Old engine for Continuous Time Bayesian Networks. Superseded by reCTBN. 🐍
https://github.com/madlabunimib/PyCTBN
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123 lines
4.7 KiB
123 lines
4.7 KiB
from os.path import join
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def configuration(parent_package='', top_path=None):
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from distutils.sysconfig import get_python_inc
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from scipy._build_utils.system_info import get_info, numpy_info
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from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
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from scipy._build_utils import get_g77_abi_wrappers, gfortran_legacy_flag_hook
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config = Configuration('linalg', parent_package, top_path)
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lapack_opt = get_info('lapack_opt')
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atlas_version = ([v[3:-3] for k, v in lapack_opt.get('define_macros', [])
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if k == 'ATLAS_INFO']+[None])[0]
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if atlas_version:
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print(('ATLAS version: %s' % atlas_version))
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# fblas:
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sources = ['fblas.pyf.src']
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sources += get_g77_abi_wrappers(lapack_opt)
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config.add_extension('_fblas',
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sources=sources,
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depends=['fblas_l?.pyf.src'],
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extra_info=lapack_opt
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)
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# flapack:
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sources = ['flapack.pyf.src']
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sources += get_g77_abi_wrappers(lapack_opt)
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dep_pfx = join('src', 'lapack_deprecations')
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deprecated_lapack_routines = [join(dep_pfx, c + 'gegv.f') for c in 'cdsz']
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sources += deprecated_lapack_routines
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config.add_extension('_flapack',
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sources=sources,
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depends=['flapack_gen.pyf.src',
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'flapack_gen_banded.pyf.src',
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'flapack_gen_tri.pyf.src',
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'flapack_pos_def.pyf.src',
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'flapack_pos_def_tri.pyf.src',
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'flapack_sym_herm.pyf.src',
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'flapack_other.pyf.src',
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'flapack_user.pyf.src'],
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extra_info=lapack_opt
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)
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if atlas_version is not None:
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# cblas:
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config.add_extension('_cblas',
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sources=['cblas.pyf.src'],
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depends=['cblas.pyf.src', 'cblas_l1.pyf.src'],
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extra_info=lapack_opt
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)
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# clapack:
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config.add_extension('_clapack',
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sources=['clapack.pyf.src'],
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depends=['clapack.pyf.src'],
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extra_info=lapack_opt
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)
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# _flinalg:
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config.add_extension('_flinalg',
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sources=[join('src', 'det.f'), join('src', 'lu.f')],
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extra_info=lapack_opt
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)
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# _interpolative:
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ext = config.add_extension('_interpolative',
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sources=[join('src', 'id_dist', 'src', '*.f'),
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"interpolative.pyf"],
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extra_info=lapack_opt
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)
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ext._pre_build_hook = gfortran_legacy_flag_hook
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# _solve_toeplitz:
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config.add_extension('_solve_toeplitz',
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sources=[('_solve_toeplitz.c')],
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include_dirs=[get_numpy_include_dirs()])
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config.add_data_dir('tests')
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# Cython BLAS/LAPACK
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config.add_data_files('cython_blas.pxd')
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config.add_data_files('cython_lapack.pxd')
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sources = ['_blas_subroutine_wrappers.f', '_lapack_subroutine_wrappers.f']
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sources += get_g77_abi_wrappers(lapack_opt)
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includes = numpy_info().get_include_dirs() + [get_python_inc()]
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config.add_library('fwrappers', sources=sources, include_dirs=includes)
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config.add_extension('cython_blas',
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sources=['cython_blas.c'],
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depends=['cython_blas.pyx', 'cython_blas.pxd',
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'fortran_defs.h', '_blas_subroutines.h'],
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include_dirs=['.'],
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libraries=['fwrappers'],
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extra_info=lapack_opt)
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config.add_extension('cython_lapack',
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sources=['cython_lapack.c'],
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depends=['cython_lapack.pyx', 'cython_lapack.pxd',
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'fortran_defs.h', '_lapack_subroutines.h'],
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include_dirs=['.'],
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libraries=['fwrappers'],
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extra_info=lapack_opt)
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config.add_extension('_decomp_update',
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sources=['_decomp_update.c'])
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# Add any license files
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config.add_data_files('src/id_dist/doc/doc.tex')
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config.add_data_files('src/lapack_deprecations/LICENSE')
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return config
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if __name__ == '__main__':
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from numpy.distutils.core import setup
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setup(**configuration(top_path='').todict())
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