Old engine for Continuous Time Bayesian Networks. Superseded by reCTBN. 🐍
https://github.com/madlabunimib/PyCTBN
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170 lines
6.1 KiB
170 lines
6.1 KiB
import os
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import sys
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from os.path import join, dirname
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from distutils.sysconfig import get_python_inc
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import subprocess
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import numpy
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from numpy.distutils.misc_util import get_numpy_include_dirs
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try:
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from numpy.distutils.misc_util import get_info
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except ImportError:
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raise ValueError("numpy >= 1.4 is required (detected %s from %s)" %
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(numpy.__version__, numpy.__file__))
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def configuration(parent_package='',top_path=None):
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from numpy.distutils.misc_util import Configuration
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from scipy._build_utils.system_info import get_info as get_system_info
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config = Configuration('special', parent_package, top_path)
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define_macros = []
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if sys.platform == 'win32':
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# define_macros.append(('NOINFINITIES',None))
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# define_macros.append(('NONANS',None))
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define_macros.append(('_USE_MATH_DEFINES',None))
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curdir = os.path.abspath(os.path.dirname(__file__))
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python_inc_dirs = get_python_inc()
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plat_specific_python_inc_dirs = get_python_inc(plat_specific=1)
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inc_dirs = [get_numpy_include_dirs(), python_inc_dirs]
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if python_inc_dirs != plat_specific_python_inc_dirs:
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inc_dirs.append(plat_specific_python_inc_dirs)
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inc_dirs.append(join(dirname(dirname(__file__)), '_lib'))
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# C libraries
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cephes_src = [join('cephes','*.c')]
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cephes_hdr = [join('cephes', '*.h')]
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config.add_library('sc_cephes',sources=cephes_src,
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include_dirs=[curdir] + inc_dirs,
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depends=(cephes_hdr + ['*.h']),
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macros=define_macros)
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# Fortran/C++ libraries
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mach_src = [join('mach','*.f')]
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amos_src = [join('amos','*.f')]
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cdf_src = [join('cdflib','*.f')]
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specfun_src = [join('specfun','*.f')]
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config.add_library('sc_mach',sources=mach_src,
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config_fc={'noopt':(__file__,1)})
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config.add_library('sc_amos',sources=amos_src)
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config.add_library('sc_cdf',sources=cdf_src)
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config.add_library('sc_specfun',sources=specfun_src)
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# Extension specfun
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config.add_extension('specfun',
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sources=['specfun.pyf'],
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f2py_options=['--no-wrap-functions'],
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depends=specfun_src,
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define_macros=[],
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libraries=['sc_specfun'])
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# Extension _ufuncs
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headers = ['*.h', join('cephes', '*.h')]
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ufuncs_src = ['_ufuncs.c', 'sf_error.c', '_logit.c.src',
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"amos_wrappers.c", "cdf_wrappers.c", "specfun_wrappers.c"]
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ufuncs_dep = (
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headers
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+ ufuncs_src
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+ amos_src
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+ cephes_src
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+ mach_src
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+ cdf_src
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+ specfun_src
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)
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cfg = dict(get_system_info('lapack_opt'))
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cfg.setdefault('include_dirs', []).extend([curdir] + inc_dirs + [numpy.get_include()])
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cfg.setdefault('libraries', []).extend(
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['sc_amos', 'sc_cephes', 'sc_mach', 'sc_cdf', 'sc_specfun']
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)
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cfg.setdefault('define_macros', []).extend(define_macros)
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config.add_extension('_ufuncs',
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depends=ufuncs_dep,
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sources=ufuncs_src,
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extra_info=get_info("npymath"),
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**cfg)
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# Extension _ufuncs_cxx
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ufuncs_cxx_src = ['_ufuncs_cxx.cxx', 'sf_error.c',
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'_faddeeva.cxx', 'Faddeeva.cc',
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'_wright.cxx', 'wright.cc']
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ufuncs_cxx_dep = (headers + ufuncs_cxx_src + cephes_src
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+ ['*.hh'])
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config.add_extension('_ufuncs_cxx',
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sources=ufuncs_cxx_src,
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depends=ufuncs_cxx_dep,
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include_dirs=[curdir] + inc_dirs,
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define_macros=define_macros,
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extra_info=get_info("npymath"))
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cfg = dict(get_system_info('lapack_opt'))
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config.add_extension('_ellip_harm_2',
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sources=['_ellip_harm_2.c', 'sf_error.c',],
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**cfg
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)
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# Cython API
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config.add_data_files('cython_special.pxd')
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cython_special_src = ['cython_special.c', 'sf_error.c', '_logit.c.src',
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"amos_wrappers.c", "cdf_wrappers.c", "specfun_wrappers.c"]
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cython_special_dep = (
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headers
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+ ufuncs_src
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+ ufuncs_cxx_src
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+ amos_src
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+ cephes_src
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+ mach_src
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+ cdf_src
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+ specfun_src
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)
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cfg = dict(get_system_info('lapack_opt'))
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cfg.setdefault('include_dirs', []).extend([curdir] + inc_dirs + [numpy.get_include()])
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cfg.setdefault('libraries', []).extend(
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['sc_amos', 'sc_cephes', 'sc_mach', 'sc_cdf', 'sc_specfun']
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)
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cfg.setdefault('define_macros', []).extend(define_macros)
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config.add_extension('cython_special',
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depends=cython_special_dep,
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sources=cython_special_src,
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extra_info=get_info("npymath"),
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**cfg)
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# combinatorics
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config.add_extension('_comb',
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sources=['_comb.c'])
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# testing for _round.h
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config.add_extension('_test_round',
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sources=['_test_round.c'],
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depends=['_round.h', 'cephes/dd_idefs.h'],
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include_dirs=[numpy.get_include()] + inc_dirs,
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extra_info=get_info('npymath'))
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config.add_data_files('tests/*.py')
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config.add_data_files('tests/data/README')
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# regenerate npz data files
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makenpz = os.path.join(os.path.dirname(__file__),
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'utils', 'makenpz.py')
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data_dir = os.path.join(os.path.dirname(__file__),
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'tests', 'data')
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for name in ['boost', 'gsl', 'local']:
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subprocess.check_call([sys.executable, makenpz,
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'--use-timestamp',
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os.path.join(data_dir, name)])
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config.add_data_files('tests/data/*.npz')
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config.add_subpackage('_precompute')
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# Type stubs
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config.add_data_files('*.pyi')
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return config
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if __name__ == '__main__':
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from numpy.distutils.core import setup
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setup(**configuration(top_path='').todict())
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