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PyCTBN
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Removed tests server

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Luca Moretti 4 years ago
parent 81586db362
commit 51303bd8a1
2 changed files with 0 additions and 137 deletions
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  1. 58
      PyCTBN/tests/estimators/test_structure_constraint_based_estimator_server.py
  2. 79
      PyCTBN/tests/estimators/test_structure_score_based_estimator_server.py

58
PyCTBN/tests/estimators/test_structure_constraint_based_estimator_server.py
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@ -1,58 +0,0 @@
import glob
import math
import os
import unittest
import networkx as nx
import numpy as np
import psutil
from ...PyCTBN.utility.cache import Cache
from ...PyCTBN.structure_graph.sample_path import SamplePath
from ...PyCTBN.estimators.structure_constraint_based_estimator import StructureConstraintBasedEstimator
from ...PyCTBN.utility.json_importer import JsonImporter
from multiprocessing import set_start_method
import copy
class TestStructureConstraintBasedEstimator(unittest.TestCase):
@classmethod
def setUpClass(cls):
pass
def test_structure(self):
#cls.read_files = glob.glob(os.path.join('../../data', "*.json"))
self.importer = JsonImporter("./PyCTBN/test_data/networks_and_trajectories_binary_data_01_3.json", 'samples', 'dyn.str', 'variables', 'Time', 'Name')
self.s1 = SamplePath(self.importer)
self.s1.build_trajectories()
self.s1.build_structure()
true_edges = copy.deepcopy(self.s1.structure.edges)
true_edges = set(map(tuple, true_edges))
se1 = StructureConstraintBasedEstimator(self.s1,0.1,0.1)
edges = se1.estimate_structure(disable_multiprocessing=False)
self.importer = JsonImporter("./PyCTBN/test_data/networks_and_trajectories_binary_data_01_3.json", 'samples', 'dyn.str', 'variables', 'Time', 'Name')
self.s1 = SamplePath(self.importer)
self.s1.build_trajectories()
self.s1.build_structure()
true_edges = copy.deepcopy(self.s1.structure.edges)
true_edges = set(map(tuple, true_edges))
se1 = StructureConstraintBasedEstimator(self.s1,0.1,0.1)
edges = se1.estimate_structure(disable_multiprocessing=True)
self.assertEqual(edges, true_edges)
if __name__ == '__main__':
unittest.main()

79
PyCTBN/tests/estimators/test_structure_score_based_estimator_server.py
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@ -1,79 +0,0 @@
import glob
import math
import os
import unittest
import networkx as nx
import numpy as np
import psutil
import copy
from ...PyCTBN.utility.cache import Cache
from ...PyCTBN.structure_graph.sample_path import SamplePath
from ...PyCTBN.estimators.structure_score_based_estimator import StructureScoreBasedEstimator
from ...PyCTBN.utility.json_importer import JsonImporter
class TestStructureScoreBasedEstimator(unittest.TestCase):
@classmethod
def setUpClass(cls):
pass
def test_structure(self):
#cls.read_files = glob.glob(os.path.join('../../data', "*.json"))
self.importer = JsonImporter("./PyCTBN/test_data/networks_and_trajectories_binary_data_01_3.json", 'samples', 'dyn.str', 'variables', 'Time', 'Name')
self.s1 = SamplePath(self.importer)
self.s1.build_trajectories()
self.s1.build_structure()
true_edges = copy.deepcopy(self.s1.structure.edges)
true_edges = set(map(tuple, true_edges))
se1 = StructureScoreBasedEstimator(self.s1)
edges = se1.estimate_structure(
max_parents = None,
iterations_number = 100,
patience = 35,
tabu_length = 15,
tabu_rules_duration = 15,
optimizer = 'tabu',
disable_multiprocessing=False
)
self.importer = JsonImporter("./PyCTBN/test_data/networks_and_trajectories_binary_data_01_3.json", 'samples', 'dyn.str', 'variables', 'Time', 'Name')
self.s1 = SamplePath(self.importer)
self.s1.build_trajectories()
self.s1.build_structure()
true_edges = copy.deepcopy(self.s1.structure.edges)
true_edges = set(map(tuple, true_edges))
se1 = StructureScoreBasedEstimator(self.s1)
edges = se1.estimate_structure(
max_parents = None,
iterations_number = 100,
patience = 35,
tabu_length = 15,
tabu_rules_duration = 15,
optimizer = 'tabu',
disable_multiprocessing=True
)
self.assertEqual(edges, true_edges)
if __name__ == '__main__':
unittest.main()