Old engine for Continuous Time Bayesian Networks. Superseded by reCTBN. 🐍
https://github.com/madlabunimib/PyCTBN
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389 lines
13 KiB
389 lines
13 KiB
"""
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Tests for the pandas.io.common functionalities
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"""
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from io import StringIO
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import mmap
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import os
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from pathlib import Path
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import pytest
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from pandas.compat import is_platform_windows
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import pandas.util._test_decorators as td
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import pandas as pd
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import pandas._testing as tm
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import pandas.io.common as icom
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class CustomFSPath:
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"""For testing fspath on unknown objects"""
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def __init__(self, path):
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self.path = path
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def __fspath__(self):
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return self.path
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# Functions that consume a string path and return a string or path-like object
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path_types = [str, CustomFSPath, Path]
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try:
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from py.path import local as LocalPath
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path_types.append(LocalPath)
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except ImportError:
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pass
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HERE = os.path.abspath(os.path.dirname(__file__))
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# https://github.com/cython/cython/issues/1720
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@pytest.mark.filterwarnings("ignore:can't resolve package:ImportWarning")
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class TestCommonIOCapabilities:
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data1 = """index,A,B,C,D
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foo,2,3,4,5
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bar,7,8,9,10
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baz,12,13,14,15
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qux,12,13,14,15
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foo2,12,13,14,15
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bar2,12,13,14,15
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"""
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def test_expand_user(self):
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filename = "~/sometest"
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expanded_name = icom._expand_user(filename)
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assert expanded_name != filename
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assert os.path.isabs(expanded_name)
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assert os.path.expanduser(filename) == expanded_name
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def test_expand_user_normal_path(self):
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filename = "/somefolder/sometest"
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expanded_name = icom._expand_user(filename)
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assert expanded_name == filename
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assert os.path.expanduser(filename) == expanded_name
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def test_stringify_path_pathlib(self):
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rel_path = icom.stringify_path(Path("."))
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assert rel_path == "."
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redundant_path = icom.stringify_path(Path("foo//bar"))
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assert redundant_path == os.path.join("foo", "bar")
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@td.skip_if_no("py.path")
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def test_stringify_path_localpath(self):
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path = os.path.join("foo", "bar")
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abs_path = os.path.abspath(path)
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lpath = LocalPath(path)
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assert icom.stringify_path(lpath) == abs_path
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def test_stringify_path_fspath(self):
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p = CustomFSPath("foo/bar.csv")
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result = icom.stringify_path(p)
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assert result == "foo/bar.csv"
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@pytest.mark.parametrize(
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"extension,expected",
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[
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("", None),
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(".gz", "gzip"),
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(".bz2", "bz2"),
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(".zip", "zip"),
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(".xz", "xz"),
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(".GZ", "gzip"),
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(".BZ2", "bz2"),
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(".ZIP", "zip"),
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(".XZ", "xz"),
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],
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)
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@pytest.mark.parametrize("path_type", path_types)
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def test_infer_compression_from_path(self, extension, expected, path_type):
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path = path_type("foo/bar.csv" + extension)
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compression = icom.infer_compression(path, compression="infer")
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assert compression == expected
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def test_get_filepath_or_buffer_with_path(self):
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filename = "~/sometest"
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filepath_or_buffer, _, _, should_close = icom.get_filepath_or_buffer(filename)
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assert filepath_or_buffer != filename
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assert os.path.isabs(filepath_or_buffer)
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assert os.path.expanduser(filename) == filepath_or_buffer
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assert not should_close
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def test_get_filepath_or_buffer_with_buffer(self):
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input_buffer = StringIO()
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filepath_or_buffer, _, _, should_close = icom.get_filepath_or_buffer(
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input_buffer
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)
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assert filepath_or_buffer == input_buffer
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assert not should_close
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def test_iterator(self):
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reader = pd.read_csv(StringIO(self.data1), chunksize=1)
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result = pd.concat(reader, ignore_index=True)
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expected = pd.read_csv(StringIO(self.data1))
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tm.assert_frame_equal(result, expected)
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# GH12153
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it = pd.read_csv(StringIO(self.data1), chunksize=1)
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first = next(it)
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tm.assert_frame_equal(first, expected.iloc[[0]])
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tm.assert_frame_equal(pd.concat(it), expected.iloc[1:])
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@pytest.mark.parametrize(
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"reader, module, error_class, fn_ext",
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[
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(pd.read_csv, "os", FileNotFoundError, "csv"),
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(pd.read_fwf, "os", FileNotFoundError, "txt"),
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(pd.read_excel, "xlrd", FileNotFoundError, "xlsx"),
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(pd.read_feather, "pyarrow", IOError, "feather"),
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(pd.read_hdf, "tables", FileNotFoundError, "h5"),
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(pd.read_stata, "os", FileNotFoundError, "dta"),
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(pd.read_sas, "os", FileNotFoundError, "sas7bdat"),
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(pd.read_json, "os", ValueError, "json"),
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(pd.read_pickle, "os", FileNotFoundError, "pickle"),
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],
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)
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def test_read_non_existent(self, reader, module, error_class, fn_ext):
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pytest.importorskip(module)
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path = os.path.join(HERE, "data", "does_not_exist." + fn_ext)
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msg1 = fr"File (b')?.+does_not_exist\.{fn_ext}'? does not exist"
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msg2 = fr"\[Errno 2\] No such file or directory: '.+does_not_exist\.{fn_ext}'"
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msg3 = "Expected object or value"
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msg4 = "path_or_buf needs to be a string file path or file-like"
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msg5 = (
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fr"\[Errno 2\] File .+does_not_exist\.{fn_ext} does not exist: "
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fr"'.+does_not_exist\.{fn_ext}'"
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)
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msg6 = fr"\[Errno 2\] 没有那个文件或目录: '.+does_not_exist\.{fn_ext}'"
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msg7 = (
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fr"\[Errno 2\] File o directory non esistente: '.+does_not_exist\.{fn_ext}'"
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)
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msg8 = fr"Failed to open local file.+does_not_exist\.{fn_ext}"
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with pytest.raises(
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error_class,
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match=fr"({msg1}|{msg2}|{msg3}|{msg4}|{msg5}|{msg6}|{msg7}|{msg8})",
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):
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reader(path)
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@pytest.mark.parametrize(
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"reader, module, error_class, fn_ext",
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[
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(pd.read_csv, "os", FileNotFoundError, "csv"),
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(pd.read_table, "os", FileNotFoundError, "csv"),
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(pd.read_fwf, "os", FileNotFoundError, "txt"),
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(pd.read_excel, "xlrd", FileNotFoundError, "xlsx"),
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(pd.read_feather, "pyarrow", IOError, "feather"),
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(pd.read_hdf, "tables", FileNotFoundError, "h5"),
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(pd.read_stata, "os", FileNotFoundError, "dta"),
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(pd.read_sas, "os", FileNotFoundError, "sas7bdat"),
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(pd.read_json, "os", ValueError, "json"),
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(pd.read_pickle, "os", FileNotFoundError, "pickle"),
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],
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)
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def test_read_expands_user_home_dir(
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self, reader, module, error_class, fn_ext, monkeypatch
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):
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pytest.importorskip(module)
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path = os.path.join("~", "does_not_exist." + fn_ext)
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monkeypatch.setattr(icom, "_expand_user", lambda x: os.path.join("foo", x))
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msg1 = fr"File (b')?.+does_not_exist\.{fn_ext}'? does not exist"
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msg2 = fr"\[Errno 2\] No such file or directory: '.+does_not_exist\.{fn_ext}'"
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msg3 = "Unexpected character found when decoding 'false'"
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msg4 = "path_or_buf needs to be a string file path or file-like"
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msg5 = (
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fr"\[Errno 2\] File .+does_not_exist\.{fn_ext} does not exist: "
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fr"'.+does_not_exist\.{fn_ext}'"
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)
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msg6 = fr"\[Errno 2\] 没有那个文件或目录: '.+does_not_exist\.{fn_ext}'"
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msg7 = (
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fr"\[Errno 2\] File o directory non esistente: '.+does_not_exist\.{fn_ext}'"
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)
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msg8 = fr"Failed to open local file.+does_not_exist\.{fn_ext}"
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with pytest.raises(
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error_class,
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match=fr"({msg1}|{msg2}|{msg3}|{msg4}|{msg5}|{msg6}|{msg7}|{msg8})",
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):
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reader(path)
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@pytest.mark.parametrize(
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"reader, module, path",
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[
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(pd.read_csv, "os", ("io", "data", "csv", "iris.csv")),
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(pd.read_table, "os", ("io", "data", "csv", "iris.csv")),
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(
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pd.read_fwf,
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"os",
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("io", "data", "fixed_width", "fixed_width_format.txt"),
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),
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(pd.read_excel, "xlrd", ("io", "data", "excel", "test1.xlsx")),
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(
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pd.read_feather,
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"pyarrow",
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("io", "data", "feather", "feather-0_3_1.feather"),
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),
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(
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pd.read_hdf,
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"tables",
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("io", "data", "legacy_hdf", "datetimetz_object.h5"),
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),
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(pd.read_stata, "os", ("io", "data", "stata", "stata10_115.dta")),
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(pd.read_sas, "os", ("io", "sas", "data", "test1.sas7bdat")),
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(pd.read_json, "os", ("io", "json", "data", "tsframe_v012.json")),
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(
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pd.read_pickle,
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"os",
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("io", "data", "pickle", "categorical.0.25.0.pickle"),
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),
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],
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)
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@pytest.mark.filterwarnings(
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"ignore:This method will be removed in future versions. "
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r"Use 'tree.iter\(\)' or 'list\(tree.iter\(\)\)' instead."
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":PendingDeprecationWarning"
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)
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def test_read_fspath_all(self, reader, module, path, datapath):
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pytest.importorskip(module)
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path = datapath(*path)
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mypath = CustomFSPath(path)
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result = reader(mypath)
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expected = reader(path)
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if path.endswith(".pickle"):
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# categorical
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tm.assert_categorical_equal(result, expected)
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else:
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tm.assert_frame_equal(result, expected)
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@pytest.mark.parametrize(
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"writer_name, writer_kwargs, module",
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[
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("to_csv", {}, "os"),
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("to_excel", {"engine": "xlwt"}, "xlwt"),
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("to_feather", {}, "pyarrow"),
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("to_html", {}, "os"),
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("to_json", {}, "os"),
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("to_latex", {}, "os"),
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("to_pickle", {}, "os"),
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("to_stata", {"time_stamp": pd.to_datetime("2019-01-01 00:00")}, "os"),
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],
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)
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def test_write_fspath_all(self, writer_name, writer_kwargs, module):
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p1 = tm.ensure_clean("string")
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p2 = tm.ensure_clean("fspath")
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df = pd.DataFrame({"A": [1, 2]})
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with p1 as string, p2 as fspath:
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pytest.importorskip(module)
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mypath = CustomFSPath(fspath)
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writer = getattr(df, writer_name)
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writer(string, **writer_kwargs)
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with open(string, "rb") as f:
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expected = f.read()
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writer(mypath, **writer_kwargs)
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with open(fspath, "rb") as f:
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result = f.read()
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assert result == expected
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def test_write_fspath_hdf5(self):
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# Same test as write_fspath_all, except HDF5 files aren't
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# necessarily byte-for-byte identical for a given dataframe, so we'll
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# have to read and compare equality
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pytest.importorskip("tables")
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df = pd.DataFrame({"A": [1, 2]})
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p1 = tm.ensure_clean("string")
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p2 = tm.ensure_clean("fspath")
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with p1 as string, p2 as fspath:
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mypath = CustomFSPath(fspath)
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df.to_hdf(mypath, key="bar")
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df.to_hdf(string, key="bar")
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result = pd.read_hdf(fspath, key="bar")
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expected = pd.read_hdf(string, key="bar")
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tm.assert_frame_equal(result, expected)
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@pytest.fixture
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def mmap_file(datapath):
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return datapath("io", "data", "csv", "test_mmap.csv")
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class TestMMapWrapper:
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def test_constructor_bad_file(self, mmap_file):
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non_file = StringIO("I am not a file")
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non_file.fileno = lambda: -1
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# the error raised is different on Windows
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if is_platform_windows():
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msg = "The parameter is incorrect"
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err = OSError
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else:
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msg = "[Errno 22]"
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err = mmap.error
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with pytest.raises(err, match=msg):
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icom._MMapWrapper(non_file)
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target = open(mmap_file, "r")
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target.close()
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msg = "I/O operation on closed file"
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with pytest.raises(ValueError, match=msg):
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icom._MMapWrapper(target)
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def test_get_attr(self, mmap_file):
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with open(mmap_file, "r") as target:
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wrapper = icom._MMapWrapper(target)
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attrs = dir(wrapper.mmap)
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attrs = [attr for attr in attrs if not attr.startswith("__")]
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attrs.append("__next__")
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for attr in attrs:
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assert hasattr(wrapper, attr)
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assert not hasattr(wrapper, "foo")
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def test_next(self, mmap_file):
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with open(mmap_file, "r") as target:
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wrapper = icom._MMapWrapper(target)
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lines = target.readlines()
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for line in lines:
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next_line = next(wrapper)
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assert next_line.strip() == line.strip()
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with pytest.raises(StopIteration, match=r"^$"):
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next(wrapper)
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def test_unknown_engine(self):
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with tm.ensure_clean() as path:
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df = tm.makeDataFrame()
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df.to_csv(path)
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with pytest.raises(ValueError, match="Unknown engine"):
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pd.read_csv(path, engine="pyt")
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def test_is_fsspec_url():
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assert icom.is_fsspec_url("gcs://pandas/somethingelse.com")
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assert icom.is_fsspec_url("gs://pandas/somethingelse.com")
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# the following is the only remote URL that is handled without fsspec
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assert not icom.is_fsspec_url("http://pandas/somethingelse.com")
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assert not icom.is_fsspec_url("random:pandas/somethingelse.com")
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assert not icom.is_fsspec_url("/local/path")
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assert not icom.is_fsspec_url("relative/local/path")
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