import sys sys.path.append("../../classes/") import glob import math import os import unittest import networkx as nx import numpy as np import psutil from line_profiler import LineProfiler import copy import utility.cache as ch import structure_graph.sample_path as sp import estimators.structure_score_based_estimator as se import utility.json_importer as ji class TestTabuSearch(unittest.TestCase): @classmethod def setUpClass(cls): #cls.read_files = glob.glob(os.path.join('../../data', "*.json")) cls.importer = ji.JsonImporter("../../data/networks_and_trajectories_binary_data_20.json", 'samples', 'dyn.str', 'variables', 'Time', 'Name') cls.s1 = sp.SamplePath(cls.importer) cls.s1.build_trajectories() cls.s1.build_structure() def test_structure(self): true_edges = copy.deepcopy(self.s1.structure.edges) true_edges = set(map(tuple, true_edges)) se1 = se.StructureScoreBasedEstimator(self.s1) edges = se1.estimate_structure( max_parents = None, iterations_number = 30, patience = None, tabu_length = 17, tabu_rules_duration = 20, optimizer = 'tabu' ) self.assertEqual(edges, true_edges) if __name__ == '__main__': unittest.main()