Old engine for Continuous Time Bayesian Networks. Superseded by reCTBN. 🐍
https://github.com/madlabunimib/PyCTBN
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372 lines
13 KiB
372 lines
13 KiB
"""
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Module for formatting output data in Latex.
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"""
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from typing import IO, List, Optional, Tuple
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import numpy as np
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from pandas.core.dtypes.generic import ABCMultiIndex
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from pandas.io.formats.format import DataFrameFormatter, TableFormatter
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class LatexFormatter(TableFormatter):
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"""
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Used to render a DataFrame to a LaTeX tabular/longtable environment output.
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Parameters
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----------
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formatter : `DataFrameFormatter`
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column_format : str, default None
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The columns format as specified in `LaTeX table format
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<https://en.wikibooks.org/wiki/LaTeX/Tables>`__ e.g 'rcl' for 3 columns
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longtable : boolean, default False
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Use a longtable environment instead of tabular.
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See Also
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--------
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HTMLFormatter
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"""
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def __init__(
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self,
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formatter: DataFrameFormatter,
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column_format: Optional[str] = None,
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longtable: bool = False,
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multicolumn: bool = False,
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multicolumn_format: Optional[str] = None,
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multirow: bool = False,
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caption: Optional[str] = None,
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label: Optional[str] = None,
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):
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self.fmt = formatter
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self.frame = self.fmt.frame
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self.bold_rows = self.fmt.bold_rows
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self.column_format = column_format
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self.longtable = longtable
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self.multicolumn = multicolumn
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self.multicolumn_format = multicolumn_format
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self.multirow = multirow
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self.caption = caption
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self.label = label
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self.escape = self.fmt.escape
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def write_result(self, buf: IO[str]) -> None:
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"""
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Render a DataFrame to a LaTeX tabular, longtable, or table/tabular
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environment output.
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"""
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# string representation of the columns
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if len(self.frame.columns) == 0 or len(self.frame.index) == 0:
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info_line = (
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f"Empty {type(self.frame).__name__}\n"
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f"Columns: {self.frame.columns}\n"
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f"Index: {self.frame.index}"
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)
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strcols = [[info_line]]
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else:
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strcols = self.fmt._to_str_columns()
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def get_col_type(dtype):
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if issubclass(dtype.type, np.number):
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return "r"
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else:
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return "l"
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# reestablish the MultiIndex that has been joined by _to_str_column
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if self.fmt.index and isinstance(self.frame.index, ABCMultiIndex):
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out = self.frame.index.format(
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adjoin=False,
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sparsify=self.fmt.sparsify,
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names=self.fmt.has_index_names,
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na_rep=self.fmt.na_rep,
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)
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# index.format will sparsify repeated entries with empty strings
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# so pad these with some empty space
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def pad_empties(x):
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for pad in reversed(x):
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if pad:
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break
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return [x[0]] + [i if i else " " * len(pad) for i in x[1:]]
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out = (pad_empties(i) for i in out)
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# Add empty spaces for each column level
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clevels = self.frame.columns.nlevels
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out = [[" " * len(i[-1])] * clevels + i for i in out]
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# Add the column names to the last index column
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cnames = self.frame.columns.names
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if any(cnames):
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new_names = [i if i else "{}" for i in cnames]
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out[self.frame.index.nlevels - 1][:clevels] = new_names
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# Get rid of old multiindex column and add new ones
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strcols = out + strcols[1:]
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if self.column_format is None:
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dtypes = self.frame.dtypes._values
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column_format = "".join(map(get_col_type, dtypes))
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if self.fmt.index:
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index_format = "l" * self.frame.index.nlevels
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column_format = index_format + column_format
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elif not isinstance(self.column_format, str): # pragma: no cover
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raise AssertionError(
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f"column_format must be str or unicode, not {type(column_format)}"
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)
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else:
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column_format = self.column_format
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if self.longtable:
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self._write_longtable_begin(buf, column_format)
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else:
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self._write_tabular_begin(buf, column_format)
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buf.write("\\toprule\n")
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ilevels = self.frame.index.nlevels
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clevels = self.frame.columns.nlevels
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nlevels = clevels
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if self.fmt.has_index_names and self.fmt.show_index_names:
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nlevels += 1
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strrows = list(zip(*strcols))
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self.clinebuf: List[List[int]] = []
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for i, row in enumerate(strrows):
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if i == nlevels and self.fmt.header:
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buf.write("\\midrule\n") # End of header
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if self.longtable:
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buf.write("\\endhead\n")
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buf.write("\\midrule\n")
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buf.write(
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f"\\multicolumn{{{len(row)}}}{{r}}"
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"{{Continued on next page}} \\\\\n"
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)
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buf.write("\\midrule\n")
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buf.write("\\endfoot\n\n")
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buf.write("\\bottomrule\n")
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buf.write("\\endlastfoot\n")
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if self.escape:
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# escape backslashes first
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crow = [
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(
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x.replace("\\", "\\textbackslash ")
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.replace("_", "\\_")
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.replace("%", "\\%")
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.replace("$", "\\$")
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.replace("#", "\\#")
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.replace("{", "\\{")
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.replace("}", "\\}")
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.replace("~", "\\textasciitilde ")
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.replace("^", "\\textasciicircum ")
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.replace("&", "\\&")
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if (x and x != "{}")
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else "{}"
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)
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for x in row
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]
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else:
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crow = [x if x else "{}" for x in row]
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if self.bold_rows and self.fmt.index:
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# bold row labels
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crow = [
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f"\\textbf{{{x}}}"
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if j < ilevels and x.strip() not in ["", "{}"]
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else x
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for j, x in enumerate(crow)
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]
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if i < clevels and self.fmt.header and self.multicolumn:
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# sum up columns to multicolumns
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crow = self._format_multicolumn(crow, ilevels)
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if i >= nlevels and self.fmt.index and self.multirow and ilevels > 1:
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# sum up rows to multirows
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crow = self._format_multirow(crow, ilevels, i, strrows)
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buf.write(" & ".join(crow))
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buf.write(" \\\\\n")
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if self.multirow and i < len(strrows) - 1:
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self._print_cline(buf, i, len(strcols))
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if self.longtable:
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self._write_longtable_end(buf)
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else:
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self._write_tabular_end(buf)
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def _format_multicolumn(self, row: List[str], ilevels: int) -> List[str]:
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r"""
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Combine columns belonging to a group to a single multicolumn entry
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according to self.multicolumn_format
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e.g.:
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a & & & b & c &
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will become
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\multicolumn{3}{l}{a} & b & \multicolumn{2}{l}{c}
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"""
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row2 = list(row[:ilevels])
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ncol = 1
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coltext = ""
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def append_col():
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# write multicolumn if needed
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if ncol > 1:
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row2.append(
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f"\\multicolumn{{{ncol:d}}}{{{self.multicolumn_format}}}"
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f"{{{coltext.strip()}}}"
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)
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# don't modify where not needed
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else:
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row2.append(coltext)
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for c in row[ilevels:]:
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# if next col has text, write the previous
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if c.strip():
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if coltext:
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append_col()
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coltext = c
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ncol = 1
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# if not, add it to the previous multicolumn
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else:
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ncol += 1
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# write last column name
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if coltext:
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append_col()
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return row2
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def _format_multirow(
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self, row: List[str], ilevels: int, i: int, rows: List[Tuple[str, ...]]
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) -> List[str]:
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r"""
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Check following rows, whether row should be a multirow
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e.g.: becomes:
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a & 0 & \multirow{2}{*}{a} & 0 &
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& 1 & & 1 &
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b & 0 & \cline{1-2}
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b & 0 &
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"""
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for j in range(ilevels):
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if row[j].strip():
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nrow = 1
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for r in rows[i + 1 :]:
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if not r[j].strip():
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nrow += 1
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else:
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break
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if nrow > 1:
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# overwrite non-multirow entry
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row[j] = f"\\multirow{{{nrow:d}}}{{*}}{{{row[j].strip()}}}"
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# save when to end the current block with \cline
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self.clinebuf.append([i + nrow - 1, j + 1])
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return row
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def _print_cline(self, buf: IO[str], i: int, icol: int) -> None:
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"""
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Print clines after multirow-blocks are finished.
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"""
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for cl in self.clinebuf:
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if cl[0] == i:
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buf.write(f"\\cline{{{cl[1]:d}-{icol:d}}}\n")
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# remove entries that have been written to buffer
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self.clinebuf = [x for x in self.clinebuf if x[0] != i]
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def _write_tabular_begin(self, buf, column_format: str):
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"""
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Write the beginning of a tabular environment or
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nested table/tabular environments including caption and label.
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Parameters
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----------
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buf : string or file handle
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File path or object. If not specified, the result is returned as
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a string.
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column_format : str
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The columns format as specified in `LaTeX table format
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<https://en.wikibooks.org/wiki/LaTeX/Tables>`__ e.g 'rcl'
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for 3 columns
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"""
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if self.caption is not None or self.label is not None:
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# then write output in a nested table/tabular environment
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if self.caption is None:
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caption_ = ""
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else:
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caption_ = f"\n\\caption{{{self.caption}}}"
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if self.label is None:
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label_ = ""
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else:
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label_ = f"\n\\label{{{self.label}}}"
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buf.write(f"\\begin{{table}}\n\\centering{caption_}{label_}\n")
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else:
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# then write output only in a tabular environment
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pass
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buf.write(f"\\begin{{tabular}}{{{column_format}}}\n")
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def _write_tabular_end(self, buf):
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"""
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Write the end of a tabular environment or nested table/tabular
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environment.
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Parameters
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----------
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buf : string or file handle
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File path or object. If not specified, the result is returned as
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a string.
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"""
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buf.write("\\bottomrule\n")
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buf.write("\\end{tabular}\n")
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if self.caption is not None or self.label is not None:
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buf.write("\\end{table}\n")
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else:
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pass
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def _write_longtable_begin(self, buf, column_format: str):
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"""
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Write the beginning of a longtable environment including caption and
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label if provided by user.
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Parameters
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----------
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buf : string or file handle
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File path or object. If not specified, the result is returned as
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a string.
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column_format : str
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The columns format as specified in `LaTeX table format
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<https://en.wikibooks.org/wiki/LaTeX/Tables>`__ e.g 'rcl'
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for 3 columns
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"""
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buf.write(f"\\begin{{longtable}}{{{column_format}}}\n")
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if self.caption is not None or self.label is not None:
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if self.caption is None:
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pass
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else:
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buf.write(f"\\caption{{{self.caption}}}")
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if self.label is None:
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pass
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else:
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buf.write(f"\\label{{{self.label}}}")
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# a double-backslash is required at the end of the line
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# as discussed here:
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# https://tex.stackexchange.com/questions/219138
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buf.write("\\\\\n")
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else:
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pass
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@staticmethod
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def _write_longtable_end(buf):
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"""
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Write the end of a longtable environment.
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Parameters
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----------
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buf : string or file handle
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File path or object. If not specified, the result is returned as
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a string.
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"""
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buf.write("\\end{longtable}\n")
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