,18 @@
         <li><a href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.structure">PyCTBN.PyCTBN.structure_graph.structure</a>
 </li>
         <li><a href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.trajectory">PyCTBN.PyCTBN.structure_graph.trajectory</a>
+</li>
+        <li><a href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.trajectory_generator">PyCTBN.PyCTBN.structure_graph.trajectory_generator</a>
 </li>
         <li><a href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility">PyCTBN.PyCTBN.utility</a>
+</li>
+        <li><a href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.abstract_exporter">PyCTBN.PyCTBN.utility.abstract_exporter</a>
 </li>
         <li><a href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.abstract_importer">PyCTBN.PyCTBN.utility.abstract_importer</a>
 </li>
         <li><a href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.cache">PyCTBN.PyCTBN.utility.cache</a>
+</li>
+        <li><a href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.json_exporter">PyCTBN.PyCTBN.utility.json_exporter</a>
 </li>
         <li><a href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.json_importer">PyCTBN.PyCTBN.utility.json_importer</a>
 </li>
@@ -486,18 +534,10 @@
         <li><a href="PyCTBN.tests.estimators.html#module-PyCTBN.tests.estimators">PyCTBN.tests.estimators</a>
 </li>
         <li><a href="PyCTBN.tests.estimators.html#module-PyCTBN.tests.estimators.test_parameters_estimator">PyCTBN.tests.estimators.test_parameters_estimator</a>
-</li>
-        <li><a href="PyCTBN.tests.estimators.html#module-PyCTBN.tests.estimators.test_structure_constraint_based_estimator">PyCTBN.tests.estimators.test_structure_constraint_based_estimator</a>
 </li>
         <li><a href="PyCTBN.tests.estimators.html#module-PyCTBN.tests.estimators.test_structure_estimator">PyCTBN.tests.estimators.test_structure_estimator</a>
-</li>
-        <li><a href="PyCTBN.tests.estimators.html#module-PyCTBN.tests.estimators.test_structure_score_based_estimator">PyCTBN.tests.estimators.test_structure_score_based_estimator</a>
 </li>
         <li><a href="PyCTBN.tests.optimizers.html#module-PyCTBN.tests.optimizers">PyCTBN.tests.optimizers</a>
-</li>
-        <li><a href="PyCTBN.tests.optimizers.html#module-PyCTBN.tests.optimizers.test_hill_climbing_search">PyCTBN.tests.optimizers.test_hill_climbing_search</a>
-</li>
-        <li><a href="PyCTBN.tests.optimizers.html#module-PyCTBN.tests.optimizers.test_tabu_search">PyCTBN.tests.optimizers.test_tabu_search</a>
 </li>
         <li><a href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph">PyCTBN.tests.structure_graph</a>
 </li>
@@ -523,16 +563,22 @@
 </li>
       </ul></li>
   </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.trajectory_generator.TrajectoryGenerator.multi_trajectory">multi_trajectory() (PyCTBN.PyCTBN.structure_graph.trajectory_generator.TrajectoryGenerator method)</a>
+</li>
+  </ul></td>
 </tr></table>
 
 <h2 id="N">N</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.network_generator.NetworkGenerator">NetworkGenerator (class in PyCTBN.PyCTBN.structure_graph.network_generator)</a>
+</li>
       <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph">NetworkGraph (class in PyCTBN.PyCTBN.structure_graph.network_graph)</a>
 </li>
-      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.nodes">nodes() (PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph property)</a>
+      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.nodes">nodes (PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph property)</a>
 </li>
-      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.nodes_indexes">nodes_indexes() (PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph property)</a>
+      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.nodes_indexes">nodes_indexes (PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph property)</a>
 
       <ul>
         <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.structure.Structure.nodes_indexes">(PyCTBN.PyCTBN.structure_graph.structure.Structure property)</a>
@@ -540,9 +586,9 @@
       </ul></li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.structure.Structure.nodes_labels">nodes_labels() (PyCTBN.PyCTBN.structure_graph.structure.Structure property)</a>
+      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.structure.Structure.nodes_labels">nodes_labels (PyCTBN.PyCTBN.structure_graph.structure.Structure property)</a>
 </li>
-      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.nodes_values">nodes_values() (PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph property)</a>
+      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.nodes_values">nodes_values (PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph property)</a>
 
       <ul>
         <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.structure.Structure.nodes_values">(PyCTBN.PyCTBN.structure_graph.structure.Structure property)</a>
@@ -578,6 +624,12 @@
 
       <ul>
         <li><a href="PyCTBN.tests.utility.html#PyCTBN.tests.utility.test_sample_importer.TestSampleImporter.ordered">(PyCTBN.tests.utility.test_sample_importer.TestSampleImporter method)</a>
+</li>
+      </ul></li>
+      <li><a href="PyCTBN.PyCTBN.utility.html#PyCTBN.PyCTBN.utility.abstract_exporter.AbstractExporter.out_file">out_file() (PyCTBN.PyCTBN.utility.abstract_exporter.AbstractExporter method)</a>
+
+      <ul>
+        <li><a href="PyCTBN.PyCTBN.utility.html#PyCTBN.PyCTBN.utility.json_exporter.JsonExporter.out_file">(PyCTBN.PyCTBN.utility.json_exporter.JsonExporter method)</a>
 </li>
       </ul></li>
   </ul></td>
@@ -586,7 +638,7 @@
 <h2 id="P">P</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.p_combs">p_combs() (PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph property)</a>
+      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.p_combs">p_combs (PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph property)</a>
 
       <ul>
         <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims.p_combs">(PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims property)</a>
@@ -699,6 +751,13 @@
 
       <ul>
         <li><a href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix">module</a>
+</li>
+      </ul></li>
+      <li>
+    PyCTBN.PyCTBN.structure_graph.network_generator
+
+      <ul>
+        <li><a href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.network_generator">module</a>
 </li>
       </ul></li>
       <li>
@@ -737,10 +796,26 @@
 </li>
       </ul></li>
       <li>
+    PyCTBN.PyCTBN.structure_graph.trajectory_generator
+
+      <ul>
+        <li><a href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.trajectory_generator">module</a>
+</li>
+      </ul></li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li>
     PyCTBN.PyCTBN.utility
 
       <ul>
         <li><a href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility">module</a>
+</li>
+      </ul></li>
+      <li>
+    PyCTBN.PyCTBN.utility.abstract_exporter
+
+      <ul>
+        <li><a href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.abstract_exporter">module</a>
 </li>
       </ul></li>
       <li>
@@ -750,13 +825,18 @@
         <li><a href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.abstract_importer">module</a>
 </li>
       </ul></li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
       <li>
     PyCTBN.PyCTBN.utility.cache
 
       <ul>
         <li><a href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.cache">module</a>
+</li>
+      </ul></li>
+      <li>
+    PyCTBN.PyCTBN.utility.json_exporter
+
+      <ul>
+        <li><a href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.json_exporter">module</a>
 </li>
       </ul></li>
       <li>
@@ -792,13 +872,6 @@
 
       <ul>
         <li><a href="PyCTBN.tests.estimators.html#module-PyCTBN.tests.estimators.test_parameters_estimator">module</a>
-</li>
-      </ul></li>
-      <li>
-    PyCTBN.tests.estimators.test_structure_constraint_based_estimator
-
-      <ul>
-        <li><a href="PyCTBN.tests.estimators.html#module-PyCTBN.tests.estimators.test_structure_constraint_based_estimator">module</a>
 </li>
       </ul></li>
       <li>
@@ -806,13 +879,6 @@
 
       <ul>
         <li><a href="PyCTBN.tests.estimators.html#module-PyCTBN.tests.estimators.test_structure_estimator">module</a>
-</li>
-      </ul></li>
-      <li>
-    PyCTBN.tests.estimators.test_structure_score_based_estimator
-
-      <ul>
-        <li><a href="PyCTBN.tests.estimators.html#module-PyCTBN.tests.estimators.test_structure_score_based_estimator">module</a>
 </li>
       </ul></li>
       <li>
@@ -820,20 +886,6 @@
 
       <ul>
         <li><a href="PyCTBN.tests.optimizers.html#module-PyCTBN.tests.optimizers">module</a>
-</li>
-      </ul></li>
-      <li>
-    PyCTBN.tests.optimizers.test_hill_climbing_search
-
-      <ul>
-        <li><a href="PyCTBN.tests.optimizers.html#module-PyCTBN.tests.optimizers.test_hill_climbing_search">module</a>
-</li>
-      </ul></li>
-      <li>
-    PyCTBN.tests.optimizers.test_tabu_search
-
-      <ul>
-        <li><a href="PyCTBN.tests.optimizers.html#module-PyCTBN.tests.optimizers.test_tabu_search">module</a>
 </li>
       </ul></li>
       <li>
@@ -952,15 +1004,7 @@
       <li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.setUpClass">setUpClass() (PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior class method)</a>
 
       <ul>
-        <li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_structure_constraint_based_estimator.TestStructureConstraintBasedEstimator.setUpClass">(PyCTBN.tests.estimators.test_structure_constraint_based_estimator.TestStructureConstraintBasedEstimator class method)</a>
-</li>
         <li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.setUpClass">(PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator class method)</a>
-</li>
-        <li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator.setUpClass">(PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator class method)</a>
-</li>
-        <li><a href="PyCTBN.tests.optimizers.html#PyCTBN.tests.optimizers.test_hill_climbing_search.TestHillClimbingSearch.setUpClass">(PyCTBN.tests.optimizers.test_hill_climbing_search.TestHillClimbingSearch class method)</a>
-</li>
-        <li><a href="PyCTBN.tests.optimizers.html#PyCTBN.tests.optimizers.test_tabu_search.TestTabuSearch.setUpClass">(PyCTBN.tests.optimizers.test_tabu_search.TestTabuSearch class method)</a>
 </li>
         <li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix.setUpClass">(PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix class method)</a>
 </li>
@@ -989,17 +1033,17 @@
 </li>
       <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory.size">size() (PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory method)</a>
 </li>
-      <li><a href="PyCTBN.PyCTBN.utility.html#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.sorter">sorter() (PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter property)</a>
+      <li><a href="PyCTBN.PyCTBN.utility.html#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.sorter">sorter (PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter property)</a>
 </li>
       <li><a href="PyCTBN.PyCTBN.estimators.html#PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator.spurious_edges">spurious_edges() (PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator method)</a>
 </li>
-      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix.state_residence_times">state_residence_times() (PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix property)</a>
+      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix.state_residence_times">state_residence_times (PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix property)</a>
 </li>
-      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix.state_transition_matrix">state_transition_matrix() (PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix property)</a>
+      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix.state_transition_matrix">state_transition_matrix (PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix property)</a>
 </li>
       <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.structure.Structure">Structure (class in PyCTBN.PyCTBN.structure_graph.structure)</a>
 </li>
-      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath.structure">structure() (PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath property)</a>
+      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath.structure">structure (PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath property)</a>
 
       <ul>
         <li><a href="PyCTBN.PyCTBN.utility.html#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.structure">(PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter property)</a>
@@ -1117,6 +1161,8 @@
 </li>
       <li><a href="PyCTBN.tests.utility.html#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_import_structure">test_import_structure() (PyCTBN.tests.utility.test_json_importer.TestJsonImporter method)</a>
 </li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="PyCTBN.tests.utility.html#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_import_variables">test_import_variables() (PyCTBN.tests.utility.test_json_importer.TestJsonImporter method)</a>
 </li>
       <li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_init">test_init() (PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator method)</a>
@@ -1141,8 +1187,6 @@
         <li><a href="PyCTBN.tests.utility.html#PyCTBN.tests.utility.test_sample_importer.TestSampleImporter.test_init">(PyCTBN.tests.utility.test_sample_importer.TestSampleImporter method)</a>
 </li>
       </ul></li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_init_not_filled_dataframse">test_init_not_filled_dataframse() (PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath method)</a>
 </li>
       <li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_init_not_initialized_importer">test_init_not_initialized_importer() (PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath method)</a>
@@ -1170,44 +1214,12 @@
       <li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_save_plot_estimated_graph">test_save_plot_estimated_graph() (PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator method)</a>
 </li>
       <li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_save_results">test_save_results() (PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator method)</a>
-</li>
-      <li><a href="PyCTBN.tests.optimizers.html#PyCTBN.tests.optimizers.test_hill_climbing_search.TestHillClimbingSearch.test_structure">test_structure() (PyCTBN.tests.optimizers.test_hill_climbing_search.TestHillClimbingSearch method)</a>
-
-      <ul>
-        <li><a href="PyCTBN.tests.optimizers.html#PyCTBN.tests.optimizers.test_tabu_search.TestTabuSearch.test_structure">(PyCTBN.tests.optimizers.test_tabu_search.TestTabuSearch method)</a>
-</li>
-      </ul></li>
-      <li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_structure_constraint_based_estimator.TestStructureConstraintBasedEstimator.test_structure_1">test_structure_1() (PyCTBN.tests.estimators.test_structure_constraint_based_estimator.TestStructureConstraintBasedEstimator method)</a>
-
-      <ul>
-        <li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator.test_structure_1">(PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator method)</a>
-</li>
-      </ul></li>
-      <li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_structure_constraint_based_estimator.TestStructureConstraintBasedEstimator.test_structure_2">test_structure_2() (PyCTBN.tests.estimators.test_structure_constraint_based_estimator.TestStructureConstraintBasedEstimator method)</a>
-
-      <ul>
-        <li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator.test_structure_2">(PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator method)</a>
-</li>
-      </ul></li>
-      <li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_structure_constraint_based_estimator.TestStructureConstraintBasedEstimator.test_structure_3">test_structure_3() (PyCTBN.tests.estimators.test_structure_constraint_based_estimator.TestStructureConstraintBasedEstimator method)</a>
-
-      <ul>
-        <li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator.test_structure_3">(PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator method)</a>
-</li>
-        <li><a href="PyCTBN.tests.optimizers.html#PyCTBN.tests.optimizers.test_hill_climbing_search.TestHillClimbingSearch.test_structure_3">(PyCTBN.tests.optimizers.test_hill_climbing_search.TestHillClimbingSearch method)</a>
-</li>
-        <li><a href="PyCTBN.tests.optimizers.html#PyCTBN.tests.optimizers.test_tabu_search.TestTabuSearch.test_structure_3">(PyCTBN.tests.optimizers.test_tabu_search.TestTabuSearch method)</a>
-</li>
-      </ul></li>
-      <li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator.test_structure_monoprocesso">test_structure_monoprocesso() (PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator method)</a>
 </li>
       <li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_time">test_time() (PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator method)</a>
 </li>
       <li><a href="PyCTBN.tests.utility.html#PyCTBN.tests.utility.test_cache.TestCache">TestCache (class in PyCTBN.tests.utility.test_cache)</a>
 </li>
       <li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix">TestConditionalIntensityMatrix (class in PyCTBN.tests.structure_graph.test_cim)</a>
-</li>
-      <li><a href="PyCTBN.tests.optimizers.html#PyCTBN.tests.optimizers.test_hill_climbing_search.TestHillClimbingSearch">TestHillClimbingSearch (class in PyCTBN.tests.optimizers.test_hill_climbing_search)</a>
 </li>
       <li><a href="PyCTBN.tests.utility.html#PyCTBN.tests.utility.test_json_importer.TestJsonImporter">TestJsonImporter (class in PyCTBN.tests.utility.test_json_importer)</a>
 </li>
@@ -1222,36 +1234,32 @@
       <li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims">TestSetOfCims (class in PyCTBN.tests.structure_graph.test_setofcims)</a>
 </li>
       <li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_structure.TestStructure">TestStructure (class in PyCTBN.tests.structure_graph.test_structure)</a>
-</li>
-      <li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_structure_constraint_based_estimator.TestStructureConstraintBasedEstimator">TestStructureConstraintBasedEstimator (class in PyCTBN.tests.estimators.test_structure_constraint_based_estimator)</a>
 </li>
       <li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator">TestStructureEstimator (class in PyCTBN.tests.estimators.test_structure_estimator)</a>
-</li>
-      <li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator">TestStructureScoreBasedEstimator (class in PyCTBN.tests.estimators.test_structure_score_based_estimator)</a>
-</li>
-      <li><a href="PyCTBN.tests.optimizers.html#PyCTBN.tests.optimizers.test_tabu_search.TestTabuSearch">TestTabuSearch (class in PyCTBN.tests.optimizers.test_tabu_search)</a>
 </li>
       <li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_trajectory.TestTrajectory">TestTrajectory (class in PyCTBN.tests.structure_graph.test_trajectory)</a>
 </li>
-      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.time_filtering">time_filtering() (PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph property)</a>
+      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.time_filtering">time_filtering (PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph property)</a>
 </li>
-      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.time_scalar_indexing_strucure">time_scalar_indexing_strucure() (PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph property)</a>
+      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.time_scalar_indexing_strucure">time_scalar_indexing_strucure (PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph property)</a>
 </li>
-      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory.times">times() (PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory property)</a>
+      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory.times">times (PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory property)</a>
 </li>
-      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath.total_variables_count">total_variables_count() (PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath property)</a>
+      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath.total_variables_count">total_variables_count (PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath property)</a>
 </li>
-      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.structure.Structure.total_variables_number">total_variables_number() (PyCTBN.PyCTBN.structure_graph.structure.Structure property)</a>
+      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.structure.Structure.total_variables_number">total_variables_number (PyCTBN.PyCTBN.structure_graph.structure.Structure property)</a>
 </li>
-      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath.trajectories">trajectories() (PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath property)</a>
+      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath.trajectories">trajectories (PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath property)</a>
 </li>
       <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory">Trajectory (class in PyCTBN.PyCTBN.structure_graph.trajectory)</a>
 </li>
-      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory.trajectory">trajectory() (PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory property)</a>
+      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory.trajectory">trajectory (PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory property)</a>
+</li>
+      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.trajectory_generator.TrajectoryGenerator">TrajectoryGenerator (class in PyCTBN.PyCTBN.structure_graph.trajectory_generator)</a>
 </li>
-      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.transition_filtering">transition_filtering() (PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph property)</a>
+      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.transition_filtering">transition_filtering (PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph property)</a>
 </li>
-      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.transition_scalar_indexing_structure">transition_scalar_indexing_structure() (PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph property)</a>
+      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph.transition_scalar_indexing_structure">transition_scalar_indexing_structure (PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph property)</a>
 </li>
   </ul></td>
 </tr></table>
@@ -1260,12 +1268,24 @@
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="PyCTBN.PyCTBN.estimators.html#PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.variable_cim_xu_marginal_likelihood_q">variable_cim_xu_marginal_likelihood_q() (PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator method)</a>
+</li>
+      <li><a href="PyCTBN.PyCTBN.estimators.html#PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.variable_cim_xu_marginal_likelihood_theta">variable_cim_xu_marginal_likelihood_theta() (PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator method)</a>
 </li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="PyCTBN.PyCTBN.estimators.html#PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator.variable_cim_xu_marginal_likelihood_theta">variable_cim_xu_marginal_likelihood_theta() (PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator method)</a>
+      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.network_generator.NetworkGenerator.variables">variables (PyCTBN.PyCTBN.structure_graph.network_generator.NetworkGenerator property)</a>
+
+      <ul>
+        <li><a href="PyCTBN.PyCTBN.utility.html#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.variables">(PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter property)</a>
 </li>
-      <li><a href="PyCTBN.PyCTBN.utility.html#PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter.variables">variables() (PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter property)</a>
+      </ul></li>
+  </ul></td>
+</tr></table>
+
+<h2 id="W">W</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="PyCTBN.PyCTBN.structure_graph.html#PyCTBN.PyCTBN.structure_graph.trajectory_generator.TrajectoryGenerator.worker">worker() (PyCTBN.PyCTBN.structure_graph.trajectory_generator.TrajectoryGenerator method)</a>
 </li>
   </ul></td>
 </tr></table>
@@ -1299,6 +1319,9 @@
             FILE_SUFFIX:'.html',
             HAS_SOURCE:  true
         };
+    </script>
+    <script type="text/javascript" src="_static/documentation_options.js">
+
     </script>
     <script type="text/javascript" src="_static/jquery.js">
 
@@ -1309,9 +1332,6 @@
     <script type="text/javascript" src="_static/doctools.js">
 
     </script>
-    <script type="text/javascript" src="_static/language_data.js">
-
-    </script>
 
   
 

docs/index.html

@@ -19,6 +19,10 @@
     <link rel="stylesheet" href="_static/css/pdj.css" type="text/css" />
 
   
+    <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
+  
+    <link rel="stylesheet" href="_static/css/pdj.css" type="text/css" />
+  
 
   
 
@@ -142,18 +146,22 @@
 <li class="toctree-l3"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html">PyCTBN.PyCTBN.structure_graph package</a><ul>
 <li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#submodules">Submodules</a></li>
 <li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix">PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix module</a></li>
+<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.network_generator">PyCTBN.PyCTBN.structure_graph.network_generator module</a></li>
 <li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.network_graph">PyCTBN.PyCTBN.structure_graph.network_graph module</a></li>
 <li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.sample_path">PyCTBN.PyCTBN.structure_graph.sample_path module</a></li>
 <li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.set_of_cims">PyCTBN.PyCTBN.structure_graph.set_of_cims module</a></li>
 <li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.structure">PyCTBN.PyCTBN.structure_graph.structure module</a></li>
 <li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.trajectory">PyCTBN.PyCTBN.structure_graph.trajectory module</a></li>
+<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph.trajectory_generator">PyCTBN.PyCTBN.structure_graph.trajectory_generator module</a></li>
 <li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.structure_graph.html#module-PyCTBN.PyCTBN.structure_graph">Module contents</a></li>
 </ul>
 </li>
 <li class="toctree-l3"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html">PyCTBN.PyCTBN.utility package</a><ul>
 <li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#submodules">Submodules</a></li>
+<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.abstract_exporter">PyCTBN.PyCTBN.utility.abstract_exporter module</a></li>
 <li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.abstract_importer">PyCTBN.PyCTBN.utility.abstract_importer module</a></li>
 <li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.cache">PyCTBN.PyCTBN.utility.cache module</a></li>
+<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.json_exporter">PyCTBN.PyCTBN.utility.json_exporter module</a></li>
 <li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.json_importer">PyCTBN.PyCTBN.utility.json_importer module</a></li>
 <li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.sample_importer">PyCTBN.PyCTBN.utility.sample_importer module</a></li>
 <li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility">Module contents</a></li>
@@ -218,6 +226,9 @@
             FILE_SUFFIX:'.html',
             HAS_SOURCE:  true
         };
+    </script>
+    <script type="text/javascript" src="_static/documentation_options.js">
+
     </script>
     <script type="text/javascript" src="_static/jquery.js">
 
@@ -228,9 +239,6 @@
     <script type="text/javascript" src="_static/doctools.js">
 
     </script>
-    <script type="text/javascript" src="_static/language_data.js">
-
-    </script>
 
   
 

docs/modules.html

@@ -19,6 +19,10 @@
     <link rel="stylesheet" href="_static/css/pdj.css" type="text/css" />
 
   
+    <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
+  
+    <link rel="stylesheet" href="_static/css/pdj.css" type="text/css" />
+  
 
   
 
@@ -116,59 +120,28 @@
 <h1>PyCTBN<a class="headerlink" href="#pyctbn" title="Permalink to this headline">¶</a></h1>
 <div class="toctree-wrapper compound">
 <ul>
-<li class="toctree-l1"><a class="reference internal" href="PyCTBN.PyCTBN.html">PyCTBN.PyCTBN package</a><ul>
+<li class="toctree-l1"><a class="reference internal" href="PyCTBN.html">PyCTBN package</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.html#subpackages">Subpackages</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="PyCTBN.html#subpackages">Subpackages</a><ul>
-<li class="toctree-l3"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html">PyCTBN.PyCTBN.estimators package</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="PyCTBN.PyCTBN.html">PyCTBN.PyCTBN package</a><ul>
-<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html#submodules">Submodules</a></li>
+<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.html#subpackages">Subpackages</a></li>
-<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html#module-PyCTBN.PyCTBN.estimators.fam_score_calculator">PyCTBN.PyCTBN.estimators.fam_score_calculator module</a></li>
+<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.html#module-PyCTBN.PyCTBN">Module contents</a></li>
-<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html#module-PyCTBN.PyCTBN.estimators.parameters_estimator">PyCTBN.PyCTBN.estimators.parameters_estimator module</a></li>
-<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html#module-PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator">PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator module</a></li>
-<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html#module-PyCTBN.PyCTBN.estimators.structure_estimator">PyCTBN.PyCTBN.estimators.structure_estimator module</a></li>
-<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html#module-PyCTBN.PyCTBN.estimators.structure_score_based_estimator">PyCTBN.PyCTBN.estimators.structure_score_based_estimator module</a></li>
-<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.estimators.html#module-PyCTBN.PyCTBN.estimators">Module contents</a></li>
-</ul>
-</li>
-<li class="toctree-l3"><a class="reference internal" href="PyCTBN.PyCTBN.optimizers.html">PyCTBN.PyCTBN.optimizers package</a><ul>
-<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.optimizers.html#submodules">Submodules</a></li>
-<li class="toctree-l4"><a class="reference internal" href="PyCTBN.PyCTBN.optimizers.html#module-PyCTBN.PyCTBN.optimizers.constraint_based_optimizer">PyCTBN.PyCTBN.optimizers.constraint_based_optimizer module</a></li>
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 </ul>
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+       <a href="PyCTBN.PyCTBN.utility.html#module-PyCTBN.PyCTBN.utility.sample_importer"><code class="xref">PyCTBN.PyCTBN.utility.sample_importer</code></a></td><td>
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+    <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
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