Old engine for Continuous Time Bayesian Networks. Superseded by reCTBN. 🐍
https://github.com/madlabunimib/PyCTBN
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345 lines
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345 lines
22 KiB
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<li class="toctree-l1"><a class="reference internal" href="PyCTBN.PyCTBN.html">PyCTBN.PyCTBN package</a><ul>
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<li class="toctree-l2"><a class="reference internal" href="PyCTBN.PyCTBN.html#module-PyCTBN.PyCTBN">Module contents</a></li>
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<li class="toctree-l2"><a class="reference internal" href="examples.html#parameters-estimation-example">Parameters Estimation Example</a></li>
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<li class="toctree-l2"><a class="reference internal" href="examples.html#structure-estimation-example">Structure Estimation Example</a></li>
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<div id="content" class="hfeed entry-container hentry">
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<div class="section" id="pyctbn-tests-estimators-package">
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<h1>PyCTBN.tests.estimators package<a class="headerlink" href="#pyctbn-tests-estimators-package" title="Permalink to this headline">¶</a></h1>
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<div class="section" id="submodules">
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<h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this headline">¶</a></h2>
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</div>
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<div class="section" id="module-PyCTBN.tests.estimators.test_parameters_estimator">
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<span id="pyctbn-tests-estimators-test-parameters-estimator-module"></span><h2>PyCTBN.tests.estimators.test_parameters_estimator module<a class="headerlink" href="#module-PyCTBN.tests.estimators.test_parameters_estimator" title="Permalink to this headline">¶</a></h2>
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<dl class="py class">
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<dt id="PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior">
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<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.tests.estimators.test_parameters_estimator.</code><code class="sig-name descname">TestParametersEstimatior</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">methodName</span><span class="o">=</span><span class="default_value">'runTest'</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior" title="Permalink to this definition">¶</a></dt>
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<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">unittest.case.TestCase</span></code></p>
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<dl class="py method">
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<dt id="PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.aux_import_sampled_cims">
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<code class="sig-name descname">aux_import_sampled_cims</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">cims_label</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.aux_import_sampled_cims" title="Permalink to this definition">¶</a></dt>
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<dd></dd></dl>
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<dl class="py method">
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<dt id="PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.cim_equality_test">
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<code class="sig-name descname">cim_equality_test</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">cim1</span></em>, <em class="sig-param"><span class="n">cim2</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.cim_equality_test" title="Permalink to this definition">¶</a></dt>
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<dd></dd></dl>
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<dl class="py method">
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<dt id="PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.equality_of_cims_of_node">
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<code class="sig-name descname">equality_of_cims_of_node</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">sampled_cims</span></em>, <em class="sig-param"><span class="n">estimated_cims</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.equality_of_cims_of_node" title="Permalink to this definition">¶</a></dt>
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<dd></dd></dl>
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<dl class="py method">
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<dt id="PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.setUpClass">
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<em class="property">classmethod </em><code class="sig-name descname">setUpClass</code><span class="sig-paren">(</span><span class="sig-paren">)</span> → None<a class="headerlink" href="#PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.setUpClass" title="Permalink to this definition">¶</a></dt>
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<dd><p>Hook method for setting up class fixture before running tests in the class.</p>
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</dd></dl>
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<dl class="py method">
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<dt id="PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.test_compute_parameters_for_node">
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<code class="sig-name descname">test_compute_parameters_for_node</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.test_compute_parameters_for_node" title="Permalink to this definition">¶</a></dt>
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<dd></dd></dl>
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<dl class="py method">
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<dt id="PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.test_fast_init">
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<code class="sig-name descname">test_fast_init</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior.test_fast_init" title="Permalink to this definition">¶</a></dt>
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<dd></dd></dl>
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</dd></dl>
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</div>
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<div class="section" id="module-PyCTBN.tests.estimators.test_structure_constraint_based_estimator">
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<span id="pyctbn-tests-estimators-test-structure-constraint-based-estimator-module"></span><h2>PyCTBN.tests.estimators.test_structure_constraint_based_estimator module<a class="headerlink" href="#module-PyCTBN.tests.estimators.test_structure_constraint_based_estimator" title="Permalink to this headline">¶</a></h2>
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<dl class="py class">
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<dt id="PyCTBN.tests.estimators.test_structure_constraint_based_estimator.TestStructureConstraintBasedEstimator">
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<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.tests.estimators.test_structure_constraint_based_estimator.</code><code class="sig-name descname">TestStructureConstraintBasedEstimator</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">methodName</span><span class="o">=</span><span class="default_value">'runTest'</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_constraint_based_estimator.TestStructureConstraintBasedEstimator" title="Permalink to this definition">¶</a></dt>
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<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">unittest.case.TestCase</span></code></p>
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<dl class="py method">
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<dt id="PyCTBN.tests.estimators.test_structure_constraint_based_estimator.TestStructureConstraintBasedEstimator.setUpClass">
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<em class="property">classmethod </em><code class="sig-name descname">setUpClass</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_constraint_based_estimator.TestStructureConstraintBasedEstimator.setUpClass" title="Permalink to this definition">¶</a></dt>
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<dd><p>Hook method for setting up class fixture before running tests in the class.</p>
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</dd></dl>
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<dl class="py method">
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<dt id="PyCTBN.tests.estimators.test_structure_constraint_based_estimator.TestStructureConstraintBasedEstimator.test_structure_1">
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<code class="sig-name descname">test_structure_1</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_constraint_based_estimator.TestStructureConstraintBasedEstimator.test_structure_1" title="Permalink to this definition">¶</a></dt>
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<dd></dd></dl>
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<dl class="py method">
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<dt id="PyCTBN.tests.estimators.test_structure_constraint_based_estimator.TestStructureConstraintBasedEstimator.test_structure_2">
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<code class="sig-name descname">test_structure_2</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_constraint_based_estimator.TestStructureConstraintBasedEstimator.test_structure_2" title="Permalink to this definition">¶</a></dt>
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<dd></dd></dl>
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<dl class="py method">
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<dt id="PyCTBN.tests.estimators.test_structure_constraint_based_estimator.TestStructureConstraintBasedEstimator.test_structure_3">
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<code class="sig-name descname">test_structure_3</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_constraint_based_estimator.TestStructureConstraintBasedEstimator.test_structure_3" title="Permalink to this definition">¶</a></dt>
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<dd></dd></dl>
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</dd></dl>
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</div>
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<div class="section" id="module-PyCTBN.tests.estimators.test_structure_estimator">
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<span id="pyctbn-tests-estimators-test-structure-estimator-module"></span><h2>PyCTBN.tests.estimators.test_structure_estimator module<a class="headerlink" href="#module-PyCTBN.tests.estimators.test_structure_estimator" title="Permalink to this headline">¶</a></h2>
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<dl class="py class">
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<dt id="PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator">
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<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.tests.estimators.test_structure_estimator.</code><code class="sig-name descname">TestStructureEstimator</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">methodName</span><span class="o">=</span><span class="default_value">'runTest'</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator" title="Permalink to this definition">¶</a></dt>
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<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">unittest.case.TestCase</span></code></p>
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<dl class="py method">
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<dt id="PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.setUpClass">
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<em class="property">classmethod </em><code class="sig-name descname">setUpClass</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.setUpClass" title="Permalink to this definition">¶</a></dt>
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<dd><p>Hook method for setting up class fixture before running tests in the class.</p>
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</dd></dl>
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<dl class="py method">
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<dt id="PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_adjacency_matrix">
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<code class="sig-name descname">test_adjacency_matrix</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_adjacency_matrix" title="Permalink to this definition">¶</a></dt>
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<dd></dd></dl>
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<dl class="py method">
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<dt id="PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_build_complete_graph">
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<code class="sig-name descname">test_build_complete_graph</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_build_complete_graph" title="Permalink to this definition">¶</a></dt>
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<dd></dd></dl>
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<dl class="py method">
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<dt id="PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_build_removable_edges_matrix">
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<code class="sig-name descname">test_build_removable_edges_matrix</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_build_removable_edges_matrix" title="Permalink to this definition">¶</a></dt>
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<dd></dd></dl>
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<dl class="py method">
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<dt id="PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_generate_possible_sub_sets_of_size">
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<code class="sig-name descname">test_generate_possible_sub_sets_of_size</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_generate_possible_sub_sets_of_size" title="Permalink to this definition">¶</a></dt>
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<dd></dd></dl>
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<dl class="py method">
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<dt id="PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_init">
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<code class="sig-name descname">test_init</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_init" title="Permalink to this definition">¶</a></dt>
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<dd></dd></dl>
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<dl class="py method">
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<dt id="PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_save_plot_estimated_graph">
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<code class="sig-name descname">test_save_plot_estimated_graph</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_save_plot_estimated_graph" title="Permalink to this definition">¶</a></dt>
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<dd></dd></dl>
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<dl class="py method">
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<dt id="PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_save_results">
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<code class="sig-name descname">test_save_results</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_save_results" title="Permalink to this definition">¶</a></dt>
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<dd></dd></dl>
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<dl class="py method">
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<dt id="PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_time">
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<code class="sig-name descname">test_time</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator.test_time" title="Permalink to this definition">¶</a></dt>
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<dd></dd></dl>
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</dd></dl>
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</div>
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<div class="section" id="module-PyCTBN.tests.estimators.test_structure_score_based_estimator">
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<span id="pyctbn-tests-estimators-test-structure-score-based-estimator-module"></span><h2>PyCTBN.tests.estimators.test_structure_score_based_estimator module<a class="headerlink" href="#module-PyCTBN.tests.estimators.test_structure_score_based_estimator" title="Permalink to this headline">¶</a></h2>
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<dl class="py class">
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<dt id="PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator">
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<em class="property">class </em><code class="sig-prename descclassname">PyCTBN.tests.estimators.test_structure_score_based_estimator.</code><code class="sig-name descname">TestStructureScoreBasedEstimator</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">methodName</span><span class="o">=</span><span class="default_value">'runTest'</span></em><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator" title="Permalink to this definition">¶</a></dt>
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<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">unittest.case.TestCase</span></code></p>
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<dl class="py method">
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<dt id="PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator.setUpClass">
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<em class="property">classmethod </em><code class="sig-name descname">setUpClass</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator.setUpClass" title="Permalink to this definition">¶</a></dt>
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<dd><p>Hook method for setting up class fixture before running tests in the class.</p>
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</dd></dl>
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<dl class="py method">
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<dt id="PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator.test_structure_1">
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<code class="sig-name descname">test_structure_1</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator.test_structure_1" title="Permalink to this definition">¶</a></dt>
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<dd></dd></dl>
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<dl class="py method">
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<dt id="PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator.test_structure_2">
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<code class="sig-name descname">test_structure_2</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator.test_structure_2" title="Permalink to this definition">¶</a></dt>
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<dd></dd></dl>
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<dl class="py method">
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<dt id="PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator.test_structure_3">
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<code class="sig-name descname">test_structure_3</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator.test_structure_3" title="Permalink to this definition">¶</a></dt>
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<dd></dd></dl>
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<dl class="py method">
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<dt id="PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator.test_structure_monoprocesso">
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<code class="sig-name descname">test_structure_monoprocesso</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#PyCTBN.tests.estimators.test_structure_score_based_estimator.TestStructureScoreBasedEstimator.test_structure_monoprocesso" title="Permalink to this definition">¶</a></dt>
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<dd></dd></dl>
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</dd></dl>
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</div>
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<div class="section" id="module-PyCTBN.tests.estimators">
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<span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-PyCTBN.tests.estimators" title="Permalink to this headline">¶</a></h2>
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