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Old engine for Continuous Time Bayesian Networks. Superseded by reCTBN. 🐍 https://github.com/madlabunimib/PyCTBN
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PyCTBN/venv/lib/python3.9/site-packages/pandas/tests/frame/test_subclass.py

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import numpy as np
import pytest
import pandas.util._test_decorators as td
import pandas as pd
from pandas import DataFrame, Index, MultiIndex, Series
import pandas._testing as tm
class TestDataFrameSubclassing:
def test_frame_subclassing_and_slicing(self):
# Subclass frame and ensure it returns the right class on slicing it
# In reference to PR 9632
class CustomSeries(Series):
@property
def _constructor(self):
return CustomSeries
def custom_series_function(self):
return "OK"
class CustomDataFrame(DataFrame):
"""
Subclasses pandas DF, fills DF with simulation results, adds some
custom plotting functions.
"""
def __init__(self, *args, **kw):
super().__init__(*args, **kw)
@property
def _constructor(self):
return CustomDataFrame
_constructor_sliced = CustomSeries
def custom_frame_function(self):
return "OK"
data = {"col1": range(10), "col2": range(10)}
cdf = CustomDataFrame(data)
# Did we get back our own DF class?
assert isinstance(cdf, CustomDataFrame)
# Do we get back our own Series class after selecting a column?
cdf_series = cdf.col1
assert isinstance(cdf_series, CustomSeries)
assert cdf_series.custom_series_function() == "OK"
# Do we get back our own DF class after slicing row-wise?
cdf_rows = cdf[1:5]
assert isinstance(cdf_rows, CustomDataFrame)
assert cdf_rows.custom_frame_function() == "OK"
# Make sure sliced part of multi-index frame is custom class
mcol = pd.MultiIndex.from_tuples([("A", "A"), ("A", "B")])
cdf_multi = CustomDataFrame([[0, 1], [2, 3]], columns=mcol)
assert isinstance(cdf_multi["A"], CustomDataFrame)
mcol = pd.MultiIndex.from_tuples([("A", ""), ("B", "")])
cdf_multi2 = CustomDataFrame([[0, 1], [2, 3]], columns=mcol)
assert isinstance(cdf_multi2["A"], CustomSeries)
def test_dataframe_metadata(self):
df = tm.SubclassedDataFrame(
{"X": [1, 2, 3], "Y": [1, 2, 3]}, index=["a", "b", "c"]
)
df.testattr = "XXX"
assert df.testattr == "XXX"
assert df[["X"]].testattr == "XXX"
assert df.loc[["a", "b"], :].testattr == "XXX"
assert df.iloc[[0, 1], :].testattr == "XXX"
# see gh-9776
assert df.iloc[0:1, :].testattr == "XXX"
# see gh-10553
unpickled = tm.round_trip_pickle(df)
tm.assert_frame_equal(df, unpickled)
assert df._metadata == unpickled._metadata
assert df.testattr == unpickled.testattr
def test_indexing_sliced(self):
# GH 11559
df = tm.SubclassedDataFrame(
{"X": [1, 2, 3], "Y": [4, 5, 6], "Z": [7, 8, 9]}, index=["a", "b", "c"]
)
res = df.loc[:, "X"]
exp = tm.SubclassedSeries([1, 2, 3], index=list("abc"), name="X")
tm.assert_series_equal(res, exp)
assert isinstance(res, tm.SubclassedSeries)
res = df.iloc[:, 1]
exp = tm.SubclassedSeries([4, 5, 6], index=list("abc"), name="Y")
tm.assert_series_equal(res, exp)
assert isinstance(res, tm.SubclassedSeries)
res = df.loc[:, "Z"]
exp = tm.SubclassedSeries([7, 8, 9], index=list("abc"), name="Z")
tm.assert_series_equal(res, exp)
assert isinstance(res, tm.SubclassedSeries)
res = df.loc["a", :]
exp = tm.SubclassedSeries([1, 4, 7], index=list("XYZ"), name="a")
tm.assert_series_equal(res, exp)
assert isinstance(res, tm.SubclassedSeries)
res = df.iloc[1, :]
exp = tm.SubclassedSeries([2, 5, 8], index=list("XYZ"), name="b")
tm.assert_series_equal(res, exp)
assert isinstance(res, tm.SubclassedSeries)
res = df.loc["c", :]
exp = tm.SubclassedSeries([3, 6, 9], index=list("XYZ"), name="c")
tm.assert_series_equal(res, exp)
assert isinstance(res, tm.SubclassedSeries)
def test_subclass_attr_err_propagation(self):
# GH 11808
class A(DataFrame):
@property
def bar(self):
return self.i_dont_exist
with pytest.raises(AttributeError, match=".*i_dont_exist.*"):
A().bar
def test_subclass_align(self):
# GH 12983
df1 = tm.SubclassedDataFrame(
{"a": [1, 3, 5], "b": [1, 3, 5]}, index=list("ACE")
)
df2 = tm.SubclassedDataFrame(
{"c": [1, 2, 4], "d": [1, 2, 4]}, index=list("ABD")
)
res1, res2 = df1.align(df2, axis=0)
exp1 = tm.SubclassedDataFrame(
{"a": [1, np.nan, 3, np.nan, 5], "b": [1, np.nan, 3, np.nan, 5]},
index=list("ABCDE"),
)
exp2 = tm.SubclassedDataFrame(
{"c": [1, 2, np.nan, 4, np.nan], "d": [1, 2, np.nan, 4, np.nan]},
index=list("ABCDE"),
)
assert isinstance(res1, tm.SubclassedDataFrame)
tm.assert_frame_equal(res1, exp1)
assert isinstance(res2, tm.SubclassedDataFrame)
tm.assert_frame_equal(res2, exp2)
res1, res2 = df1.a.align(df2.c)
assert isinstance(res1, tm.SubclassedSeries)
tm.assert_series_equal(res1, exp1.a)
assert isinstance(res2, tm.SubclassedSeries)
tm.assert_series_equal(res2, exp2.c)
def test_subclass_align_combinations(self):
# GH 12983
df = tm.SubclassedDataFrame({"a": [1, 3, 5], "b": [1, 3, 5]}, index=list("ACE"))
s = tm.SubclassedSeries([1, 2, 4], index=list("ABD"), name="x")
# frame + series
res1, res2 = df.align(s, axis=0)
exp1 = tm.SubclassedDataFrame(
{"a": [1, np.nan, 3, np.nan, 5], "b": [1, np.nan, 3, np.nan, 5]},
index=list("ABCDE"),
)
# name is lost when
exp2 = tm.SubclassedSeries(
[1, 2, np.nan, 4, np.nan], index=list("ABCDE"), name="x"
)
assert isinstance(res1, tm.SubclassedDataFrame)
tm.assert_frame_equal(res1, exp1)
assert isinstance(res2, tm.SubclassedSeries)
tm.assert_series_equal(res2, exp2)
# series + frame
res1, res2 = s.align(df)
assert isinstance(res1, tm.SubclassedSeries)
tm.assert_series_equal(res1, exp2)
assert isinstance(res2, tm.SubclassedDataFrame)
tm.assert_frame_equal(res2, exp1)
def test_subclass_iterrows(self):
# GH 13977
df = tm.SubclassedDataFrame({"a": [1]})
for i, row in df.iterrows():
assert isinstance(row, tm.SubclassedSeries)
tm.assert_series_equal(row, df.loc[i])
def test_subclass_stack(self):
# GH 15564
df = tm.SubclassedDataFrame(
[[1, 2, 3], [4, 5, 6], [7, 8, 9]],
index=["a", "b", "c"],
columns=["X", "Y", "Z"],
)
res = df.stack()
exp = tm.SubclassedSeries(
[1, 2, 3, 4, 5, 6, 7, 8, 9], index=[list("aaabbbccc"), list("XYZXYZXYZ")]
)
tm.assert_series_equal(res, exp)
def test_subclass_stack_multi(self):
# GH 15564
df = tm.SubclassedDataFrame(
[[10, 11, 12, 13], [20, 21, 22, 23], [30, 31, 32, 33], [40, 41, 42, 43]],
index=MultiIndex.from_tuples(
list(zip(list("AABB"), list("cdcd"))), names=["aaa", "ccc"]
),
columns=MultiIndex.from_tuples(
list(zip(list("WWXX"), list("yzyz"))), names=["www", "yyy"]
),
)
exp = tm.SubclassedDataFrame(
[
[10, 12],
[11, 13],
[20, 22],
[21, 23],
[30, 32],
[31, 33],
[40, 42],
[41, 43],
],
index=MultiIndex.from_tuples(
list(zip(list("AAAABBBB"), list("ccddccdd"), list("yzyzyzyz"))),
names=["aaa", "ccc", "yyy"],
),
columns=Index(["W", "X"], name="www"),
)
res = df.stack()
tm.assert_frame_equal(res, exp)
res = df.stack("yyy")
tm.assert_frame_equal(res, exp)
exp = tm.SubclassedDataFrame(
[
[10, 11],
[12, 13],
[20, 21],
[22, 23],
[30, 31],
[32, 33],
[40, 41],
[42, 43],
],
index=MultiIndex.from_tuples(
list(zip(list("AAAABBBB"), list("ccddccdd"), list("WXWXWXWX"))),
names=["aaa", "ccc", "www"],
),
columns=Index(["y", "z"], name="yyy"),
)
res = df.stack("www")
tm.assert_frame_equal(res, exp)
def test_subclass_stack_multi_mixed(self):
# GH 15564
df = tm.SubclassedDataFrame(
[
[10, 11, 12.0, 13.0],
[20, 21, 22.0, 23.0],
[30, 31, 32.0, 33.0],
[40, 41, 42.0, 43.0],
],
index=MultiIndex.from_tuples(
list(zip(list("AABB"), list("cdcd"))), names=["aaa", "ccc"]
),
columns=MultiIndex.from_tuples(
list(zip(list("WWXX"), list("yzyz"))), names=["www", "yyy"]
),
)
exp = tm.SubclassedDataFrame(
[
[10, 12.0],
[11, 13.0],
[20, 22.0],
[21, 23.0],
[30, 32.0],
[31, 33.0],
[40, 42.0],
[41, 43.0],
],
index=MultiIndex.from_tuples(
list(zip(list("AAAABBBB"), list("ccddccdd"), list("yzyzyzyz"))),
names=["aaa", "ccc", "yyy"],
),
columns=Index(["W", "X"], name="www"),
)
res = df.stack()
tm.assert_frame_equal(res, exp)
res = df.stack("yyy")
tm.assert_frame_equal(res, exp)
exp = tm.SubclassedDataFrame(
[
[10.0, 11.0],
[12.0, 13.0],
[20.0, 21.0],
[22.0, 23.0],
[30.0, 31.0],
[32.0, 33.0],
[40.0, 41.0],
[42.0, 43.0],
],
index=MultiIndex.from_tuples(
list(zip(list("AAAABBBB"), list("ccddccdd"), list("WXWXWXWX"))),
names=["aaa", "ccc", "www"],
),
columns=Index(["y", "z"], name="yyy"),
)
res = df.stack("www")
tm.assert_frame_equal(res, exp)
def test_subclass_unstack(self):
# GH 15564
df = tm.SubclassedDataFrame(
[[1, 2, 3], [4, 5, 6], [7, 8, 9]],
index=["a", "b", "c"],
columns=["X", "Y", "Z"],
)
res = df.unstack()
exp = tm.SubclassedSeries(
[1, 4, 7, 2, 5, 8, 3, 6, 9], index=[list("XXXYYYZZZ"), list("abcabcabc")]
)
tm.assert_series_equal(res, exp)
def test_subclass_unstack_multi(self):
# GH 15564
df = tm.SubclassedDataFrame(
[[10, 11, 12, 13], [20, 21, 22, 23], [30, 31, 32, 33], [40, 41, 42, 43]],
index=MultiIndex.from_tuples(
list(zip(list("AABB"), list("cdcd"))), names=["aaa", "ccc"]
),
columns=MultiIndex.from_tuples(
list(zip(list("WWXX"), list("yzyz"))), names=["www", "yyy"]
),
)
exp = tm.SubclassedDataFrame(
[[10, 20, 11, 21, 12, 22, 13, 23], [30, 40, 31, 41, 32, 42, 33, 43]],
index=Index(["A", "B"], name="aaa"),
columns=MultiIndex.from_tuples(
list(zip(list("WWWWXXXX"), list("yyzzyyzz"), list("cdcdcdcd"))),
names=["www", "yyy", "ccc"],
),
)
res = df.unstack()
tm.assert_frame_equal(res, exp)
res = df.unstack("ccc")
tm.assert_frame_equal(res, exp)
exp = tm.SubclassedDataFrame(
[[10, 30, 11, 31, 12, 32, 13, 33], [20, 40, 21, 41, 22, 42, 23, 43]],
index=Index(["c", "d"], name="ccc"),
columns=MultiIndex.from_tuples(
list(zip(list("WWWWXXXX"), list("yyzzyyzz"), list("ABABABAB"))),
names=["www", "yyy", "aaa"],
),
)
res = df.unstack("aaa")
tm.assert_frame_equal(res, exp)
def test_subclass_unstack_multi_mixed(self):
# GH 15564
df = tm.SubclassedDataFrame(
[
[10, 11, 12.0, 13.0],
[20, 21, 22.0, 23.0],
[30, 31, 32.0, 33.0],
[40, 41, 42.0, 43.0],
],
index=MultiIndex.from_tuples(
list(zip(list("AABB"), list("cdcd"))), names=["aaa", "ccc"]
),
columns=MultiIndex.from_tuples(
list(zip(list("WWXX"), list("yzyz"))), names=["www", "yyy"]
),
)
exp = tm.SubclassedDataFrame(
[
[10, 20, 11, 21, 12.0, 22.0, 13.0, 23.0],
[30, 40, 31, 41, 32.0, 42.0, 33.0, 43.0],
],
index=Index(["A", "B"], name="aaa"),
columns=MultiIndex.from_tuples(
list(zip(list("WWWWXXXX"), list("yyzzyyzz"), list("cdcdcdcd"))),
names=["www", "yyy", "ccc"],
),
)
res = df.unstack()
tm.assert_frame_equal(res, exp)
res = df.unstack("ccc")
tm.assert_frame_equal(res, exp)
exp = tm.SubclassedDataFrame(
[
[10, 30, 11, 31, 12.0, 32.0, 13.0, 33.0],
[20, 40, 21, 41, 22.0, 42.0, 23.0, 43.0],
],
index=Index(["c", "d"], name="ccc"),
columns=MultiIndex.from_tuples(
list(zip(list("WWWWXXXX"), list("yyzzyyzz"), list("ABABABAB"))),
names=["www", "yyy", "aaa"],
),
)
res = df.unstack("aaa")
tm.assert_frame_equal(res, exp)
def test_subclass_pivot(self):
# GH 15564
df = tm.SubclassedDataFrame(
{
"index": ["A", "B", "C", "C", "B", "A"],
"columns": ["One", "One", "One", "Two", "Two", "Two"],
"values": [1.0, 2.0, 3.0, 3.0, 2.0, 1.0],
}
)
pivoted = df.pivot(index="index", columns="columns", values="values")
expected = tm.SubclassedDataFrame(
{
"One": {"A": 1.0, "B": 2.0, "C": 3.0},
"Two": {"A": 1.0, "B": 2.0, "C": 3.0},
}
)
expected.index.name, expected.columns.name = "index", "columns"
tm.assert_frame_equal(pivoted, expected)
def test_subclassed_melt(self):
# GH 15564
cheese = tm.SubclassedDataFrame(
{
"first": ["John", "Mary"],
"last": ["Doe", "Bo"],
"height": [5.5, 6.0],
"weight": [130, 150],
}
)
melted = pd.melt(cheese, id_vars=["first", "last"])
expected = tm.SubclassedDataFrame(
[
["John", "Doe", "height", 5.5],
["Mary", "Bo", "height", 6.0],
["John", "Doe", "weight", 130],
["Mary", "Bo", "weight", 150],
],
columns=["first", "last", "variable", "value"],
)
tm.assert_frame_equal(melted, expected)
def test_subclassed_wide_to_long(self):
# GH 9762
np.random.seed(123)
x = np.random.randn(3)
df = tm.SubclassedDataFrame(
{
"A1970": {0: "a", 1: "b", 2: "c"},
"A1980": {0: "d", 1: "e", 2: "f"},
"B1970": {0: 2.5, 1: 1.2, 2: 0.7},
"B1980": {0: 3.2, 1: 1.3, 2: 0.1},
"X": dict(zip(range(3), x)),
}
)
df["id"] = df.index
exp_data = {
"X": x.tolist() + x.tolist(),
"A": ["a", "b", "c", "d", "e", "f"],
"B": [2.5, 1.2, 0.7, 3.2, 1.3, 0.1],
"year": [1970, 1970, 1970, 1980, 1980, 1980],
"id": [0, 1, 2, 0, 1, 2],
}
expected = tm.SubclassedDataFrame(exp_data)
expected = expected.set_index(["id", "year"])[["X", "A", "B"]]
long_frame = pd.wide_to_long(df, ["A", "B"], i="id", j="year")
tm.assert_frame_equal(long_frame, expected)
def test_subclassed_apply(self):
# GH 19822
def check_row_subclass(row):
assert isinstance(row, tm.SubclassedSeries)
def strech(row):
if row["variable"] == "height":
row["value"] += 0.5
return row
df = tm.SubclassedDataFrame(
[
["John", "Doe", "height", 5.5],
["Mary", "Bo", "height", 6.0],
["John", "Doe", "weight", 130],
["Mary", "Bo", "weight", 150],
],
columns=["first", "last", "variable", "value"],
)
df.apply(lambda x: check_row_subclass(x))
df.apply(lambda x: check_row_subclass(x), axis=1)
expected = tm.SubclassedDataFrame(
[
["John", "Doe", "height", 6.0],
["Mary", "Bo", "height", 6.5],
["John", "Doe", "weight", 130],
["Mary", "Bo", "weight", 150],
],
columns=["first", "last", "variable", "value"],
)
result = df.apply(lambda x: strech(x), axis=1)
assert isinstance(result, tm.SubclassedDataFrame)
tm.assert_frame_equal(result, expected)
expected = tm.SubclassedDataFrame([[1, 2, 3], [1, 2, 3], [1, 2, 3], [1, 2, 3]])
result = df.apply(lambda x: tm.SubclassedSeries([1, 2, 3]), axis=1)
assert isinstance(result, tm.SubclassedDataFrame)
tm.assert_frame_equal(result, expected)
result = df.apply(lambda x: [1, 2, 3], axis=1, result_type="expand")
assert isinstance(result, tm.SubclassedDataFrame)
tm.assert_frame_equal(result, expected)
expected = tm.SubclassedSeries([[1, 2, 3], [1, 2, 3], [1, 2, 3], [1, 2, 3]])
result = df.apply(lambda x: [1, 2, 3], axis=1)
assert not isinstance(result, tm.SubclassedDataFrame)
tm.assert_series_equal(result, expected)
def test_subclassed_reductions(self, all_reductions):
# GH 25596
df = tm.SubclassedDataFrame({"A": [1, 2, 3], "B": [4, 5, 6], "C": [7, 8, 9]})
result = getattr(df, all_reductions)()
assert isinstance(result, tm.SubclassedSeries)
def test_subclassed_count(self):
df = tm.SubclassedDataFrame(
{
"Person": ["John", "Myla", "Lewis", "John", "Myla"],
"Age": [24.0, np.nan, 21.0, 33, 26],
"Single": [False, True, True, True, False],
}
)
result = df.count()
assert isinstance(result, tm.SubclassedSeries)
df = tm.SubclassedDataFrame({"A": [1, 0, 3], "B": [0, 5, 6], "C": [7, 8, 0]})
result = df.count()
assert isinstance(result, tm.SubclassedSeries)
df = tm.SubclassedDataFrame(
[[10, 11, 12, 13], [20, 21, 22, 23], [30, 31, 32, 33], [40, 41, 42, 43]],
index=MultiIndex.from_tuples(
list(zip(list("AABB"), list("cdcd"))), names=["aaa", "ccc"]
),
columns=MultiIndex.from_tuples(
list(zip(list("WWXX"), list("yzyz"))), names=["www", "yyy"]
),
)
result = df.count(level=1)
assert isinstance(result, tm.SubclassedDataFrame)
df = tm.SubclassedDataFrame()
result = df.count()
assert isinstance(result, tm.SubclassedSeries)
def test_isin(self):
df = tm.SubclassedDataFrame(
{"num_legs": [2, 4], "num_wings": [2, 0]}, index=["falcon", "dog"]
)
result = df.isin([0, 2])
assert isinstance(result, tm.SubclassedDataFrame)
def test_duplicated(self):
df = tm.SubclassedDataFrame({"A": [1, 2, 3], "B": [4, 5, 6], "C": [7, 8, 9]})
result = df.duplicated()
assert isinstance(result, tm.SubclassedSeries)
df = tm.SubclassedDataFrame()
result = df.duplicated()
assert isinstance(result, tm.SubclassedSeries)
@pytest.mark.parametrize("idx_method", ["idxmax", "idxmin"])
def test_idx(self, idx_method):
df = tm.SubclassedDataFrame({"A": [1, 2, 3], "B": [4, 5, 6], "C": [7, 8, 9]})
result = getattr(df, idx_method)()
assert isinstance(result, tm.SubclassedSeries)
def test_dot(self):
df = tm.SubclassedDataFrame([[0, 1, -2, -1], [1, 1, 1, 1]])
s = tm.SubclassedSeries([1, 1, 2, 1])
result = df.dot(s)
assert isinstance(result, tm.SubclassedSeries)
df = tm.SubclassedDataFrame([[0, 1, -2, -1], [1, 1, 1, 1]])
s = tm.SubclassedDataFrame([1, 1, 2, 1])
result = df.dot(s)
assert isinstance(result, tm.SubclassedDataFrame)
def test_memory_usage(self):
df = tm.SubclassedDataFrame({"A": [1, 2, 3], "B": [4, 5, 6], "C": [7, 8, 9]})
result = df.memory_usage()
assert isinstance(result, tm.SubclassedSeries)
result = df.memory_usage(index=False)
assert isinstance(result, tm.SubclassedSeries)
@td.skip_if_no_scipy
def test_corrwith(self):
index = ["a", "b", "c", "d", "e"]
columns = ["one", "two", "three", "four"]
df1 = tm.SubclassedDataFrame(
np.random.randn(5, 4), index=index, columns=columns
)
df2 = tm.SubclassedDataFrame(
np.random.randn(4, 4), index=index[:4], columns=columns
)
correls = df1.corrwith(df2, axis=1, drop=True, method="kendall")
assert isinstance(correls, (tm.SubclassedSeries))
def test_asof(self):
N = 3
rng = pd.date_range("1/1/1990", periods=N, freq="53s")
df = tm.SubclassedDataFrame(
{
"A": [np.nan, np.nan, np.nan],
"B": [np.nan, np.nan, np.nan],
"C": [np.nan, np.nan, np.nan],
},
index=rng,
)
result = df.asof(rng[-2:])
assert isinstance(result, tm.SubclassedDataFrame)
result = df.asof(rng[-2])
assert isinstance(result, tm.SubclassedSeries)
result = df.asof("1989-12-31")
assert isinstance(result, tm.SubclassedSeries)
def test_idxmin_preserves_subclass(self):
# GH 28330
df = tm.SubclassedDataFrame({"A": [1, 2, 3], "B": [4, 5, 6], "C": [7, 8, 9]})
result = df.idxmin()
assert isinstance(result, tm.SubclassedSeries)
def test_idxmax_preserves_subclass(self):
# GH 28330
df = tm.SubclassedDataFrame({"A": [1, 2, 3], "B": [4, 5, 6], "C": [7, 8, 9]})
result = df.idxmax()
assert isinstance(result, tm.SubclassedSeries)
def test_equals_subclass(self):
# https://github.com/pandas-dev/pandas/pull/34402
# allow subclass in both directions
df1 = pd.DataFrame({"a": [1, 2, 3]})
df2 = tm.SubclassedDataFrame({"a": [1, 2, 3]})
assert df1.equals(df2)
assert df2.equals(df1)