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Fix cpu_count for timeit

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parallel_struct_est
Filippo Martini 4 years ago
parent a3ea0534ae
commit 5fd178d35c
1 changed files with 5 additions and 5 deletions
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      PyCTBN/PyCTBN/structure_estimator.py

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PyCTBN/PyCTBN/structure_estimator.py
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@ -247,7 +247,7 @@ class StructureEstimator:
list_without_test_parent.remove(parent_label) list_without_test_parent.remove(parent_label)
return map(list, itertools.combinations(list_without_test_parent, size)) return map(list, itertools.combinations(list_without_test_parent, size))
def ctpc_algorithm(self, multi_processing: bool) -> None: def ctpc_algorithm(self) -> None:
"""Compute the CTPC algorithm over the entire net. """Compute the CTPC algorithm over the entire net.
""" """
ctpc_algo = StructureEstimator.one_iteration_of_CTPC_algorithm ctpc_algo = StructureEstimator.one_iteration_of_CTPC_algorithm
@ -269,10 +269,10 @@ class StructureEstimator:
nodes_vals_array_list = [self._nodes_vals] * len(self._nodes) nodes_vals_array_list = [self._nodes_vals] * len(self._nodes)
tests_alfa_dims_list = [(self._exp_test_sign, self._chi_test_alfa)] * len(self._nodes) tests_alfa_dims_list = [(self._exp_test_sign, self._chi_test_alfa)] * len(self._nodes)
datas_dims_list = [[self._times.shape, self._trajectories.shape]] * len(self._nodes) datas_dims_list = [[self._times.shape, self._trajectories.shape]] * len(self._nodes)
if multi_processing: #if multi_processing:
cpu_count = multiprocessing.cpu_count() cpu_count = multiprocessing.cpu_count()
else: #else:
cpu_count = 1 #cpu_count = 1
print("CPU COUNT", cpu_count) print("CPU COUNT", cpu_count)
with multiprocessing.Pool(processes=cpu_count) as pool: with multiprocessing.Pool(processes=cpu_count) as pool:
parent_sets = pool.starmap(ctpc_algo, zip(self._nodes, self._nodes_vals, parents_list, parent_sets = pool.starmap(ctpc_algo, zip(self._nodes, self._nodes_vals, parents_list,