Old engine for Continuous Time Bayesian Networks. Superseded by reCTBN. 🐍
https://github.com/madlabunimib/PyCTBN
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113 lines
4.3 KiB
113 lines
4.3 KiB
import os
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from os.path import join
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from scipy._build_utils import numpy_nodepr_api
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def configuration(parent_package='',top_path=None):
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from numpy.distutils.misc_util import Configuration
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from scipy._build_utils.system_info import get_info
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from scipy._build_utils import (uses_blas64, blas_ilp64_pre_build_hook,
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combine_dict, get_f2py_int64_options)
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config = Configuration('integrate', parent_package, top_path)
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if uses_blas64():
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lapack_opt = get_info('lapack_ilp64_opt', 2)
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pre_build_hook = blas_ilp64_pre_build_hook(lapack_opt)
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f2py_options = get_f2py_int64_options()
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else:
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lapack_opt = get_info('lapack_opt')
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pre_build_hook = None
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f2py_options = None
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mach_src = [join('mach','*.f')]
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quadpack_src = [join('quadpack', '*.f')]
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lsoda_src = [join('odepack', fn) for fn in [
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'blkdta000.f', 'bnorm.f', 'cfode.f',
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'ewset.f', 'fnorm.f', 'intdy.f',
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'lsoda.f', 'prja.f', 'solsy.f', 'srcma.f',
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'stoda.f', 'vmnorm.f', 'xerrwv.f', 'xsetf.f',
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'xsetun.f']]
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vode_src = [join('odepack', 'vode.f'), join('odepack', 'zvode.f')]
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dop_src = [join('dop','*.f')]
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quadpack_test_src = [join('tests','_test_multivariate.c')]
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odeint_banded_test_src = [join('tests', 'banded5x5.f')]
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config.add_library('mach', sources=mach_src, config_fc={'noopt': (__file__, 1)},
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_pre_build_hook=pre_build_hook)
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config.add_library('quadpack', sources=quadpack_src, _pre_build_hook=pre_build_hook)
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config.add_library('lsoda', sources=lsoda_src, _pre_build_hook=pre_build_hook)
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config.add_library('vode', sources=vode_src, _pre_build_hook=pre_build_hook)
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config.add_library('dop', sources=dop_src, _pre_build_hook=pre_build_hook)
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# Extensions
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# quadpack:
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include_dirs = [join(os.path.dirname(__file__), '..', '_lib', 'src')]
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cfg = combine_dict(lapack_opt,
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include_dirs=include_dirs,
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libraries=['quadpack', 'mach'])
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config.add_extension('_quadpack',
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sources=['_quadpackmodule.c'],
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depends=(['__quadpack.h']
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+ quadpack_src + mach_src),
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**cfg)
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# odepack/lsoda-odeint
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cfg = combine_dict(lapack_opt, numpy_nodepr_api,
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libraries=['lsoda', 'mach'])
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config.add_extension('_odepack',
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sources=['_odepackmodule.c'],
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depends=(lsoda_src + mach_src),
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**cfg)
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# vode
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cfg = combine_dict(lapack_opt,
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libraries=['vode'])
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ext = config.add_extension('vode',
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sources=['vode.pyf'],
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depends=vode_src,
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f2py_options=f2py_options,
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**cfg)
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ext._pre_build_hook = pre_build_hook
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# lsoda
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cfg = combine_dict(lapack_opt,
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libraries=['lsoda', 'mach'])
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ext = config.add_extension('lsoda',
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sources=['lsoda.pyf'],
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depends=(lsoda_src + mach_src),
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f2py_options=f2py_options,
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**cfg)
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ext._pre_build_hook = pre_build_hook
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# dop
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ext = config.add_extension('_dop',
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sources=['dop.pyf'],
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libraries=['dop'],
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depends=dop_src,
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f2py_options=f2py_options)
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ext._pre_build_hook = pre_build_hook
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config.add_extension('_test_multivariate',
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sources=quadpack_test_src)
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# Fortran+f2py extension module for testing odeint.
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cfg = combine_dict(lapack_opt,
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libraries=['lsoda', 'mach'])
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ext = config.add_extension('_test_odeint_banded',
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sources=odeint_banded_test_src,
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depends=(lsoda_src + mach_src),
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f2py_options=f2py_options,
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**cfg)
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ext._pre_build_hook = pre_build_hook
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config.add_subpackage('_ivp')
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config.add_data_dir('tests')
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return config
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if __name__ == '__main__':
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from numpy.distutils.core import setup
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setup(**configuration(top_path='').todict())
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