Old engine for Continuous Time Bayesian Networks. Superseded by reCTBN. 🐍
https://github.com/madlabunimib/PyCTBN
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166 lines
5.1 KiB
166 lines
5.1 KiB
import numpy as np
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import pytest
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from pandas.errors import NumbaUtilError
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import pandas.util._test_decorators as td
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from pandas import DataFrame, Index, MultiIndex, Series, Timestamp, date_range
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import pandas._testing as tm
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@pytest.mark.parametrize("bad_raw", [None, 1, 0])
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def test_rolling_apply_invalid_raw(bad_raw):
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with pytest.raises(ValueError, match="raw parameter must be `True` or `False`"):
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Series(range(3)).rolling(1).apply(len, raw=bad_raw)
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def test_rolling_apply_out_of_bounds(engine_and_raw):
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# gh-1850
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engine, raw = engine_and_raw
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vals = Series([1, 2, 3, 4])
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result = vals.rolling(10).apply(np.sum, engine=engine, raw=raw)
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assert result.isna().all()
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result = vals.rolling(10, min_periods=1).apply(np.sum, engine=engine, raw=raw)
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expected = Series([1, 3, 6, 10], dtype=float)
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tm.assert_almost_equal(result, expected)
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@pytest.mark.parametrize("window", [2, "2s"])
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def test_rolling_apply_with_pandas_objects(window):
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# 5071
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df = DataFrame(
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{"A": np.random.randn(5), "B": np.random.randint(0, 10, size=5)},
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index=date_range("20130101", periods=5, freq="s"),
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)
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# we have an equal spaced timeseries index
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# so simulate removing the first period
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def f(x):
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if x.index[0] == df.index[0]:
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return np.nan
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return x.iloc[-1]
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result = df.rolling(window).apply(f, raw=False)
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expected = df.iloc[2:].reindex_like(df)
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tm.assert_frame_equal(result, expected)
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with pytest.raises(AttributeError):
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df.rolling(window).apply(f, raw=True)
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def test_rolling_apply(engine_and_raw):
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engine, raw = engine_and_raw
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expected = Series([], dtype="float64")
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result = expected.rolling(10).apply(lambda x: x.mean(), engine=engine, raw=raw)
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tm.assert_series_equal(result, expected)
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# gh-8080
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s = Series([None, None, None])
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result = s.rolling(2, min_periods=0).apply(lambda x: len(x), engine=engine, raw=raw)
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expected = Series([1.0, 2.0, 2.0])
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tm.assert_series_equal(result, expected)
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result = s.rolling(2, min_periods=0).apply(len, engine=engine, raw=raw)
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tm.assert_series_equal(result, expected)
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def test_all_apply(engine_and_raw):
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engine, raw = engine_and_raw
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df = (
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DataFrame(
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{"A": date_range("20130101", periods=5, freq="s"), "B": range(5)}
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).set_index("A")
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* 2
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)
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er = df.rolling(window=1)
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r = df.rolling(window="1s")
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result = r.apply(lambda x: 1, engine=engine, raw=raw)
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expected = er.apply(lambda x: 1, engine=engine, raw=raw)
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tm.assert_frame_equal(result, expected)
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def test_ragged_apply(engine_and_raw):
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engine, raw = engine_and_raw
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df = DataFrame({"B": range(5)})
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df.index = [
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Timestamp("20130101 09:00:00"),
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Timestamp("20130101 09:00:02"),
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Timestamp("20130101 09:00:03"),
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Timestamp("20130101 09:00:05"),
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Timestamp("20130101 09:00:06"),
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]
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f = lambda x: 1
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result = df.rolling(window="1s", min_periods=1).apply(f, engine=engine, raw=raw)
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expected = df.copy()
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expected["B"] = 1.0
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tm.assert_frame_equal(result, expected)
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result = df.rolling(window="2s", min_periods=1).apply(f, engine=engine, raw=raw)
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expected = df.copy()
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expected["B"] = 1.0
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tm.assert_frame_equal(result, expected)
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result = df.rolling(window="5s", min_periods=1).apply(f, engine=engine, raw=raw)
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expected = df.copy()
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expected["B"] = 1.0
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tm.assert_frame_equal(result, expected)
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def test_invalid_engine():
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with pytest.raises(ValueError, match="engine must be either 'numba' or 'cython'"):
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Series(range(1)).rolling(1).apply(lambda x: x, engine="foo")
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def test_invalid_engine_kwargs_cython():
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with pytest.raises(ValueError, match="cython engine does not accept engine_kwargs"):
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Series(range(1)).rolling(1).apply(
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lambda x: x, engine="cython", engine_kwargs={"nopython": False}
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)
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def test_invalid_raw_numba():
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with pytest.raises(
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ValueError, match="raw must be `True` when using the numba engine"
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):
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Series(range(1)).rolling(1).apply(lambda x: x, raw=False, engine="numba")
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@td.skip_if_no("numba")
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def test_invalid_kwargs_nopython():
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with pytest.raises(NumbaUtilError, match="numba does not support kwargs with"):
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Series(range(1)).rolling(1).apply(
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lambda x: x, kwargs={"a": 1}, engine="numba", raw=True
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)
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@pytest.mark.parametrize("args_kwargs", [[None, {"par": 10}], [(10,), None]])
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def test_rolling_apply_args_kwargs(args_kwargs):
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# GH 33433
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def foo(x, par):
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return np.sum(x + par)
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df = DataFrame({"gr": [1, 1], "a": [1, 2]})
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idx = Index(["gr", "a"])
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expected = DataFrame([[11.0, 11.0], [11.0, 12.0]], columns=idx)
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result = df.rolling(1).apply(foo, args=args_kwargs[0], kwargs=args_kwargs[1])
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tm.assert_frame_equal(result, expected)
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result = df.rolling(1).apply(foo, args=(10,))
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midx = MultiIndex.from_tuples([(1, 0), (1, 1)], names=["gr", None])
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expected = Series([11.0, 12.0], index=midx, name="a")
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gb_rolling = df.groupby("gr")["a"].rolling(1)
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result = gb_rolling.apply(foo, args=args_kwargs[0], kwargs=args_kwargs[1])
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tm.assert_series_equal(result, expected)
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