1
0
Fork 0
Old engine for Continuous Time Bayesian Networks. Superseded by reCTBN. 🐍 https://github.com/madlabunimib/PyCTBN
You can not select more than 25 topics Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
This repo is archived. You can view files and clone it, but cannot push or open issues/pull-requests.
PyCTBN/sphinx_output/_build/html/searchindex.js

1 lines
12 KiB

Search.setIndex({docnames:["classes","examples","index","modules"],envversion:{"sphinx.domains.c":2,"sphinx.domains.changeset":1,"sphinx.domains.citation":1,"sphinx.domains.cpp":3,"sphinx.domains.index":1,"sphinx.domains.javascript":2,"sphinx.domains.math":2,"sphinx.domains.python":2,"sphinx.domains.rst":2,"sphinx.domains.std":1,sphinx:56},filenames:["classes.rst","examples.rst","index.rst","modules.rst"],objects:{"":{classes:[0,0,0,"-"]},"classes.abstract_importer":{AbstractImporter:[0,1,1,""]},"classes.abstract_importer.AbstractImporter":{build_list_of_samples_array:[0,2,1,""],build_sorter:[0,2,1,""],clear_concatenated_frame:[0,2,1,""],compute_row_delta_in_all_samples_frames:[0,2,1,""],compute_row_delta_sigle_samples_frame:[0,2,1,""],concatenated_samples:[0,2,1,""],dataset_id:[0,2,1,""],file_path:[0,2,1,""],sorter:[0,2,1,""],structure:[0,2,1,""],variables:[0,2,1,""]},"classes.cache":{Cache:[0,1,1,""]},"classes.cache.Cache":{clear:[0,2,1,""],find:[0,2,1,""],put:[0,2,1,""]},"classes.conditional_intensity_matrix":{ConditionalIntensityMatrix:[0,1,1,""]},"classes.conditional_intensity_matrix.ConditionalIntensityMatrix":{cim:[0,2,1,""],compute_cim_coefficients:[0,2,1,""],state_residence_times:[0,2,1,""],state_transition_matrix:[0,2,1,""]},"classes.json_importer":{JsonImporter:[0,1,1,""]},"classes.json_importer.JsonImporter":{build_sorter:[0,2,1,""],clear_data_frame_list:[0,2,1,""],dataset_id:[0,2,1,""],import_data:[0,2,1,""],import_sampled_cims:[0,2,1,""],import_structure:[0,2,1,""],import_trajectories:[0,2,1,""],import_variables:[0,2,1,""],normalize_trajectories:[0,2,1,""],one_level_normalizing:[0,2,1,""],read_json_file:[0,2,1,""]},"classes.network_graph":{NetworkGraph:[0,1,1,""]},"classes.network_graph.NetworkGraph":{add_edges:[0,2,1,""],add_nodes:[0,2,1,""],build_p_comb_structure_for_a_node:[0,2,1,""],build_time_columns_filtering_for_a_node:[0,2,1,""],build_time_scalar_indexing_structure_for_a_node:[0,2,1,""],build_transition_filtering_for_a_node:[0,2,1,""],build_transition_scalar_indexing_structure_for_a_node:[0,2,1,""],clear_indexing_filtering_structures:[0,2,1,""],edges:[0,2,1,""],fast_init:[0,2,1,""],get_node_indx:[0,2,1,""],get_ordered_by_indx_set_of_parents:[0,2,1,""],get_parents_by_id:[0,2,1,""],get_positional_node_indx:[0,2,1,""],get_states_number:[0,2,1,""],nodes:[0,2,1,""],nodes_indexes:[0,2,1,""],nodes_values:[0,2,1,""],p_combs:[0,2,1,""],remove_node:[0,2,1,""],time_filtering:[0,2,1,""],time_scalar_indexing_strucure:[0,2,1,""],transition_filtering:[0,2,1,""],transition_scalar_indexing_structure:[0,2,1,""]},"classes.parameters_estimator":{ParametersEstimator:[0,1,1,""]},"classes.parameters_estimator.ParametersEstimator":{compute_parameters_for_node:[0,2,1,""],compute_state_res_time_for_node:[0,2,1,""],compute_state_transitions_for_a_node:[0,2,1,""],fast_init:[0,2,1,""]},"classes.sample_path":{SamplePath:[0,1,1,""]},"classes.sample_path.SamplePath":{build_structure:[0,2,1,""],build_trajectories:[0,2,1,""],has_prior_net_structure:[0,2,1,""],structure:[0,2,1,""],total_variables_count:[0,2,1,""],trajectories:[0,2,1,""]},"classes.set_of_cims":{SetOfCims:[0,1,1,""]},"classes.set_of_cims.SetOfCims":{actual_cims:[0,2,1,""],build_cims:[0,2,1,""],build_times_and_transitions_structures:[0,2,1,""],filter_cims_with_mask:[0,2,1,""],get_cims_number:[0,2,1,""],p_combs:[0,2,1,""]},"classes.structure":{Structure:[0,1,1,""]},"classes.structure.Structure":{edges:[0,2,1,""],get_node_id:[0,2,1,""],get_node_indx:[0,2,1,""],get_positional_node_indx:[0,2,1,""],get_states_number:[0,2,1,""],nodes_indexes:[0,2,1,""],nodes_labels:[0,2,1,""],nodes_values:[0,2,1,""],remove_node:[0,2,1,""],total_variables_number:[0,2,1,""]},"classes.structure_estimator":{StructureEstimator:[0,1,1,""]},"classes.structure_estimator.StructureEstimator":{adjacency_matrix:[0,2,1,""],build_complete_graph:[0,2,1,""],complete_test:[0,2,1,""],ctpc_algorithm:[0,2,1,""],generate_possible_sub_sets_of_size:[0,2,1,""],independence_test:[0,2,1,""],one_iteration_of_CTPC_algorithm:[0,2,1,""],save_plot_estimated_structure_graph:[0,2,1,""],save_results:[0,2,1,""],spurious_edges:[0,2,1,""]},"classes.trajectory":{Trajectory:[0,1,1,""]},"classes.trajectory.Trajectory":{complete_trajectory:[0,2,1,""],size:[0,2,1,""],times:[0,2,1,""],trajectory:[0,2,1,""]},classes:{abstract_importer:[0,0,0,"-"],cache:[0,0,0,"-"],conditional_intensity_matrix:[0,0,0,"-"],json_importer:[0,0,0,"-"],network_graph:[0,0,0,"-"],parameters_estimator:[0,0,0,"-"],sample_path:[0,0,0,"-"],set_of_cims:[0,0,0,"-"],structure:[0,0,0,"-"],structure_estimator:[0,0,0,"-"],trajectory:[0,0,0,"-"]}},objnames:{"0":["py","module","Python module"],"1":["py","class","Python class"],"2":["py","method","Python method"]},objtypes:{"0":"py:module","1":"py:class","2":"py:method"},terms:{"abstract":[0,1],"boolean":0,"class":[1,2],"float":0,"import":[0,2],"int":0,"null":0,"return":[0,1],"static":0,"super":1,"true":[0,1],"var":1,HAS:0,Has:0,NOT:0,The:[0,1],Use:1,__init__:1,_actual_cach:0,_actual_cim:0,_actual_trajectori:0,_aggregated_info_about_nodes_par:0,_array_indx:0,_cach:0,_cim:0,_complete_graph:0,_df_samples_list:[0,1],_df_structur:0,_df_variabl:[0,1],_file_path:1,_graph:[0,1],_import:0,_list_of_sets_of_par:0,_net_graph:0,_node:0,_node_id:0,_nodes_indx:0,_nodes_v:0,_p_combs_structur:0,_raw_data:0,_sample_path:0,_single_set_of_cim:0,_sorter:[0,1],_state_residence_tim:0,_structur:0,_structure_label:0,_time:0,_time_filt:0,_time_scalar_indexing_structur:0,_total_variables_count:0,_total_variables_numb:0,_trajectori:0,_transition_filt:0,_transition_matric:0,_transition_scalar_indexing_structur:0,_variables_label:0,abc:0,about:0,abstract_import:[2,3],abstractimport:[0,1],act:0,actual:0,actual_cim:[0,1],add:0,add_edg:0,add_nod:0,added:0,addit:0,adjac:[0,1],adjacency_matrix:[0,1],after:0,aggreg:0,algorithm:[0,1],all:[0,1],alreadi:[0,1],also:0,anoth:0,append:0,arc:0,arrai:[0,1],axi:1,base:0,belong:0,between:0,bool:0,both:0,bound:0,build:[0,1],build_cim:0,build_complete_graph:0,build_list_of_samples_arrai:0,build_p_comb_structure_for_a_nod:0,build_sort:[0,1],build_structur:[0,1],build_time_columns_filtering_for_a_nod:0,build_time_scalar_indexing_structure_for_a_nod:0,build_times_and_transitions_structur:0,build_trajectori:[0,1],build_transition_filtering_for_a_nod:0,build_transition_scalar_indexing_structure_for_a_nod:0,built:0,cach:[2,3],call:[0,1],cardin:0,cardinalit:0,caridin:0,caridinalit:0,chang:0,chi:0,chi_test:0,chi_test_alfa:0,child:0,child_states_numb:0,cim1:0,cim2:0,cim:[0,1],cims_kei:0,clear:0,clear_concatenated_fram:0,clear_data_frame_list:0,clear_indexing_filtering_structur:0,coeffici:0,col:0,color:0,cols_filt:0,column:[0,1],columns_head:0,comb:0,combin:0,combinatori:0,common:0,complet:0,complete_test:0,complete_trajectori:0,comput:[0,1],compute_cim_coeffici:0,compute_parameters_for_nod:[0,1],compute_row_delta_in_all_samples_fram:[0,1],compute_row_delta_sigle_samples_fram:0,compute_state_res_time_for_nod:0,compute_state_transitions_for_a_nod:0,concatanated_sampl:0,concaten:0,concatenated_sampl:0,condit:0,conditional_intensity_matrix:[2,3],conditionalintensitymatrix:0,consid:0,construct:[0,1],conta:0,contain:0,content:[2,3],convert:0,copi:0,core:0,correct:0,count:0,creat:[0,1],csv:1,csvimport:1,ctpc:[0,1],ctpc_algorithm:[0,1],current:0,cut:0,dafram:0,data:[0,2],datafram:[0,1],dataset:0,dataset_id:[0,1],datfram:0,def:1,definit:0,delta:0,demonstr:1,desir:0,df_samples_list:0,dict:[0,1],dictionari:0,differ:0,digraph:0,dimens:0,dir:1,direct:0,doc:0,doubl:0,download:1,drop:1,duplic:0,dyn:1,each:0,edg:[0,1],edges_list:0,end:0,entir:0,equal:0,est:1,estim:[0,2],everi:0,exam:1,exampl:[0,2],exclud:0,exctract:0,exp_test_alfa:0,exponenti:0,expos:0,extend:1,extens:0,extract:0,fals:0,fast_init:[0,1],file:[0,1],file_path:[0,1],filepath:0,fill:[0,1],filter:0,filter_cims_with_mask:0,find:0,first:[0,1],follow:0,form:0,format:1,found:0,frame:0,from:[0,1],from_nod:0,gener:0,generate_possible_sub_sets_of_s:0,get_cims_numb:0,get_node_id:0,get_node_indx:0,get_ordered_by_indx_set_of_par:0,get_parents_by_id:0,get_positional_node_indx:0,get_states_numb:0,given:0,glob:1,graph:[0,1],graph_struct:0,graphic:0,grid:0,grpah:1,has:[0,1],has_prior_net_structur:0,have:0,header:0,hold:0,how:0,hypothesi:0,identifi:0,iff:0,implement:[0,2],import_data:[0,1],import_sampled_cim:0,import_structur:0,import_trajectori:0,import_vari:[0,1],independ:0,independence_test:0,index:[0,1,2],indic:0,indx:0,info:[0,1],inform:0,init:1,initi:[0,1],inplac:1,input:0,insid:1,instal:2,interest:0,intes:0,iter:0,join:1,json:[0,1],json_import:[2,3],jsonarrai:0,jsonimport:[0,1],keep:0,kei:0,label:0,level:0,list:[0,1],list_of_column:0,list_of_edg:0,list_of_nod:0,load:0,loop:0,main:1,mask:0,mask_arr:0,matric:0,matrix:[0,1],member:0,mention:0,merg:0,method:0,model:0,modul:[2,3],multipl:0,name:[0,1],ndarrai:0,necessari:0,nest:0,net:[0,1],net_graph:0,network:0,network_graph:[2,3],networkgraph:[0,1],networkx:0,node:[0,1],node_id:0,node_index:0,node_indx:0,node_st:0,node_states_numb:0,nodes_index:0,nodes_indexes_arr:0,nodes_label:0,nodes_labels_list:0,nodes_numb:0,nodes_vals_arr:0,nodes_valu:[0,1],none:[0,1],normal:0,normalize_trajectori:0,number:0,numpi:0,obj:1,object:[0,1],one:0,one_iteration_of_ctpc_algorithm:0,one_level_norm:0,onli:0,order:0,origin:0,original_cols_numb:0,otherwis:0,out:0,outer:[0,1],over:0,own:2,p_comb:0,p_indx:0,packag:[2,3],page:2,panda:[0,1],param:0,paramet:[0,2],parameters_estim:[2,3],parametersestim:[0,1],parent:0,parent_label:0,parent_set:0,parents_cardin:0,parents_comb:0,parents_index:0,parents_label:0,parents_states_numb:0,parents_v:0,parents_valu:0,particular:0,pass:1,path:[0,1],peest:1,perform:0,pip:1,place:0,plot:0,posit:0,possibl:0,prepar:0,present:0,print:1,prior:[0,1],prior_net_structur:0,process:0,properli:0,properti:0,put:0,pyctbn:1,q_xx:0,raw:0,raw_data:0,read:[0,1],read_csv:1,read_csv_fil:1,read_fil:1,read_json_fil:0,real:[0,1],red:0,refer:0,reject:0,rel:0,relat:0,releas:1,remain:0,remov:0,remove_nod:0,repres:0,represent:0,res:0,resid:0,result:[0,1],results_:0,rtype:0,same:0,sampl:[0,1],sample_fram:[0,1],sample_path:[2,3],samplepath:[0,1],samples_label:0,save:[0,1],save_plot_estimated_structure_graph:0,save_result:[0,1],scalar_index:0,scalar_indexes_struct:0,se1:1,search:2,see:0,select:1,self:[0,1],sep_set:0,set:0,set_of_cim:[2,3],setofcim:[0,1],shift:0,shifted_cols_head:0,signific:0,simbol:0,simpl:1,simpli:1,sinc:0,size:0,socim:0,sofc1:1,sorter:0,specif:1,spuriou:0,spurious_edg:0,start:0,state:0,state_res_tim:0,state_residence_tim:0,state_transition_matrix:0,str:[0,1],string:0,structur:[2,3],structure_estim:[2,3],structure_estimation_exampl:1,structure_label:0,structureestim:[0,1],structut:0,style:0,submodul:[2,3],subset:0,symbol:0,synthet:0,take:1,tar:1,task:0,ternari:1,test:0,test_child:0,test_par:0,tha:0,thi:[0,1],three:1,time:[0,1],time_filt:0,time_kei:0,time_scalar_indexing_strucur:0,timestamp:0,to_nod:0,tot_vars_count:0,total:0,total_variables_count:0,total_variables_numb:0,traj:0,trajectori:[1,2,3],trajectories_kei:0,trajectri:1,transit:0,transition_filt:0,transition_matric:0,transition_scalar_indexing_structur:0,tri:0,tupl:0,tutori:0,two:0,type:[0,1],union:0,uniqu:0,unus:0,usag:2,use:1,used:0,using:0,valu:[0,1],values_list:1,var_id:0,variabl:[0,1],variable_cardin:0,variable_label:0,variables_kei:0,variables_label:0,vector:0,want:1,where:0,which:0,whl:1,without:0,word:0,you:[0,1],your:2},titles:["classes package","Examples","Welcome to PyCTBN\u2019s documentation!","classes"],titleterms:{"class":[0,3],"import":1,abstract_import:0,cach:0,conditional_intensity_matrix:0,content:0,data:1,document:2,estim:1,exampl:1,implement:1,indic:2,instal:1,json_import:0,modul:0,network_graph:0,own:1,packag:0,paramet:1,parameters_estim:0,pyctbn:2,sample_path:0,set_of_cim:0,structur:[0,1],structure_estim:0,submodul:0,tabl:2,trajectori:0,usag:1,welcom:2,your:1}})