Old engine for Continuous Time Bayesian Networks. Superseded by reCTBN. 🐍
https://github.com/madlabunimib/PyCTBN
You can not select more than 25 topics
Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
40 lines
1.3 KiB
40 lines
1.3 KiB
import unittest
|
|
from line_profiler import LineProfiler
|
|
|
|
import sample_path as sp
|
|
import structure_estimator as se
|
|
|
|
class TestStructureEstimator(unittest.TestCase):
|
|
|
|
@classmethod
|
|
def setUpClass(cls) -> None:
|
|
cls.s1 = sp.SamplePath('../data', 'samples', 'dyn.str', 'variables', 'Time', 'Name')
|
|
cls.s1.build_trajectories()
|
|
cls.s1.build_structure()
|
|
|
|
def test_init(self):
|
|
se1 = se.StructureEstimator(self.s1)
|
|
self.assertEqual(self.s1, se1.sample_path)
|
|
self.assertEqual(se1.complete_graph_frame.shape[0],
|
|
self.s1.total_variables_count *(self.s1.total_variables_count - 1))
|
|
|
|
def test_one_iteration(self):
|
|
se1 = se.StructureEstimator(self.s1, 0.1, 0.1)
|
|
#se1.one_iteration_of_CTPC_algorithm('X')
|
|
#self.aux_test_complete_test(se1, 'X', 'Y', ['Z'])
|
|
lp = LineProfiler()
|
|
lp.add_function(se1.complete_test)
|
|
lp.add_function(se1.one_iteration_of_CTPC_algorithm)
|
|
lp.add_function(se1.independence_test)
|
|
lp_wrapper = lp(se1.ctpc_algorithm)
|
|
lp_wrapper()
|
|
lp.print_stats()
|
|
#se1.ctpc_algorithm()
|
|
#print(se1.complete_graph.edges)
|
|
|
|
def aux_test_complete_test(self, estimator, test_par, test_child, p_set):
|
|
estimator.complete_test(test_par, test_child, p_set)
|
|
|
|
|
|
if __name__ == '__main__':
|
|
unittest.main()
|
|
|