Old engine for Continuous Time Bayesian Networks. Superseded by reCTBN. 🐍
https://github.com/madlabunimib/PyCTBN
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1457 lines
94 KiB
1457 lines
94 KiB
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<li class="toctree-l1"><a class="reference internal" href="pyctbn.legacy.html">pyctbn.legacy package</a><ul>
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<li class="toctree-l2"><a class="reference internal" href="pyctbn.legacy.html#subpackages">Subpackages</a></li>
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<li class="toctree-l2"><a class="reference internal" href="pyctbn.legacy.html#module-pyctbn.legacy">Module contents</a></li>
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<li class="toctree-l2"><a class="reference internal" href="examples.html#implementing-your-own-data-importer">Implementing your own data importer</a></li>
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<li class="toctree-l2"><a class="reference internal" href="examples.html#parameters-estimation-example">Parameters Estimation Example</a></li>
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<li class="toctree-l2"><a class="reference internal" href="examples.html#structure-estimation-example">Structure Estimation Example</a></li>
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<h1 id="index">Index</h1>
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<div class="genindex-jumpbox">
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<a href="#A"><strong>A</strong></a>
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| <a href="#B"><strong>B</strong></a>
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| <a href="#C"><strong>C</strong></a>
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| <a href="#D"><strong>D</strong></a>
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| <a href="#E"><strong>E</strong></a>
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| <a href="#F"><strong>F</strong></a>
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| <a href="#G"><strong>G</strong></a>
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| <a href="#H"><strong>H</strong></a>
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| <a href="#I"><strong>I</strong></a>
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| <a href="#J"><strong>J</strong></a>
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| <a href="#M"><strong>M</strong></a>
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| <a href="#N"><strong>N</strong></a>
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| <a href="#O"><strong>O</strong></a>
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| <a href="#P"><strong>P</strong></a>
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| <a href="#R"><strong>R</strong></a>
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| <a href="#S"><strong>S</strong></a>
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| <a href="#T"><strong>T</strong></a>
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| <a href="#V"><strong>V</strong></a>
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| <a href="#W"><strong>W</strong></a>
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</div>
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<h2 id="A">A</h2>
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<table style="width: 100%" class="indextable genindextable"><tr>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="pyctbn.legacy.utility.html#pyctbn.legacy.utility.abstract_exporter.AbstractExporter">AbstractExporter (class in pyctbn.legacy.utility.abstract_exporter)</a>
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</li>
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<li><a href="pyctbn.legacy.utility.html#pyctbn.legacy.utility.abstract_importer.AbstractImporter">AbstractImporter (class in pyctbn.legacy.utility.abstract_importer)</a>
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</li>
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<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.set_of_cims.SetOfCims.actual_cims">actual_cims() (pyctbn.legacy.structure_graph.set_of_cims.SetOfCims property)</a>
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</li>
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<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.structure.Structure.add_edge">add_edge() (pyctbn.legacy.structure_graph.structure.Structure method)</a>
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</li>
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<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.network_graph.NetworkGraph.add_edges">add_edges() (pyctbn.legacy.structure_graph.network_graph.NetworkGraph method)</a>
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</li>
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<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.network_graph.NetworkGraph.add_nodes">add_nodes() (pyctbn.legacy.structure_graph.network_graph.NetworkGraph method)</a>
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</li>
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<li><a href="pyctbn.legacy.utility.html#pyctbn.legacy.utility.abstract_exporter.AbstractExporter.add_trajectory">add_trajectory() (pyctbn.legacy.utility.abstract_exporter.AbstractExporter method)</a>
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</li>
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<li><a href="pyctbn.legacy.estimators.html#pyctbn.legacy.estimators.structure_estimator.StructureEstimator.adjacency_matrix">adjacency_matrix() (pyctbn.legacy.estimators.structure_estimator.StructureEstimator method)</a>
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</li>
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</ul></td>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.another_filtering_method">another_filtering_method() (PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims method)</a>
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</li>
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<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.aux_build_p_combs_structure">aux_build_p_combs_structure() (PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph method)</a>
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</li>
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<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.aux_build_time_columns_filtering_structure_for_a_node">aux_build_time_columns_filtering_structure_for_a_node() (PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph method)</a>
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</li>
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<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.aux_build_time_scalar_indexing_structure_for_a_node">aux_build_time_scalar_indexing_structure_for_a_node() (PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph method)</a>
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</li>
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<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.aux_build_transition_columns_filtering_structure">aux_build_transition_columns_filtering_structure() (PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph method)</a>
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</li>
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<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.aux_build_transition_scalar_indexing_structure_for_a_node">aux_build_transition_scalar_indexing_structure_for_a_node() (PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph method)</a>
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</li>
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<li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.aux_import_sampled_cims">aux_import_sampled_cims() (PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior method)</a>
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</li>
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<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.aux_test_build_cims">aux_test_build_cims() (PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims method)</a>
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</li>
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<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.aux_test_init">aux_test_init() (PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims method)</a>
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</li>
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</ul></td>
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</tr></table>
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<h2 id="B">B</h2>
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<table style="width: 100%" class="indextable genindextable"><tr>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.set_of_cims.SetOfCims.build_cims">build_cims() (pyctbn.legacy.structure_graph.set_of_cims.SetOfCims method)</a>
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</li>
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<li><a href="pyctbn.legacy.estimators.html#pyctbn.legacy.estimators.structure_estimator.StructureEstimator.build_complete_graph">build_complete_graph() (pyctbn.legacy.estimators.structure_estimator.StructureEstimator static method)</a>
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</li>
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<li><a href="pyctbn.legacy.utility.html#pyctbn.legacy.utility.abstract_importer.AbstractImporter.build_list_of_samples_array">build_list_of_samples_array() (pyctbn.legacy.utility.abstract_importer.AbstractImporter method)</a>
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</li>
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<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.network_graph.NetworkGraph.build_p_comb_structure_for_a_node">build_p_comb_structure_for_a_node() (pyctbn.legacy.structure_graph.network_graph.NetworkGraph static method)</a>
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<ul>
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<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.build_p_comb_structure_for_a_node">(PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims method)</a>
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</li>
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</ul></li>
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<li><a href="pyctbn.legacy.estimators.html#pyctbn.legacy.estimators.structure_estimator.StructureEstimator.build_removable_edges_matrix">build_removable_edges_matrix() (pyctbn.legacy.estimators.structure_estimator.StructureEstimator method)</a>
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</li>
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<li><a href="pyctbn.legacy.utility.html#pyctbn.legacy.utility.abstract_importer.AbstractImporter.build_sorter">build_sorter() (pyctbn.legacy.utility.abstract_importer.AbstractImporter method)</a>
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<ul>
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<li><a href="pyctbn.legacy.utility.html#pyctbn.legacy.utility.json_importer.JsonImporter.build_sorter">(pyctbn.legacy.utility.json_importer.JsonImporter method)</a>
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</li>
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<li><a href="pyctbn.legacy.utility.html#pyctbn.legacy.utility.sample_importer.SampleImporter.build_sorter">(pyctbn.legacy.utility.sample_importer.SampleImporter method)</a>
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</li>
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</ul></li>
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</ul></td>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.sample_path.SamplePath.build_structure">build_structure() (pyctbn.legacy.structure_graph.sample_path.SamplePath method)</a>
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</li>
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<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.network_graph.NetworkGraph.build_time_columns_filtering_for_a_node">build_time_columns_filtering_for_a_node() (pyctbn.legacy.structure_graph.network_graph.NetworkGraph static method)</a>
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</li>
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<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.network_graph.NetworkGraph.build_time_scalar_indexing_structure_for_a_node">build_time_scalar_indexing_structure_for_a_node() (pyctbn.legacy.structure_graph.network_graph.NetworkGraph static method)</a>
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</li>
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<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.set_of_cims.SetOfCims.build_times_and_transitions_structures">build_times_and_transitions_structures() (pyctbn.legacy.structure_graph.set_of_cims.SetOfCims method)</a>
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</li>
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<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.sample_path.SamplePath.build_trajectories">build_trajectories() (pyctbn.legacy.structure_graph.sample_path.SamplePath method)</a>
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</li>
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<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.network_graph.NetworkGraph.build_transition_filtering_for_a_node">build_transition_filtering_for_a_node() (pyctbn.legacy.structure_graph.network_graph.NetworkGraph static method)</a>
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</li>
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<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.network_graph.NetworkGraph.build_transition_scalar_indexing_structure_for_a_node">build_transition_scalar_indexing_structure_for_a_node() (pyctbn.legacy.structure_graph.network_graph.NetworkGraph static method)</a>
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</li>
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</ul></td>
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</tr></table>
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<h2 id="C">C</h2>
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<table style="width: 100%" class="indextable genindextable"><tr>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="pyctbn.legacy.utility.html#pyctbn.legacy.utility.cache.Cache">Cache (class in pyctbn.legacy.utility.cache)</a>
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</li>
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<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix.cim">cim() (pyctbn.legacy.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix property)</a>
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</li>
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<li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.cim_equality_test">cim_equality_test() (PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior method)</a>
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</li>
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<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.network_generator.NetworkGenerator.cims">cims() (pyctbn.legacy.structure_graph.network_generator.NetworkGenerator property)</a>
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</li>
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<li><a href="pyctbn.legacy.utility.html#pyctbn.legacy.utility.json_exporter.JsonExporter.cims_to_json">cims_to_json() (pyctbn.legacy.utility.json_exporter.JsonExporter method)</a>
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</li>
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<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.structure.Structure.clean_structure_edges">clean_structure_edges() (pyctbn.legacy.structure_graph.structure.Structure method)</a>
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</li>
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<li><a href="pyctbn.legacy.utility.html#pyctbn.legacy.utility.cache.Cache.clear">clear() (pyctbn.legacy.utility.cache.Cache method)</a>
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</li>
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<li><a href="pyctbn.legacy.utility.html#pyctbn.legacy.utility.abstract_importer.AbstractImporter.clear_concatenated_frame">clear_concatenated_frame() (pyctbn.legacy.utility.abstract_importer.AbstractImporter method)</a>
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</li>
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<li><a href="pyctbn.legacy.utility.html#pyctbn.legacy.utility.json_importer.JsonImporter.clear_data_frame_list">clear_data_frame_list() (pyctbn.legacy.utility.json_importer.JsonImporter method)</a>
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</li>
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<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.network_graph.NetworkGraph.clear_indexing_filtering_structures">clear_indexing_filtering_structures() (pyctbn.legacy.structure_graph.network_graph.NetworkGraph method)</a>
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</li>
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<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.sample_path.SamplePath.clear_memory">clear_memory() (pyctbn.legacy.structure_graph.sample_path.SamplePath method)</a>
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</li>
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<li><a href="pyctbn.legacy.estimators.html#pyctbn.legacy.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.complete_test">complete_test() (pyctbn.legacy.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator method)</a>
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</li>
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<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.trajectory.Trajectory.complete_trajectory">complete_trajectory() (pyctbn.legacy.structure_graph.trajectory.Trajectory property)</a>
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</li>
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</ul></td>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix.compute_cim_coefficients">compute_cim_coefficients() (pyctbn.legacy.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix method)</a>
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</li>
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<li><a href="pyctbn.legacy.estimators.html#pyctbn.legacy.estimators.parameters_estimator.ParametersEstimator.compute_parameters_for_node">compute_parameters_for_node() (pyctbn.legacy.estimators.parameters_estimator.ParametersEstimator method)</a>
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</li>
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<li><a href="pyctbn.legacy.utility.html#pyctbn.legacy.utility.abstract_importer.AbstractImporter.compute_row_delta_in_all_samples_frames">compute_row_delta_in_all_samples_frames() (pyctbn.legacy.utility.abstract_importer.AbstractImporter method)</a>
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</li>
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<li><a href="pyctbn.legacy.utility.html#pyctbn.legacy.utility.abstract_importer.AbstractImporter.compute_row_delta_sigle_samples_frame">compute_row_delta_sigle_samples_frame() (pyctbn.legacy.utility.abstract_importer.AbstractImporter method)</a>
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</li>
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<li><a href="pyctbn.legacy.estimators.html#pyctbn.legacy.estimators.parameters_estimator.ParametersEstimator.compute_state_res_time_for_node">compute_state_res_time_for_node() (pyctbn.legacy.estimators.parameters_estimator.ParametersEstimator static method)</a>
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</li>
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<li><a href="pyctbn.legacy.estimators.html#pyctbn.legacy.estimators.parameters_estimator.ParametersEstimator.compute_state_transitions_for_a_node">compute_state_transitions_for_a_node() (pyctbn.legacy.estimators.parameters_estimator.ParametersEstimator static method)</a>
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</li>
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<li><a href="pyctbn.legacy.estimators.html#pyctbn.legacy.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.compute_thumb_value">compute_thumb_value() (pyctbn.legacy.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator method)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.utility.html#pyctbn.legacy.utility.abstract_importer.AbstractImporter.concatenated_samples">concatenated_samples() (pyctbn.legacy.utility.abstract_importer.AbstractImporter property)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix">ConditionalIntensityMatrix (class in pyctbn.legacy.structure_graph.conditional_intensity_matrix)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.optimizers.html#pyctbn.legacy.optimizers.constraint_based_optimizer.ConstraintBasedOptimizer">ConstraintBasedOptimizer (class in pyctbn.legacy.optimizers.constraint_based_optimizer)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.structure.Structure.contains_edge">contains_edge() (pyctbn.legacy.structure_graph.structure.Structure method)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.trajectory_generator.TrajectoryGenerator.CTBN_Sample">CTBN_Sample() (pyctbn.legacy.structure_graph.trajectory_generator.TrajectoryGenerator method)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.estimators.html#pyctbn.legacy.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.ctpc_algorithm">ctpc_algorithm() (pyctbn.legacy.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator method)</a>
|
|
</li>
|
|
</ul></td>
|
|
</tr></table>
|
|
|
|
<h2 id="D">D</h2>
|
|
<table style="width: 100%" class="indextable genindextable"><tr>
|
|
<td style="width: 33%; vertical-align: top;"><ul>
|
|
<li><a href="pyctbn.legacy.utility.html#pyctbn.legacy.utility.abstract_importer.AbstractImporter.dataset_id">dataset_id() (pyctbn.legacy.utility.abstract_importer.AbstractImporter method)</a>
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.utility.html#pyctbn.legacy.utility.json_importer.JsonImporter.dataset_id">(pyctbn.legacy.utility.json_importer.JsonImporter method)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.utility.html#pyctbn.legacy.utility.sample_importer.SampleImporter.dataset_id">(pyctbn.legacy.utility.sample_importer.SampleImporter method)</a>
|
|
</li>
|
|
</ul></li>
|
|
</ul></td>
|
|
<td style="width: 33%; vertical-align: top;"><ul>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.network_generator.NetworkGenerator.dyn_str">dyn_str() (pyctbn.legacy.structure_graph.network_generator.NetworkGenerator property)</a>
|
|
</li>
|
|
</ul></td>
|
|
</tr></table>
|
|
|
|
<h2 id="E">E</h2>
|
|
<table style="width: 100%" class="indextable genindextable"><tr>
|
|
<td style="width: 33%; vertical-align: top;"><ul>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.network_graph.NetworkGraph.edges">edges() (pyctbn.legacy.structure_graph.network_graph.NetworkGraph property)</a>
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.structure.Structure.edges">(pyctbn.legacy.structure_graph.structure.Structure property)</a>
|
|
</li>
|
|
</ul></li>
|
|
<li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.equality_of_cims_of_node">equality_of_cims_of_node() (PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior method)</a>
|
|
</li>
|
|
</ul></td>
|
|
<td style="width: 33%; vertical-align: top;"><ul>
|
|
<li><a href="pyctbn.legacy.estimators.html#pyctbn.legacy.estimators.structure_score_based_estimator.StructureScoreBasedEstimator.estimate_parents">estimate_parents() (pyctbn.legacy.estimators.structure_score_based_estimator.StructureScoreBasedEstimator method)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.estimators.html#pyctbn.legacy.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.estimate_structure">estimate_structure() (pyctbn.legacy.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator method)</a>
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.estimators.html#pyctbn.legacy.estimators.structure_estimator.StructureEstimator.estimate_structure">(pyctbn.legacy.estimators.structure_estimator.StructureEstimator method)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.estimators.html#pyctbn.legacy.estimators.structure_score_based_estimator.StructureScoreBasedEstimator.estimate_structure">(pyctbn.legacy.estimators.structure_score_based_estimator.StructureScoreBasedEstimator method)</a>
|
|
</li>
|
|
</ul></li>
|
|
</ul></td>
|
|
</tr></table>
|
|
|
|
<h2 id="F">F</h2>
|
|
<table style="width: 100%" class="indextable genindextable"><tr>
|
|
<td style="width: 33%; vertical-align: top;"><ul>
|
|
<li><a href="pyctbn.legacy.estimators.html#pyctbn.legacy.estimators.fam_score_calculator.FamScoreCalculator">FamScoreCalculator (class in pyctbn.legacy.estimators.fam_score_calculator)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.estimators.html#pyctbn.legacy.estimators.parameters_estimator.ParametersEstimator.fast_init">fast_init() (pyctbn.legacy.estimators.parameters_estimator.ParametersEstimator method)</a>
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.network_graph.NetworkGraph.fast_init">(pyctbn.legacy.structure_graph.network_graph.NetworkGraph method)</a>
|
|
</li>
|
|
</ul></li>
|
|
</ul></td>
|
|
<td style="width: 33%; vertical-align: top;"><ul>
|
|
<li><a href="pyctbn.legacy.utility.html#pyctbn.legacy.utility.abstract_importer.AbstractImporter.file_path">file_path() (pyctbn.legacy.utility.abstract_importer.AbstractImporter property)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.set_of_cims.SetOfCims.filter_cims_with_mask">filter_cims_with_mask() (pyctbn.legacy.structure_graph.set_of_cims.SetOfCims method)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.utility.html#pyctbn.legacy.utility.cache.Cache.find">find() (pyctbn.legacy.utility.cache.Cache method)</a>
|
|
</li>
|
|
</ul></td>
|
|
</tr></table>
|
|
|
|
<h2 id="G">G</h2>
|
|
<table style="width: 100%" class="indextable genindextable"><tr>
|
|
<td style="width: 33%; vertical-align: top;"><ul>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.network_generator.NetworkGenerator.generate_cims">generate_cims() (pyctbn.legacy.structure_graph.network_generator.NetworkGenerator method)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.network_generator.NetworkGenerator.generate_graph">generate_graph() (pyctbn.legacy.structure_graph.network_generator.NetworkGenerator method)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.estimators.html#pyctbn.legacy.estimators.structure_estimator.StructureEstimator.generate_possible_sub_sets_of_size">generate_possible_sub_sets_of_size() (pyctbn.legacy.estimators.structure_estimator.StructureEstimator static method)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.set_of_cims.SetOfCims.get_cims_number">get_cims_number() (pyctbn.legacy.structure_graph.set_of_cims.SetOfCims method)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.estimators.html#pyctbn.legacy.estimators.fam_score_calculator.FamScoreCalculator.get_fam_score">get_fam_score() (pyctbn.legacy.estimators.fam_score_calculator.FamScoreCalculator method)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.structure.Structure.get_node_id">get_node_id() (pyctbn.legacy.structure_graph.structure.Structure method)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.network_graph.NetworkGraph.get_node_indx">get_node_indx() (pyctbn.legacy.structure_graph.network_graph.NetworkGraph method)</a>
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.structure.Structure.get_node_indx">(pyctbn.legacy.structure_graph.structure.Structure method)</a>
|
|
</li>
|
|
</ul></li>
|
|
</ul></td>
|
|
<td style="width: 33%; vertical-align: top;"><ul>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.network_graph.NetworkGraph.get_ordered_by_indx_set_of_parents">get_ordered_by_indx_set_of_parents() (pyctbn.legacy.structure_graph.network_graph.NetworkGraph method)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.network_graph.NetworkGraph.get_parents_by_id">get_parents_by_id() (pyctbn.legacy.structure_graph.network_graph.NetworkGraph method)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.network_graph.NetworkGraph.get_positional_node_indx">get_positional_node_indx() (pyctbn.legacy.structure_graph.network_graph.NetworkGraph method)</a>
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.structure.Structure.get_positional_node_indx">(pyctbn.legacy.structure_graph.structure.Structure method)</a>
|
|
</li>
|
|
</ul></li>
|
|
<li><a href="pyctbn.legacy.estimators.html#pyctbn.legacy.estimators.structure_score_based_estimator.StructureScoreBasedEstimator.get_score_from_graph">get_score_from_graph() (pyctbn.legacy.estimators.structure_score_based_estimator.StructureScoreBasedEstimator method)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.network_graph.NetworkGraph.get_states_number">get_states_number() (pyctbn.legacy.structure_graph.network_graph.NetworkGraph method)</a>
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.structure.Structure.get_states_number">(pyctbn.legacy.structure_graph.structure.Structure method)</a>
|
|
</li>
|
|
</ul></li>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.network_generator.NetworkGenerator.graph">graph() (pyctbn.legacy.structure_graph.network_generator.NetworkGenerator property)</a>
|
|
</li>
|
|
</ul></td>
|
|
</tr></table>
|
|
|
|
<h2 id="H">H</h2>
|
|
<table style="width: 100%" class="indextable genindextable"><tr>
|
|
<td style="width: 33%; vertical-align: top;"><ul>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.network_graph.NetworkGraph.has_edge">has_edge() (pyctbn.legacy.structure_graph.network_graph.NetworkGraph method)</a>
|
|
</li>
|
|
</ul></td>
|
|
<td style="width: 33%; vertical-align: top;"><ul>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.sample_path.SamplePath.has_prior_net_structure">has_prior_net_structure() (pyctbn.legacy.structure_graph.sample_path.SamplePath property)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.optimizers.html#pyctbn.legacy.optimizers.hill_climbing_search.HillClimbing">HillClimbing (class in pyctbn.legacy.optimizers.hill_climbing_search)</a>
|
|
</li>
|
|
</ul></td>
|
|
</tr></table>
|
|
|
|
<h2 id="I">I</h2>
|
|
<table style="width: 100%" class="indextable genindextable"><tr>
|
|
<td style="width: 33%; vertical-align: top;"><ul>
|
|
<li><a href="pyctbn.legacy.utility.html#pyctbn.legacy.utility.json_importer.JsonImporter.import_data">import_data() (pyctbn.legacy.utility.json_importer.JsonImporter method)</a>
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.utility.html#pyctbn.legacy.utility.sample_importer.SampleImporter.import_data">(pyctbn.legacy.utility.sample_importer.SampleImporter method)</a>
|
|
</li>
|
|
</ul></li>
|
|
<li><a href="pyctbn.legacy.utility.html#pyctbn.legacy.utility.json_importer.JsonImporter.import_sampled_cims">import_sampled_cims() (pyctbn.legacy.utility.json_importer.JsonImporter method)</a>
|
|
</li>
|
|
</ul></td>
|
|
<td style="width: 33%; vertical-align: top;"><ul>
|
|
<li><a href="pyctbn.legacy.utility.html#pyctbn.legacy.utility.json_importer.JsonImporter.import_structure">import_structure() (pyctbn.legacy.utility.json_importer.JsonImporter method)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.utility.html#pyctbn.legacy.utility.json_importer.JsonImporter.import_trajectories">import_trajectories() (pyctbn.legacy.utility.json_importer.JsonImporter method)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.utility.html#pyctbn.legacy.utility.json_importer.JsonImporter.import_variables">import_variables() (pyctbn.legacy.utility.json_importer.JsonImporter method)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.estimators.html#pyctbn.legacy.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.independence_test">independence_test() (pyctbn.legacy.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator method)</a>
|
|
</li>
|
|
</ul></td>
|
|
</tr></table>
|
|
|
|
<h2 id="J">J</h2>
|
|
<table style="width: 100%" class="indextable genindextable"><tr>
|
|
<td style="width: 33%; vertical-align: top;"><ul>
|
|
<li><a href="pyctbn.legacy.utility.html#pyctbn.legacy.utility.json_exporter.JsonExporter">JsonExporter (class in pyctbn.legacy.utility.json_exporter)</a>
|
|
</li>
|
|
</ul></td>
|
|
<td style="width: 33%; vertical-align: top;"><ul>
|
|
<li><a href="pyctbn.legacy.utility.html#pyctbn.legacy.utility.json_importer.JsonImporter">JsonImporter (class in pyctbn.legacy.utility.json_importer)</a>
|
|
</li>
|
|
</ul></td>
|
|
</tr></table>
|
|
|
|
<h2 id="M">M</h2>
|
|
<table style="width: 100%" class="indextable genindextable"><tr>
|
|
<td style="width: 33%; vertical-align: top;"><ul>
|
|
<li><a href="pyctbn.legacy.estimators.html#pyctbn.legacy.estimators.fam_score_calculator.FamScoreCalculator.marginal_likelihood_q">marginal_likelihood_q() (pyctbn.legacy.estimators.fam_score_calculator.FamScoreCalculator method)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.estimators.html#pyctbn.legacy.estimators.fam_score_calculator.FamScoreCalculator.marginal_likelihood_theta">marginal_likelihood_theta() (pyctbn.legacy.estimators.fam_score_calculator.FamScoreCalculator method)</a>
|
|
</li>
|
|
<li>
|
|
module
|
|
|
|
<ul>
|
|
<li><a href="PyCTBN.html#module-PyCTBN">PyCTBN</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.html#module-pyctbn.legacy">pyctbn.legacy</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.estimators.html#module-pyctbn.legacy.estimators">pyctbn.legacy.estimators</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.estimators.html#module-pyctbn.legacy.estimators.fam_score_calculator">pyctbn.legacy.estimators.fam_score_calculator</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.estimators.html#module-pyctbn.legacy.estimators.parameters_estimator">pyctbn.legacy.estimators.parameters_estimator</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.estimators.html#module-pyctbn.legacy.estimators.structure_constraint_based_estimator">pyctbn.legacy.estimators.structure_constraint_based_estimator</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.estimators.html#module-pyctbn.legacy.estimators.structure_estimator">pyctbn.legacy.estimators.structure_estimator</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.estimators.html#module-pyctbn.legacy.estimators.structure_score_based_estimator">pyctbn.legacy.estimators.structure_score_based_estimator</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.optimizers.html#module-pyctbn.legacy.optimizers">pyctbn.legacy.optimizers</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.optimizers.html#module-pyctbn.legacy.optimizers.constraint_based_optimizer">pyctbn.legacy.optimizers.constraint_based_optimizer</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.optimizers.html#module-pyctbn.legacy.optimizers.hill_climbing_search">pyctbn.legacy.optimizers.hill_climbing_search</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.optimizers.html#module-pyctbn.legacy.optimizers.optimizer">pyctbn.legacy.optimizers.optimizer</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.optimizers.html#module-pyctbn.legacy.optimizers.tabu_search">pyctbn.legacy.optimizers.tabu_search</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#module-pyctbn.legacy.structure_graph">pyctbn.legacy.structure_graph</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#module-pyctbn.legacy.structure_graph.conditional_intensity_matrix">pyctbn.legacy.structure_graph.conditional_intensity_matrix</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#module-pyctbn.legacy.structure_graph.network_generator">pyctbn.legacy.structure_graph.network_generator</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#module-pyctbn.legacy.structure_graph.network_graph">pyctbn.legacy.structure_graph.network_graph</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#module-pyctbn.legacy.structure_graph.sample_path">pyctbn.legacy.structure_graph.sample_path</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#module-pyctbn.legacy.structure_graph.set_of_cims">pyctbn.legacy.structure_graph.set_of_cims</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#module-pyctbn.legacy.structure_graph.structure">pyctbn.legacy.structure_graph.structure</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#module-pyctbn.legacy.structure_graph.trajectory">pyctbn.legacy.structure_graph.trajectory</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#module-pyctbn.legacy.structure_graph.trajectory_generator">pyctbn.legacy.structure_graph.trajectory_generator</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.utility.html#module-pyctbn.legacy.utility">pyctbn.legacy.utility</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.utility.html#module-pyctbn.legacy.utility.abstract_exporter">pyctbn.legacy.utility.abstract_exporter</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.utility.html#module-pyctbn.legacy.utility.abstract_importer">pyctbn.legacy.utility.abstract_importer</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.utility.html#module-pyctbn.legacy.utility.cache">pyctbn.legacy.utility.cache</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.utility.html#module-pyctbn.legacy.utility.json_exporter">pyctbn.legacy.utility.json_exporter</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.utility.html#module-pyctbn.legacy.utility.json_importer">pyctbn.legacy.utility.json_importer</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.utility.html#module-pyctbn.legacy.utility.sample_importer">pyctbn.legacy.utility.sample_importer</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.html#module-PyCTBN.tests">PyCTBN.tests</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.estimators.html#module-PyCTBN.tests.estimators">PyCTBN.tests.estimators</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.estimators.html#module-PyCTBN.tests.estimators.test_parameters_estimator">PyCTBN.tests.estimators.test_parameters_estimator</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.estimators.html#module-PyCTBN.tests.estimators.test_structure_constraint_based_estimator">PyCTBN.tests.estimators.test_structure_constraint_based_estimator</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.estimators.html#module-PyCTBN.tests.estimators.test_structure_estimator">PyCTBN.tests.estimators.test_structure_estimator</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.estimators.html#module-PyCTBN.tests.estimators.test_structure_score_based_estimator">PyCTBN.tests.estimators.test_structure_score_based_estimator</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.optimizers.html#module-PyCTBN.tests.optimizers">PyCTBN.tests.optimizers</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.optimizers.html#module-PyCTBN.tests.optimizers.test_hill_climbing_search">PyCTBN.tests.optimizers.test_hill_climbing_search</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.optimizers.html#module-PyCTBN.tests.optimizers.test_tabu_search">PyCTBN.tests.optimizers.test_tabu_search</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph">PyCTBN.tests.structure_graph</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_cim">PyCTBN.tests.structure_graph.test_cim</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_networkgenerator">PyCTBN.tests.structure_graph.test_networkgenerator</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_networkgraph">PyCTBN.tests.structure_graph.test_networkgraph</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_sample_path">PyCTBN.tests.structure_graph.test_sample_path</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_setofcims">PyCTBN.tests.structure_graph.test_setofcims</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_structure">PyCTBN.tests.structure_graph.test_structure</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_trajectory">PyCTBN.tests.structure_graph.test_trajectory</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_trajectorygenerator">PyCTBN.tests.structure_graph.test_trajectorygenerator</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.utility.html#module-PyCTBN.tests.utility">PyCTBN.tests.utility</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.utility.html#module-PyCTBN.tests.utility.test_cache">PyCTBN.tests.utility.test_cache</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.utility.html#module-PyCTBN.tests.utility.test_json_importer">PyCTBN.tests.utility.test_json_importer</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.utility.html#module-PyCTBN.tests.utility.test_sample_importer">PyCTBN.tests.utility.test_sample_importer</a>
|
|
</li>
|
|
</ul></li>
|
|
</ul></td>
|
|
<td style="width: 33%; vertical-align: top;"><ul>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.trajectory_generator.TrajectoryGenerator.multi_trajectory">multi_trajectory() (pyctbn.legacy.structure_graph.trajectory_generator.TrajectoryGenerator method)</a>
|
|
</li>
|
|
</ul></td>
|
|
</tr></table>
|
|
|
|
<h2 id="N">N</h2>
|
|
<table style="width: 100%" class="indextable genindextable"><tr>
|
|
<td style="width: 33%; vertical-align: top;"><ul>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.network_generator.NetworkGenerator">NetworkGenerator (class in pyctbn.legacy.structure_graph.network_generator)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.network_graph.NetworkGraph">NetworkGraph (class in pyctbn.legacy.structure_graph.network_graph)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.network_graph.NetworkGraph.nodes">nodes() (pyctbn.legacy.structure_graph.network_graph.NetworkGraph property)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.network_graph.NetworkGraph.nodes_indexes">nodes_indexes() (pyctbn.legacy.structure_graph.network_graph.NetworkGraph property)</a>
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.structure.Structure.nodes_indexes">(pyctbn.legacy.structure_graph.structure.Structure property)</a>
|
|
</li>
|
|
</ul></li>
|
|
</ul></td>
|
|
<td style="width: 33%; vertical-align: top;"><ul>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.structure.Structure.nodes_labels">nodes_labels() (pyctbn.legacy.structure_graph.structure.Structure property)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.network_graph.NetworkGraph.nodes_values">nodes_values() (pyctbn.legacy.structure_graph.network_graph.NetworkGraph property)</a>
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.structure.Structure.nodes_values">(pyctbn.legacy.structure_graph.structure.Structure property)</a>
|
|
</li>
|
|
</ul></li>
|
|
<li><a href="pyctbn.legacy.utility.html#pyctbn.legacy.utility.json_importer.JsonImporter.normalize_trajectories">normalize_trajectories() (pyctbn.legacy.utility.json_importer.JsonImporter method)</a>
|
|
</li>
|
|
</ul></td>
|
|
</tr></table>
|
|
|
|
<h2 id="O">O</h2>
|
|
<table style="width: 100%" class="indextable genindextable"><tr>
|
|
<td style="width: 33%; vertical-align: top;"><ul>
|
|
<li><a href="pyctbn.legacy.estimators.html#pyctbn.legacy.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator.one_iteration_of_CTPC_algorithm">one_iteration_of_CTPC_algorithm() (pyctbn.legacy.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator method)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.utility.html#pyctbn.legacy.utility.json_importer.JsonImporter.one_level_normalizing">one_level_normalizing() (pyctbn.legacy.utility.json_importer.JsonImporter method)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.optimizers.html#pyctbn.legacy.optimizers.constraint_based_optimizer.ConstraintBasedOptimizer.optimize_structure">optimize_structure() (pyctbn.legacy.optimizers.constraint_based_optimizer.ConstraintBasedOptimizer method)</a>
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.optimizers.html#pyctbn.legacy.optimizers.hill_climbing_search.HillClimbing.optimize_structure">(pyctbn.legacy.optimizers.hill_climbing_search.HillClimbing method)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.optimizers.html#pyctbn.legacy.optimizers.optimizer.Optimizer.optimize_structure">(pyctbn.legacy.optimizers.optimizer.Optimizer method)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.optimizers.html#pyctbn.legacy.optimizers.tabu_search.TabuSearch.optimize_structure">(pyctbn.legacy.optimizers.tabu_search.TabuSearch method)</a>
|
|
</li>
|
|
</ul></li>
|
|
</ul></td>
|
|
<td style="width: 33%; vertical-align: top;"><ul>
|
|
<li><a href="pyctbn.legacy.optimizers.html#pyctbn.legacy.optimizers.optimizer.Optimizer">Optimizer (class in pyctbn.legacy.optimizers.optimizer)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.utility.html#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.ordered">ordered() (PyCTBN.tests.utility.test_json_importer.TestJsonImporter method)</a>
|
|
|
|
<ul>
|
|
<li><a href="PyCTBN.tests.utility.html#PyCTBN.tests.utility.test_sample_importer.TestSampleImporter.ordered">(PyCTBN.tests.utility.test_sample_importer.TestSampleImporter method)</a>
|
|
</li>
|
|
</ul></li>
|
|
<li><a href="pyctbn.legacy.utility.html#pyctbn.legacy.utility.abstract_exporter.AbstractExporter.out_file">out_file() (pyctbn.legacy.utility.abstract_exporter.AbstractExporter method)</a>
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.utility.html#pyctbn.legacy.utility.json_exporter.JsonExporter.out_file">(pyctbn.legacy.utility.json_exporter.JsonExporter method)</a>
|
|
</li>
|
|
</ul></li>
|
|
</ul></td>
|
|
</tr></table>
|
|
|
|
<h2 id="P">P</h2>
|
|
<table style="width: 100%" class="indextable genindextable"><tr>
|
|
<td style="width: 33%; vertical-align: top;"><ul>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.network_graph.NetworkGraph.p_combs">p_combs() (pyctbn.legacy.structure_graph.network_graph.NetworkGraph property)</a>
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.set_of_cims.SetOfCims.p_combs">(pyctbn.legacy.structure_graph.set_of_cims.SetOfCims property)</a>
|
|
</li>
|
|
</ul></li>
|
|
<li><a href="pyctbn.legacy.estimators.html#pyctbn.legacy.estimators.parameters_estimator.ParametersEstimator">ParametersEstimator (class in pyctbn.legacy.estimators.parameters_estimator)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.utility.html#pyctbn.legacy.utility.cache.Cache.put">put() (pyctbn.legacy.utility.cache.Cache method)</a>
|
|
</li>
|
|
<li>
|
|
PyCTBN
|
|
|
|
<ul>
|
|
<li><a href="PyCTBN.html#module-PyCTBN">module</a>
|
|
</li>
|
|
</ul></li>
|
|
<li>
|
|
pyctbn.legacy
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.html#module-pyctbn.legacy">module</a>
|
|
</li>
|
|
</ul></li>
|
|
<li>
|
|
pyctbn.legacy.estimators
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.estimators.html#module-pyctbn.legacy.estimators">module</a>
|
|
</li>
|
|
</ul></li>
|
|
<li>
|
|
pyctbn.legacy.estimators.fam_score_calculator
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.estimators.html#module-pyctbn.legacy.estimators.fam_score_calculator">module</a>
|
|
</li>
|
|
</ul></li>
|
|
<li>
|
|
pyctbn.legacy.estimators.parameters_estimator
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.estimators.html#module-pyctbn.legacy.estimators.parameters_estimator">module</a>
|
|
</li>
|
|
</ul></li>
|
|
<li>
|
|
pyctbn.legacy.estimators.structure_constraint_based_estimator
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.estimators.html#module-pyctbn.legacy.estimators.structure_constraint_based_estimator">module</a>
|
|
</li>
|
|
</ul></li>
|
|
<li>
|
|
pyctbn.legacy.estimators.structure_estimator
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.estimators.html#module-pyctbn.legacy.estimators.structure_estimator">module</a>
|
|
</li>
|
|
</ul></li>
|
|
<li>
|
|
pyctbn.legacy.estimators.structure_score_based_estimator
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.estimators.html#module-pyctbn.legacy.estimators.structure_score_based_estimator">module</a>
|
|
</li>
|
|
</ul></li>
|
|
<li>
|
|
pyctbn.legacy.optimizers
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.optimizers.html#module-pyctbn.legacy.optimizers">module</a>
|
|
</li>
|
|
</ul></li>
|
|
<li>
|
|
pyctbn.legacy.optimizers.constraint_based_optimizer
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.optimizers.html#module-pyctbn.legacy.optimizers.constraint_based_optimizer">module</a>
|
|
</li>
|
|
</ul></li>
|
|
<li>
|
|
pyctbn.legacy.optimizers.hill_climbing_search
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.optimizers.html#module-pyctbn.legacy.optimizers.hill_climbing_search">module</a>
|
|
</li>
|
|
</ul></li>
|
|
<li>
|
|
pyctbn.legacy.optimizers.optimizer
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.optimizers.html#module-pyctbn.legacy.optimizers.optimizer">module</a>
|
|
</li>
|
|
</ul></li>
|
|
<li>
|
|
pyctbn.legacy.optimizers.tabu_search
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.optimizers.html#module-pyctbn.legacy.optimizers.tabu_search">module</a>
|
|
</li>
|
|
</ul></li>
|
|
<li>
|
|
pyctbn.legacy.structure_graph
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#module-pyctbn.legacy.structure_graph">module</a>
|
|
</li>
|
|
</ul></li>
|
|
<li>
|
|
pyctbn.legacy.structure_graph.conditional_intensity_matrix
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#module-pyctbn.legacy.structure_graph.conditional_intensity_matrix">module</a>
|
|
</li>
|
|
</ul></li>
|
|
<li>
|
|
pyctbn.legacy.structure_graph.network_generator
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#module-pyctbn.legacy.structure_graph.network_generator">module</a>
|
|
</li>
|
|
</ul></li>
|
|
<li>
|
|
pyctbn.legacy.structure_graph.network_graph
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#module-pyctbn.legacy.structure_graph.network_graph">module</a>
|
|
</li>
|
|
</ul></li>
|
|
<li>
|
|
pyctbn.legacy.structure_graph.sample_path
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#module-pyctbn.legacy.structure_graph.sample_path">module</a>
|
|
</li>
|
|
</ul></li>
|
|
<li>
|
|
pyctbn.legacy.structure_graph.set_of_cims
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#module-pyctbn.legacy.structure_graph.set_of_cims">module</a>
|
|
</li>
|
|
</ul></li>
|
|
<li>
|
|
pyctbn.legacy.structure_graph.structure
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#module-pyctbn.legacy.structure_graph.structure">module</a>
|
|
</li>
|
|
</ul></li>
|
|
<li>
|
|
pyctbn.legacy.structure_graph.trajectory
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#module-pyctbn.legacy.structure_graph.trajectory">module</a>
|
|
</li>
|
|
</ul></li>
|
|
<li>
|
|
pyctbn.legacy.structure_graph.trajectory_generator
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#module-pyctbn.legacy.structure_graph.trajectory_generator">module</a>
|
|
</li>
|
|
</ul></li>
|
|
<li>
|
|
pyctbn.legacy.utility
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.utility.html#module-pyctbn.legacy.utility">module</a>
|
|
</li>
|
|
</ul></li>
|
|
<li>
|
|
pyctbn.legacy.utility.abstract_exporter
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.utility.html#module-pyctbn.legacy.utility.abstract_exporter">module</a>
|
|
</li>
|
|
</ul></li>
|
|
<li>
|
|
pyctbn.legacy.utility.abstract_importer
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.utility.html#module-pyctbn.legacy.utility.abstract_importer">module</a>
|
|
</li>
|
|
</ul></li>
|
|
</ul></td>
|
|
<td style="width: 33%; vertical-align: top;"><ul>
|
|
<li>
|
|
pyctbn.legacy.utility.cache
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.utility.html#module-pyctbn.legacy.utility.cache">module</a>
|
|
</li>
|
|
</ul></li>
|
|
<li>
|
|
pyctbn.legacy.utility.json_exporter
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.utility.html#module-pyctbn.legacy.utility.json_exporter">module</a>
|
|
</li>
|
|
</ul></li>
|
|
<li>
|
|
pyctbn.legacy.utility.json_importer
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.utility.html#module-pyctbn.legacy.utility.json_importer">module</a>
|
|
</li>
|
|
</ul></li>
|
|
<li>
|
|
pyctbn.legacy.utility.sample_importer
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.utility.html#module-pyctbn.legacy.utility.sample_importer">module</a>
|
|
</li>
|
|
</ul></li>
|
|
<li>
|
|
PyCTBN.tests
|
|
|
|
<ul>
|
|
<li><a href="PyCTBN.tests.html#module-PyCTBN.tests">module</a>
|
|
</li>
|
|
</ul></li>
|
|
<li>
|
|
PyCTBN.tests.estimators
|
|
|
|
<ul>
|
|
<li><a href="PyCTBN.tests.estimators.html#module-PyCTBN.tests.estimators">module</a>
|
|
</li>
|
|
</ul></li>
|
|
<li>
|
|
PyCTBN.tests.estimators.test_parameters_estimator
|
|
|
|
<ul>
|
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<li><a href="PyCTBN.tests.estimators.html#module-PyCTBN.tests.estimators.test_parameters_estimator">module</a>
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</li>
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</ul></li>
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<li>
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PyCTBN.tests.estimators.test_structure_constraint_based_estimator
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<ul>
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<li><a href="PyCTBN.tests.estimators.html#module-PyCTBN.tests.estimators.test_structure_constraint_based_estimator">module</a>
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</li>
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</ul></li>
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<li>
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PyCTBN.tests.estimators.test_structure_estimator
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<ul>
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<li><a href="PyCTBN.tests.estimators.html#module-PyCTBN.tests.estimators.test_structure_estimator">module</a>
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</li>
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</ul></li>
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<li>
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PyCTBN.tests.estimators.test_structure_score_based_estimator
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<ul>
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<li><a href="PyCTBN.tests.estimators.html#module-PyCTBN.tests.estimators.test_structure_score_based_estimator">module</a>
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</li>
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</ul></li>
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<li>
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PyCTBN.tests.optimizers
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<ul>
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<li><a href="PyCTBN.tests.optimizers.html#module-PyCTBN.tests.optimizers">module</a>
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</li>
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</ul></li>
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<li>
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PyCTBN.tests.optimizers.test_hill_climbing_search
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<ul>
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<li><a href="PyCTBN.tests.optimizers.html#module-PyCTBN.tests.optimizers.test_hill_climbing_search">module</a>
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</li>
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</ul></li>
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<li>
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PyCTBN.tests.optimizers.test_tabu_search
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<ul>
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<li><a href="PyCTBN.tests.optimizers.html#module-PyCTBN.tests.optimizers.test_tabu_search">module</a>
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</li>
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</ul></li>
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<li>
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PyCTBN.tests.structure_graph
|
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<ul>
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<li><a href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph">module</a>
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</li>
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</ul></li>
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<li>
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PyCTBN.tests.structure_graph.test_cim
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<ul>
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<li><a href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_cim">module</a>
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</li>
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</ul></li>
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<li>
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PyCTBN.tests.structure_graph.test_networkgenerator
|
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<ul>
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<li><a href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_networkgenerator">module</a>
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</li>
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</ul></li>
|
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<li>
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PyCTBN.tests.structure_graph.test_networkgraph
|
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<ul>
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<li><a href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_networkgraph">module</a>
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</li>
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</ul></li>
|
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<li>
|
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PyCTBN.tests.structure_graph.test_sample_path
|
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|
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<ul>
|
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<li><a href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_sample_path">module</a>
|
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</li>
|
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</ul></li>
|
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<li>
|
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PyCTBN.tests.structure_graph.test_setofcims
|
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|
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<ul>
|
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<li><a href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_setofcims">module</a>
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</li>
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</ul></li>
|
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<li>
|
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PyCTBN.tests.structure_graph.test_structure
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<ul>
|
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<li><a href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_structure">module</a>
|
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</li>
|
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</ul></li>
|
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<li>
|
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PyCTBN.tests.structure_graph.test_trajectory
|
|
|
|
<ul>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_trajectory">module</a>
|
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</li>
|
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</ul></li>
|
|
<li>
|
|
PyCTBN.tests.structure_graph.test_trajectorygenerator
|
|
|
|
<ul>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#module-PyCTBN.tests.structure_graph.test_trajectorygenerator">module</a>
|
|
</li>
|
|
</ul></li>
|
|
<li>
|
|
PyCTBN.tests.utility
|
|
|
|
<ul>
|
|
<li><a href="PyCTBN.tests.utility.html#module-PyCTBN.tests.utility">module</a>
|
|
</li>
|
|
</ul></li>
|
|
<li>
|
|
PyCTBN.tests.utility.test_cache
|
|
|
|
<ul>
|
|
<li><a href="PyCTBN.tests.utility.html#module-PyCTBN.tests.utility.test_cache">module</a>
|
|
</li>
|
|
</ul></li>
|
|
<li>
|
|
PyCTBN.tests.utility.test_json_importer
|
|
|
|
<ul>
|
|
<li><a href="PyCTBN.tests.utility.html#module-PyCTBN.tests.utility.test_json_importer">module</a>
|
|
</li>
|
|
</ul></li>
|
|
<li>
|
|
PyCTBN.tests.utility.test_sample_importer
|
|
|
|
<ul>
|
|
<li><a href="PyCTBN.tests.utility.html#module-PyCTBN.tests.utility.test_sample_importer">module</a>
|
|
</li>
|
|
</ul></li>
|
|
</ul></td>
|
|
</tr></table>
|
|
|
|
<h2 id="R">R</h2>
|
|
<table style="width: 100%" class="indextable genindextable"><tr>
|
|
<td style="width: 33%; vertical-align: top;"><ul>
|
|
<li><a href="pyctbn.legacy.utility.html#pyctbn.legacy.utility.json_importer.JsonImporter.read_json_file">read_json_file() (pyctbn.legacy.utility.json_importer.JsonImporter method)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.structure.Structure.remove_edge">remove_edge() (pyctbn.legacy.structure_graph.structure.Structure method)</a>
|
|
</li>
|
|
</ul></td>
|
|
<td style="width: 33%; vertical-align: top;"><ul>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.network_graph.NetworkGraph.remove_edges">remove_edges() (pyctbn.legacy.structure_graph.network_graph.NetworkGraph method)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.network_graph.NetworkGraph.remove_node">remove_node() (pyctbn.legacy.structure_graph.network_graph.NetworkGraph method)</a>
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.structure.Structure.remove_node">(pyctbn.legacy.structure_graph.structure.Structure method)</a>
|
|
</li>
|
|
</ul></li>
|
|
</ul></td>
|
|
</tr></table>
|
|
|
|
<h2 id="S">S</h2>
|
|
<table style="width: 100%" class="indextable genindextable"><tr>
|
|
<td style="width: 33%; vertical-align: top;"><ul>
|
|
<li><a href="pyctbn.legacy.utility.html#pyctbn.legacy.utility.sample_importer.SampleImporter">SampleImporter (class in pyctbn.legacy.utility.sample_importer)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.sample_path.SamplePath">SamplePath (class in pyctbn.legacy.structure_graph.sample_path)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.estimators.html#pyctbn.legacy.estimators.structure_estimator.StructureEstimator.save_plot_estimated_structure_graph">save_plot_estimated_structure_graph() (pyctbn.legacy.estimators.structure_estimator.StructureEstimator method)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.estimators.html#pyctbn.legacy.estimators.structure_estimator.StructureEstimator.save_results">save_results() (pyctbn.legacy.estimators.structure_estimator.StructureEstimator method)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.set_of_cims.SetOfCims">SetOfCims (class in pyctbn.legacy.structure_graph.set_of_cims)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.setUpClass">setUpClass() (PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior class method)</a>
|
|
|
|
<ul>
|
|
<li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_structure_constraint_based_estimator.TestStructureConstraintBasedEstimator.setUpClass">(PyCTBN.tests.estimators.test_structure_constraint_based_estimator.TestStructureConstraintBasedEstimator class method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.setUpClass">(PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator class method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator.setUpClass">(PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator class method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.optimizers.html#PyCTBN.tests.optimizers.test_hill_climbing_search.TestHillClimbingSearch.setUpClass">(PyCTBN.tests.optimizers.test_hill_climbing_search.TestHillClimbingSearch class method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.optimizers.html#PyCTBN.tests.optimizers.test_tabu_search.TestTabuSearch.setUpClass">(PyCTBN.tests.optimizers.test_tabu_search.TestTabuSearch class method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix.setUpClass">(PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix class method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.setUpClass">(PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph class method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.setUpClass">(PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath class method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.setUpClass">(PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims class method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_structure.TestStructure.setUpClass">(PyCTBN.tests.structure_graph.test_structure.TestStructure class method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_trajectory.TestTrajectory.setUpClass">(PyCTBN.tests.structure_graph.test_trajectory.TestTrajectory class method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_trajectorygenerator.TestTrajectoryGenerator.setUpClass">(PyCTBN.tests.structure_graph.test_trajectorygenerator.TestTrajectoryGenerator class method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.utility.html#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.setUpClass">(PyCTBN.tests.utility.test_json_importer.TestJsonImporter class method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.utility.html#PyCTBN.tests.utility.test_sample_importer.TestSampleImporter.setUpClass">(PyCTBN.tests.utility.test_sample_importer.TestSampleImporter class method)</a>
|
|
</li>
|
|
</ul></li>
|
|
</ul></td>
|
|
<td style="width: 33%; vertical-align: top;"><ul>
|
|
<li><a href="pyctbn.legacy.estimators.html#pyctbn.legacy.estimators.fam_score_calculator.FamScoreCalculator.single_cim_xu_marginal_likelihood_q">single_cim_xu_marginal_likelihood_q() (pyctbn.legacy.estimators.fam_score_calculator.FamScoreCalculator method)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.estimators.html#pyctbn.legacy.estimators.fam_score_calculator.FamScoreCalculator.single_cim_xu_marginal_likelihood_theta">single_cim_xu_marginal_likelihood_theta() (pyctbn.legacy.estimators.fam_score_calculator.FamScoreCalculator method)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.estimators.html#pyctbn.legacy.estimators.fam_score_calculator.FamScoreCalculator.single_internal_cim_xxu_marginal_likelihood_theta">single_internal_cim_xxu_marginal_likelihood_theta() (pyctbn.legacy.estimators.fam_score_calculator.FamScoreCalculator method)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.trajectory.Trajectory.size">size() (pyctbn.legacy.structure_graph.trajectory.Trajectory method)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.utility.html#pyctbn.legacy.utility.abstract_importer.AbstractImporter.sorter">sorter() (pyctbn.legacy.utility.abstract_importer.AbstractImporter property)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.estimators.html#pyctbn.legacy.estimators.structure_estimator.StructureEstimator.spurious_edges">spurious_edges() (pyctbn.legacy.estimators.structure_estimator.StructureEstimator method)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix.state_residence_times">state_residence_times() (pyctbn.legacy.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix property)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix.state_transition_matrix">state_transition_matrix() (pyctbn.legacy.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix property)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.structure.Structure">Structure (class in pyctbn.legacy.structure_graph.structure)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.sample_path.SamplePath.structure">structure() (pyctbn.legacy.structure_graph.sample_path.SamplePath property)</a>
|
|
|
|
<ul>
|
|
<li><a href="pyctbn.legacy.utility.html#pyctbn.legacy.utility.abstract_importer.AbstractImporter.structure">(pyctbn.legacy.utility.abstract_importer.AbstractImporter property)</a>
|
|
</li>
|
|
</ul></li>
|
|
<li><a href="pyctbn.legacy.estimators.html#pyctbn.legacy.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator">StructureConstraintBasedEstimator (class in pyctbn.legacy.estimators.structure_constraint_based_estimator)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.estimators.html#pyctbn.legacy.estimators.structure_estimator.StructureEstimator">StructureEstimator (class in pyctbn.legacy.estimators.structure_estimator)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.estimators.html#pyctbn.legacy.estimators.structure_score_based_estimator.StructureScoreBasedEstimator">StructureScoreBasedEstimator (class in pyctbn.legacy.estimators.structure_score_based_estimator)</a>
|
|
</li>
|
|
</ul></td>
|
|
</tr></table>
|
|
|
|
<h2 id="T">T</h2>
|
|
<table style="width: 100%" class="indextable genindextable"><tr>
|
|
<td style="width: 33%; vertical-align: top;"><ul>
|
|
<li><a href="pyctbn.legacy.optimizers.html#pyctbn.legacy.optimizers.tabu_search.TabuSearch">TabuSearch (class in pyctbn.legacy.optimizers.tabu_search)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_add_edges">test_add_edges() (PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_add_nodes">test_add_nodes() (PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_adjacency_matrix">test_adjacency_matrix() (PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_buid_samplepath_no_concatenated_samples">test_buid_samplepath_no_concatenated_samples() (PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_buid_samplepath_no_variables">test_buid_samplepath_no_variables() (PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.test_build_cims">test_build_cims() (PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_build_complete_graph">test_build_complete_graph() (PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_build_p_combs_structure">test_build_p_combs_structure() (PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_build_removable_edges_matrix">test_build_removable_edges_matrix() (PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_build_saplepath_no_prior_net_structure">test_build_saplepath_no_prior_net_structure() (PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.utility.html#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_build_sorter">test_build_sorter() (PyCTBN.tests.utility.test_json_importer.TestJsonImporter method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_build_structure">test_build_structure() (PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_build_structure_bad_sorter">test_build_structure_bad_sorter() (PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_build_time_columns_filtering_structure_for_a_node">test_build_time_columns_filtering_structure_for_a_node() (PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_build_time_scalar_indexing_structure_for_a_node">test_build_time_scalar_indexing_structure_for_a_node() (PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_build_trajectories">test_build_trajectories() (PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_build_transition_columns_filtering_structure">test_build_transition_columns_filtering_structure() (PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph method)</a>
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</li>
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<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_build_transition_scalar_indexing_structure_for_a_node">test_build_transition_scalar_indexing_structure_for_a_node() (PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph method)</a>
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</li>
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<li><a href="PyCTBN.tests.utility.html#PyCTBN.tests.utility.test_cache.TestCache.test_clear">test_clear() (PyCTBN.tests.utility.test_cache.TestCache method)</a>
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</li>
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<li><a href="PyCTBN.tests.utility.html#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_clear_concatenated_frame">test_clear_concatenated_frame() (PyCTBN.tests.utility.test_json_importer.TestJsonImporter method)</a>
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</li>
|
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<li><a href="PyCTBN.tests.utility.html#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_clear_data_frame_list">test_clear_data_frame_list() (PyCTBN.tests.utility.test_json_importer.TestJsonImporter method)</a>
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</li>
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<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix.test_compute_cim_coefficients">test_compute_cim_coefficients() (PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix method)</a>
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</li>
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<li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.test_compute_parameters_for_node">test_compute_parameters_for_node() (PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior method)</a>
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</li>
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<li><a href="PyCTBN.tests.utility.html#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_compute_row_delta_in_all_frames">test_compute_row_delta_in_all_frames() (PyCTBN.tests.utility.test_json_importer.TestJsonImporter method)</a>
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</li>
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<li><a href="PyCTBN.tests.utility.html#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_compute_row_delta_in_all_frames_not_init_sorter">test_compute_row_delta_in_all_frames_not_init_sorter() (PyCTBN.tests.utility.test_json_importer.TestJsonImporter method)</a>
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</li>
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<li><a href="PyCTBN.tests.utility.html#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_compute_row_delta_single_samples_frame">test_compute_row_delta_single_samples_frame() (PyCTBN.tests.utility.test_json_importer.TestJsonImporter method)</a>
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</li>
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<li><a href="PyCTBN.tests.utility.html#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_dataset_id">test_dataset_id() (PyCTBN.tests.utility.test_json_importer.TestJsonImporter method)</a>
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</li>
|
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<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_structure.TestStructure.test_edges_operations">test_edges_operations() (PyCTBN.tests.structure_graph.test_structure.TestStructure method)</a>
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</li>
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<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_structure.TestStructure.test_equality">test_equality() (PyCTBN.tests.structure_graph.test_structure.TestStructure method)</a>
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</li>
|
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<li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.test_fast_init">test_fast_init() (PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior method)</a>
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<ul>
|
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<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_fast_init">(PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph method)</a>
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</li>
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</ul></li>
|
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<li><a href="PyCTBN.tests.utility.html#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_file_path">test_file_path() (PyCTBN.tests.utility.test_json_importer.TestJsonImporter method)</a>
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</li>
|
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<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.test_filter_cims_with_mask">test_filter_cims_with_mask() (PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims method)</a>
|
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</li>
|
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<li><a href="PyCTBN.tests.utility.html#PyCTBN.tests.utility.test_cache.TestCache.test_find">test_find() (PyCTBN.tests.utility.test_cache.TestCache method)</a>
|
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</li>
|
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<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_networkgenerator.TestNetworkGenerator.test_generate_cims">test_generate_cims() (PyCTBN.tests.structure_graph.test_networkgenerator.TestNetworkGenerator method)</a>
|
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</li>
|
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<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_networkgenerator.TestNetworkGenerator.test_generate_graph">test_generate_graph() (PyCTBN.tests.structure_graph.test_networkgenerator.TestNetworkGenerator method)</a>
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</li>
|
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<li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_generate_possible_sub_sets_of_size">test_generate_possible_sub_sets_of_size() (PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator method)</a>
|
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</li>
|
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<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_trajectorygenerator.TestTrajectoryGenerator.test_generated_trajectory">test_generated_trajectory() (PyCTBN.tests.structure_graph.test_trajectorygenerator.TestTrajectoryGenerator method)</a>
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</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_trajectorygenerator.TestTrajectoryGenerator.test_generated_trajectory_max_tr">test_generated_trajectory_max_tr() (PyCTBN.tests.structure_graph.test_trajectorygenerator.TestTrajectoryGenerator method)</a>
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|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_structure.TestStructure.test_get_node_id">test_get_node_id() (PyCTBN.tests.structure_graph.test_structure.TestStructure method)</a>
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</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_get_node_indx">test_get_node_indx() (PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph method)</a>
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<ul>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_structure.TestStructure.test_get_node_indx">(PyCTBN.tests.structure_graph.test_structure.TestStructure method)</a>
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</li>
|
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</ul></li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_get_ordered_by_indx_set_of_parents">test_get_ordered_by_indx_set_of_parents() (PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph method)</a>
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|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_get_parents_by_id">test_get_parents_by_id() (PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph method)</a>
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|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_structure.TestStructure.test_get_positional_node_indx">test_get_positional_node_indx() (PyCTBN.tests.structure_graph.test_structure.TestStructure method)</a>
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|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_get_states_number">test_get_states_number() (PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph method)</a>
|
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<ul>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_structure.TestStructure.test_get_states_number">(PyCTBN.tests.structure_graph.test_structure.TestStructure method)</a>
|
|
</li>
|
|
</ul></li>
|
|
<li><a href="PyCTBN.tests.utility.html#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_import_data">test_import_data() (PyCTBN.tests.utility.test_json_importer.TestJsonImporter method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.utility.html#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_import_sampled_cims">test_import_sampled_cims() (PyCTBN.tests.utility.test_json_importer.TestJsonImporter method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.utility.html#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_import_structure">test_import_structure() (PyCTBN.tests.utility.test_json_importer.TestJsonImporter method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.utility.html#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_import_variables">test_import_variables() (PyCTBN.tests.utility.test_json_importer.TestJsonImporter method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_init">test_init() (PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator method)</a>
|
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|
|
<ul>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix.test_init">(PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph.test_init">(PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_init">(PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims.test_init">(PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_structure.TestStructure.test_init">(PyCTBN.tests.structure_graph.test_structure.TestStructure method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_trajectory.TestTrajectory.test_init">(PyCTBN.tests.structure_graph.test_trajectory.TestTrajectory method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_trajectorygenerator.TestTrajectoryGenerator.test_init">(PyCTBN.tests.structure_graph.test_trajectorygenerator.TestTrajectoryGenerator method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.utility.html#PyCTBN.tests.utility.test_cache.TestCache.test_init">(PyCTBN.tests.utility.test_cache.TestCache method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.utility.html#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_init">(PyCTBN.tests.utility.test_json_importer.TestJsonImporter method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.utility.html#PyCTBN.tests.utility.test_sample_importer.TestSampleImporter.test_init">(PyCTBN.tests.utility.test_sample_importer.TestSampleImporter method)</a>
|
|
</li>
|
|
</ul></li>
|
|
</ul></td>
|
|
<td style="width: 33%; vertical-align: top;"><ul>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_init_not_filled_dataframse">test_init_not_filled_dataframse() (PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath.test_init_not_initialized_importer">test_init_not_initialized_importer() (PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_trajectorygenerator.TestTrajectoryGenerator.test_multi_trajectory">test_multi_trajectory() (PyCTBN.tests.structure_graph.test_trajectorygenerator.TestTrajectoryGenerator method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.utility.html#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_normalize_trajectories">test_normalize_trajectories() (PyCTBN.tests.utility.test_json_importer.TestJsonImporter method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.utility.html#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_normalize_trajectories_wrong_indx">test_normalize_trajectories_wrong_indx() (PyCTBN.tests.utility.test_json_importer.TestJsonImporter method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.utility.html#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_normalize_trajectories_wrong_key">test_normalize_trajectories_wrong_key() (PyCTBN.tests.utility.test_json_importer.TestJsonImporter method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.utility.html#PyCTBN.tests.utility.test_sample_importer.TestSampleImporter.test_order">test_order() (PyCTBN.tests.utility.test_sample_importer.TestSampleImporter method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.utility.html#PyCTBN.tests.utility.test_cache.TestCache.test_put">test_put() (PyCTBN.tests.utility.test_cache.TestCache method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.utility.html#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_read_json_file_found">test_read_json_file_found() (PyCTBN.tests.utility.test_json_importer.TestJsonImporter method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.utility.html#PyCTBN.tests.utility.test_json_importer.TestJsonImporter.test_read_json_file_not_found">test_read_json_file_not_found() (PyCTBN.tests.utility.test_json_importer.TestJsonImporter method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix.test_repr">test_repr() (PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix method)</a>
|
|
|
|
<ul>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_structure.TestStructure.test_repr">(PyCTBN.tests.structure_graph.test_structure.TestStructure method)</a>
|
|
</li>
|
|
</ul></li>
|
|
<li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_save_plot_estimated_graph">test_save_plot_estimated_graph() (PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_save_results">test_save_results() (PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.optimizers.html#PyCTBN.tests.optimizers.test_hill_climbing_search.TestHillClimbingSearch.test_structure">test_structure() (PyCTBN.tests.optimizers.test_hill_climbing_search.TestHillClimbingSearch method)</a>
|
|
|
|
<ul>
|
|
<li><a href="PyCTBN.tests.optimizers.html#PyCTBN.tests.optimizers.test_tabu_search.TestTabuSearch.test_structure">(PyCTBN.tests.optimizers.test_tabu_search.TestTabuSearch method)</a>
|
|
</li>
|
|
</ul></li>
|
|
<li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_structure_constraint_based_estimator.TestStructureConstraintBasedEstimator.test_structure_1">test_structure_1() (PyCTBN.tests.estimators.test_structure_constraint_based_estimator.TestStructureConstraintBasedEstimator method)</a>
|
|
|
|
<ul>
|
|
<li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator.test_structure_1">(PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator method)</a>
|
|
</li>
|
|
</ul></li>
|
|
<li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_structure_constraint_based_estimator.TestStructureConstraintBasedEstimator.test_structure_2">test_structure_2() (PyCTBN.tests.estimators.test_structure_constraint_based_estimator.TestStructureConstraintBasedEstimator method)</a>
|
|
|
|
<ul>
|
|
<li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator.test_structure_2">(PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator method)</a>
|
|
</li>
|
|
</ul></li>
|
|
<li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_structure_constraint_based_estimator.TestStructureConstraintBasedEstimator.test_structure_3">test_structure_3() (PyCTBN.tests.estimators.test_structure_constraint_based_estimator.TestStructureConstraintBasedEstimator method)</a>
|
|
|
|
<ul>
|
|
<li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator.test_structure_3">(PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.optimizers.html#PyCTBN.tests.optimizers.test_hill_climbing_search.TestHillClimbingSearch.test_structure_3">(PyCTBN.tests.optimizers.test_hill_climbing_search.TestHillClimbingSearch method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.optimizers.html#PyCTBN.tests.optimizers.test_tabu_search.TestTabuSearch.test_structure_3">(PyCTBN.tests.optimizers.test_tabu_search.TestTabuSearch method)</a>
|
|
</li>
|
|
</ul></li>
|
|
<li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator.test_structure_monoprocesso">test_structure_monoprocesso() (PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_time">test_time() (PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator method)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.utility.html#PyCTBN.tests.utility.test_cache.TestCache">TestCache (class in PyCTBN.tests.utility.test_cache)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix">TestConditionalIntensityMatrix (class in PyCTBN.tests.structure_graph.test_cim)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.optimizers.html#PyCTBN.tests.optimizers.test_hill_climbing_search.TestHillClimbingSearch">TestHillClimbingSearch (class in PyCTBN.tests.optimizers.test_hill_climbing_search)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.utility.html#PyCTBN.tests.utility.test_json_importer.TestJsonImporter">TestJsonImporter (class in PyCTBN.tests.utility.test_json_importer)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_networkgenerator.TestNetworkGenerator">TestNetworkGenerator (class in PyCTBN.tests.structure_graph.test_networkgenerator)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph">TestNetworkGraph (class in PyCTBN.tests.structure_graph.test_networkgraph)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior">TestParametersEstimatior (class in PyCTBN.tests.estimators.test_parameters_estimator)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.utility.html#PyCTBN.tests.utility.test_sample_importer.TestSampleImporter">TestSampleImporter (class in PyCTBN.tests.utility.test_sample_importer)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath">TestSamplePath (class in PyCTBN.tests.structure_graph.test_sample_path)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims">TestSetOfCims (class in PyCTBN.tests.structure_graph.test_setofcims)</a>
|
|
</li>
|
|
<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_structure.TestStructure">TestStructure (class in PyCTBN.tests.structure_graph.test_structure)</a>
|
|
</li>
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<li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_structure_constraint_based_estimator.TestStructureConstraintBasedEstimator">TestStructureConstraintBasedEstimator (class in PyCTBN.tests.estimators.test_structure_constraint_based_estimator)</a>
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</li>
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<li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator">TestStructureEstimator (class in PyCTBN.tests.estimators.test_structure_estimator)</a>
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</li>
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<li><a href="PyCTBN.tests.estimators.html#PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator">TestStructureScoreBasedEstimator (class in PyCTBN.tests.estimators.test_structure_score_based_estimator)</a>
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</li>
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<li><a href="PyCTBN.tests.optimizers.html#PyCTBN.tests.optimizers.test_tabu_search.TestTabuSearch">TestTabuSearch (class in PyCTBN.tests.optimizers.test_tabu_search)</a>
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</li>
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<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_trajectory.TestTrajectory">TestTrajectory (class in PyCTBN.tests.structure_graph.test_trajectory)</a>
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</li>
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<li><a href="PyCTBN.tests.structure_graph.html#PyCTBN.tests.structure_graph.test_trajectorygenerator.TestTrajectoryGenerator">TestTrajectoryGenerator (class in PyCTBN.tests.structure_graph.test_trajectorygenerator)</a>
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</li>
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<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.network_graph.NetworkGraph.time_filtering">time_filtering() (pyctbn.legacy.structure_graph.network_graph.NetworkGraph property)</a>
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</li>
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<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.network_graph.NetworkGraph.time_scalar_indexing_strucure">time_scalar_indexing_strucure() (pyctbn.legacy.structure_graph.network_graph.NetworkGraph property)</a>
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</li>
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|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.trajectory.Trajectory.times">times() (pyctbn.legacy.structure_graph.trajectory.Trajectory property)</a>
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</li>
|
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<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.sample_path.SamplePath.total_variables_count">total_variables_count() (pyctbn.legacy.structure_graph.sample_path.SamplePath property)</a>
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</li>
|
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<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.structure.Structure.total_variables_number">total_variables_number() (pyctbn.legacy.structure_graph.structure.Structure property)</a>
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</li>
|
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<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.sample_path.SamplePath.trajectories">trajectories() (pyctbn.legacy.structure_graph.sample_path.SamplePath property)</a>
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|
</li>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.trajectory.Trajectory">Trajectory (class in pyctbn.legacy.structure_graph.trajectory)</a>
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|
</li>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.trajectory.Trajectory.trajectory">trajectory() (pyctbn.legacy.structure_graph.trajectory.Trajectory property)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.trajectory_generator.TrajectoryGenerator">TrajectoryGenerator (class in pyctbn.legacy.structure_graph.trajectory_generator)</a>
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|
</li>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.network_graph.NetworkGraph.transition_filtering">transition_filtering() (pyctbn.legacy.structure_graph.network_graph.NetworkGraph property)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.network_graph.NetworkGraph.transition_scalar_indexing_structure">transition_scalar_indexing_structure() (pyctbn.legacy.structure_graph.network_graph.NetworkGraph property)</a>
|
|
</li>
|
|
</ul></td>
|
|
</tr></table>
|
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|
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<h2 id="V">V</h2>
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|
<table style="width: 100%" class="indextable genindextable"><tr>
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|
<td style="width: 33%; vertical-align: top;"><ul>
|
|
<li><a href="pyctbn.legacy.estimators.html#pyctbn.legacy.estimators.fam_score_calculator.FamScoreCalculator.variable_cim_xu_marginal_likelihood_q">variable_cim_xu_marginal_likelihood_q() (pyctbn.legacy.estimators.fam_score_calculator.FamScoreCalculator method)</a>
|
|
</li>
|
|
<li><a href="pyctbn.legacy.estimators.html#pyctbn.legacy.estimators.fam_score_calculator.FamScoreCalculator.variable_cim_xu_marginal_likelihood_theta">variable_cim_xu_marginal_likelihood_theta() (pyctbn.legacy.estimators.fam_score_calculator.FamScoreCalculator method)</a>
|
|
</li>
|
|
</ul></td>
|
|
<td style="width: 33%; vertical-align: top;"><ul>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.network_generator.NetworkGenerator.variables">variables() (pyctbn.legacy.structure_graph.network_generator.NetworkGenerator property)</a>
|
|
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<ul>
|
|
<li><a href="pyctbn.legacy.utility.html#pyctbn.legacy.utility.abstract_importer.AbstractImporter.variables">(pyctbn.legacy.utility.abstract_importer.AbstractImporter property)</a>
|
|
</li>
|
|
</ul></li>
|
|
</ul></td>
|
|
</tr></table>
|
|
|
|
<h2 id="W">W</h2>
|
|
<table style="width: 100%" class="indextable genindextable"><tr>
|
|
<td style="width: 33%; vertical-align: top;"><ul>
|
|
<li><a href="pyctbn.legacy.structure_graph.html#pyctbn.legacy.structure_graph.trajectory_generator.TrajectoryGenerator.worker">worker() (pyctbn.legacy.structure_graph.trajectory_generator.TrajectoryGenerator method)</a>
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|
</li>
|
|
</ul></td>
|
|
</tr></table>
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|
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