#!/usr/bin/env python3 # License: MIT License import unittest import numpy as np import glob import os from pyctbn.legacy.structure_graph.network_graph import NetworkGraph from pyctbn.legacy.structure_graph.sample_path import SamplePath from pyctbn.legacy.structure_graph.set_of_cims import SetOfCims from pyctbn.legacy.estimators.parameters_estimator import ParametersEstimator from pyctbn.legacy.utility.json_importer import JsonImporter class TestParametersEstimatior(unittest.TestCase): @classmethod def setUpClass(cls) -> None: cls.read_files = glob.glob(os.path.join('./tests/data/networks_and_trajectories_binary_data_01_3.json', "*.json")) cls.array_indx = 0 cls.importer = JsonImporter('./tests/data/networks_and_trajectories_binary_data_01_3.json', 'samples', 'dyn.str', 'variables', 'Time', 'Name') cls.importer.import_data(cls.array_indx) cls.s1 = SamplePath(cls.importer) cls.s1.build_trajectories() cls.s1.build_structure() print(cls.s1.structure.edges) print(cls.s1.structure.nodes_values) def test_fast_init(self): for node in self.s1.structure.nodes_labels: g = NetworkGraph(self.s1.structure) g.fast_init(node) p1 = ParametersEstimator(self.s1.trajectories, g) self.assertEqual(p1._trajectories, self.s1.trajectories) self.assertEqual(p1._net_graph, g) self.assertIsNone(p1._single_set_of_cims) p1.fast_init(node) self.assertIsInstance(p1._single_set_of_cims, SetOfCims) def test_compute_parameters_for_node(self): for indx, node in enumerate(self.s1.structure.nodes_labels): print(node) g = NetworkGraph(self.s1.structure) g.fast_init(node) p1 = ParametersEstimator(self.s1.trajectories, g) p1.fast_init(node) sofc1 = p1.compute_parameters_for_node(node) sampled_cims = self.aux_import_sampled_cims('dyn.cims') sc = list(sampled_cims.values()) self.equality_of_cims_of_node(sc[indx], sofc1._actual_cims) def equality_of_cims_of_node(self, sampled_cims, estimated_cims): self.assertEqual(len(sampled_cims), len(estimated_cims)) for c1, c2 in zip(sampled_cims, estimated_cims): self.cim_equality_test(c1, c2.cim) def cim_equality_test(self, cim1, cim2): for r1, r2 in zip(cim1, cim2): self.assertTrue(np.all(np.isclose(r1, r2, 1e01))) def aux_import_sampled_cims(self, cims_label): i1 = JsonImporter('./tests/data/networks_and_trajectories_binary_data_01_3.json', '', '', '', '', '') raw_data = i1.read_json_file() return i1.import_sampled_cims(raw_data, self.array_indx, cims_label) if __name__ == '__main__': unittest.main()