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b/docs-out/_build/html/PyCTBN.PyCTBN.html index bd6313d..29ef30a 100644 --- a/docs-out/_build/html/PyCTBN.PyCTBN.html +++ b/docs-out/_build/html/PyCTBN.PyCTBN.html @@ -142,18 +142,22 @@
  • PyCTBN.PyCTBN.structure_graph package
  • PyCTBN.PyCTBN.utility package

    Submodules¶

    +
    +

    PyCTBN.basic_main module¶

    +
    +
    +

    PyCTBN.setup module¶

    +

    Module contents¶

    diff --git a/docs-out/_build/html/PyCTBN.tests.html b/docs-out/_build/html/PyCTBN.tests.html index 83be260..7036b72 100644 --- a/docs-out/_build/html/PyCTBN.tests.html +++ b/docs-out/_build/html/PyCTBN.tests.html @@ -137,11 +137,13 @@
  • PyCTBN.tests.structure_graph package
    • diff --git a/docs-out/_build/html/PyCTBN.tests.structure_graph.html b/docs-out/_build/html/PyCTBN.tests.structure_graph.html index f3dae53..a63e83d 100644 --- a/docs-out/_build/html/PyCTBN.tests.structure_graph.html +++ b/docs-out/_build/html/PyCTBN.tests.structure_graph.html @@ -146,6 +146,25 @@ + +
    +

    PyCTBN.tests.structure_graph.test_networkgenerator module¶

    +
    +
    +class PyCTBN.tests.structure_graph.test_networkgenerator.TestNetworkGenerator(methodName='runTest')¶
    +

    Bases: unittest.case.TestCase

    +
    +
    +test_generate_cims()¶
    +
    + +
    +
    +test_generate_graph()¶
    +
    + +
    +

    PyCTBN.tests.structure_graph.test_networkgraph module¶

    @@ -443,6 +462,41 @@ +
    +
    +

    PyCTBN.tests.structure_graph.test_trajectorygenerator module¶

    +
    +
    +class PyCTBN.tests.structure_graph.test_trajectorygenerator.TestTrajectoryGenerator(methodName='runTest')¶
    +

    Bases: unittest.case.TestCase

    +
    +
    +classmethod setUpClass() → None¶
    +

    Hook method for setting up class fixture before running tests in the class.

    +
    + +
    +
    +test_generated_trajectory()¶
    +
    + +
    +
    +test_generated_trajectory_max_tr()¶
    +
    + +
    +
    +test_init()¶
    +
    + +
    +
    +test_multi_trajectory()¶
    +
    + +
    +

    Module contents¶

    diff --git a/docs-out/_build/html/_sources/PyCTBN.PyCTBN.structure_graph.rst.txt b/docs-out/_build/html/_sources/PyCTBN.PyCTBN.structure_graph.rst.txt index c236017..f00477b 100644 --- a/docs-out/_build/html/_sources/PyCTBN.PyCTBN.structure_graph.rst.txt +++ b/docs-out/_build/html/_sources/PyCTBN.PyCTBN.structure_graph.rst.txt @@ -12,6 +12,14 @@ PyCTBN.PyCTBN.structure\_graph.conditional\_intensity\_matrix module :undoc-members: :show-inheritance: +PyCTBN.PyCTBN.structure\_graph.network\_generator module +-------------------------------------------------------- + +.. automodule:: PyCTBN.PyCTBN.structure_graph.network_generator + :members: + :undoc-members: + :show-inheritance: + PyCTBN.PyCTBN.structure\_graph.network\_graph module ---------------------------------------------------- @@ -52,6 +60,14 @@ PyCTBN.PyCTBN.structure\_graph.trajectory module :undoc-members: :show-inheritance: +PyCTBN.PyCTBN.structure\_graph.trajectory\_generator module +----------------------------------------------------------- + +.. automodule:: PyCTBN.PyCTBN.structure_graph.trajectory_generator + :members: + :undoc-members: + :show-inheritance: + Module contents --------------- diff --git a/docs-out/_build/html/_sources/PyCTBN.PyCTBN.utility.rst.txt b/docs-out/_build/html/_sources/PyCTBN.PyCTBN.utility.rst.txt index 1a8a33d..d804edf 100644 --- a/docs-out/_build/html/_sources/PyCTBN.PyCTBN.utility.rst.txt +++ b/docs-out/_build/html/_sources/PyCTBN.PyCTBN.utility.rst.txt @@ -4,6 +4,14 @@ PyCTBN.PyCTBN.utility package Submodules ---------- +PyCTBN.PyCTBN.utility.abstract\_exporter module +----------------------------------------------- + +.. automodule:: PyCTBN.PyCTBN.utility.abstract_exporter + :members: + :undoc-members: + :show-inheritance: + PyCTBN.PyCTBN.utility.abstract\_importer module ----------------------------------------------- @@ -20,6 +28,14 @@ PyCTBN.PyCTBN.utility.cache module :undoc-members: :show-inheritance: +PyCTBN.PyCTBN.utility.json\_exporter module +------------------------------------------- + +.. automodule:: PyCTBN.PyCTBN.utility.json_exporter + :members: + :undoc-members: + :show-inheritance: + PyCTBN.PyCTBN.utility.json\_importer module ------------------------------------------- diff --git a/docs-out/_build/html/_sources/PyCTBN.rst.txt b/docs-out/_build/html/_sources/PyCTBN.rst.txt index db94109..3aaa3ce 100644 --- a/docs-out/_build/html/_sources/PyCTBN.rst.txt +++ b/docs-out/_build/html/_sources/PyCTBN.rst.txt @@ -8,10 +8,27 @@ Subpackages :maxdepth: 4 PyCTBN.PyCTBN + PyCTBN.tests Submodules ---------- +PyCTBN.basic\_main module +------------------------- + +.. automodule:: PyCTBN.basic_main + :members: + :undoc-members: + :show-inheritance: + +PyCTBN.setup module +------------------- + +.. automodule:: PyCTBN.setup + :members: + :undoc-members: + :show-inheritance: + Module contents --------------- diff --git a/docs-out/_build/html/_sources/PyCTBN.tests.structure_graph.rst.txt b/docs-out/_build/html/_sources/PyCTBN.tests.structure_graph.rst.txt index 257d48d..7240498 100644 --- a/docs-out/_build/html/_sources/PyCTBN.tests.structure_graph.rst.txt +++ b/docs-out/_build/html/_sources/PyCTBN.tests.structure_graph.rst.txt @@ -12,6 +12,14 @@ PyCTBN.tests.structure\_graph.test\_cim module :undoc-members: :show-inheritance: +PyCTBN.tests.structure\_graph.test\_networkgenerator module +----------------------------------------------------------- + +.. automodule:: PyCTBN.tests.structure_graph.test_networkgenerator + :members: + :undoc-members: + :show-inheritance: + PyCTBN.tests.structure\_graph.test\_networkgraph module ------------------------------------------------------- @@ -52,6 +60,14 @@ PyCTBN.tests.structure\_graph.test\_trajectory module :undoc-members: :show-inheritance: +PyCTBN.tests.structure\_graph.test\_trajectorygenerator module +-------------------------------------------------------------- + +.. automodule:: PyCTBN.tests.structure_graph.test_trajectorygenerator + :members: + :undoc-members: + :show-inheritance: + Module contents --------------- diff --git a/docs-out/_build/html/_sources/example.rst.txt b/docs-out/_build/html/_sources/example.rst.txt new file mode 100644 index 0000000..7789de1 --- /dev/null +++ b/docs-out/_build/html/_sources/example.rst.txt @@ -0,0 +1,7 @@ +example module +============== + +.. automodule:: example + :members: + :undoc-members: + :show-inheritance: diff --git a/docs-out/_build/html/_sources/modules.rst.txt b/docs-out/_build/html/_sources/modules.rst.txt index 4ec310b..aa7e7d5 100644 --- a/docs-out/_build/html/_sources/modules.rst.txt +++ b/docs-out/_build/html/_sources/modules.rst.txt @@ -4,5 +4,6 @@ PyCTBN .. toctree:: :maxdepth: 4 - PyCTBN.PyCTBN - examples + PyCTBN + example + setup diff --git a/docs-out/_build/html/example.html b/docs-out/_build/html/example.html new file mode 100644 index 0000000..926439d --- /dev/null +++ b/docs-out/_build/html/example.html @@ -0,0 +1,179 @@ + + + + + + + + + + + example module — PyCTBN 2.0 documentation + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    + +
    + + + +
    +
    +
    +
    +
    + +
    +
    + + + + + + + + + + + + +
    + +
    + +
    +
    +

    example module¶

    +
    + + +
    +
    + + +
    + +
    +

    + © Copyright 2021, Bregoli Alessandro, Martini Filippo, Moretti Luca. +

    +
    + + Built with Sphinx using a theme provided by Porão do Juca. + +
    +
    +
    + + + + + + + + + + + + + + + + + + + + + \ No newline at end of file diff --git a/docs-out/_build/html/genindex.html b/docs-out/_build/html/genindex.html index bd2996c..763383b 100644 --- a/docs-out/_build/html/genindex.html +++ b/docs-out/_build/html/genindex.html @@ -134,11 +134,14 @@ | S | T | V + | W

    A

    +

    E

    @@ -337,6 +352,10 @@

    G

    +
  • graph() (PyCTBN.PyCTBN.structure_graph.network_generator.NetworkGenerator property) +
    		•
    @@ -414,6 +435,10 @@

    J

    + +

    N

    @@ -699,6 +748,13 @@ +
  • + PyCTBN.PyCTBN.structure_graph.network_generator + +
  • @@ -734,6 +790,13 @@
    • +
  • + PyCTBN.PyCTBN.structure_graph.trajectory_generator + +
  • @@ -741,6 +804,13 @@
    • +
  • + PyCTBN.PyCTBN.utility.abstract_exporter + +
  • @@ -757,6 +827,13 @@
    • +
  • + PyCTBN.PyCTBN.utility.json_exporter + +
  • @@ -848,6 +925,13 @@
    • +
  • + PyCTBN.tests.structure_graph.test_networkgenerator + +
  • @@ -883,6 +967,13 @@
    • +
  • + PyCTBN.tests.structure_graph.test_trajectorygenerator + +
  • @@ -973,6 +1064,8 @@
  • (PyCTBN.tests.structure_graph.test_structure.TestStructure class method)
  • (PyCTBN.tests.structure_graph.test_trajectory.TestTrajectory class method) +
    • +
  • (PyCTBN.tests.structure_graph.test_trajectorygenerator.TestTrajectoryGenerator class method)
  • (PyCTBN.tests.utility.test_json_importer.TestJsonImporter class method)
    • @@ -1088,8 +1181,16 @@
  • test_filter_cims_with_mask() (PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims method)
  • test_find() (PyCTBN.tests.utility.test_cache.TestCache method) +
    • +
  • test_generate_cims() (PyCTBN.tests.structure_graph.test_networkgenerator.TestNetworkGenerator method) +
    • +
  • test_generate_graph() (PyCTBN.tests.structure_graph.test_networkgenerator.TestNetworkGenerator method)
  • test_generate_possible_sub_sets_of_size() (PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator method) +
    • +
  • test_generated_trajectory() (PyCTBN.tests.structure_graph.test_trajectorygenerator.TestTrajectoryGenerator method) +
    • +
  • test_generated_trajectory_max_tr() (PyCTBN.tests.structure_graph.test_trajectorygenerator.TestTrajectoryGenerator method)
  • test_get_node_id() (PyCTBN.tests.structure_graph.test_structure.TestStructure method)
    • @@ -1133,6 +1234,8 @@
  • (PyCTBN.tests.structure_graph.test_structure.TestStructure method)
  • (PyCTBN.tests.structure_graph.test_trajectory.TestTrajectory method) +
    • +
  • (PyCTBN.tests.structure_graph.test_trajectorygenerator.TestTrajectoryGenerator method)
  • (PyCTBN.tests.utility.test_cache.TestCache method)
    • @@ -1146,6 +1249,8 @@
  • test_init_not_filled_dataframse() (PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath method)
  • test_init_not_initialized_importer() (PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath method) +
    • +
  • test_multi_trajectory() (PyCTBN.tests.structure_graph.test_trajectorygenerator.TestTrajectoryGenerator method)
  • test_normalize_trajectories() (PyCTBN.tests.utility.test_json_importer.TestJsonImporter method)
    • @@ -1210,6 +1315,8 @@
  • TestHillClimbingSearch (class in PyCTBN.tests.optimizers.test_hill_climbing_search)
  • TestJsonImporter (class in PyCTBN.tests.utility.test_json_importer) +
    • +
  • TestNetworkGenerator (class in PyCTBN.tests.structure_graph.test_networkgenerator)
  • TestNetworkGraph (class in PyCTBN.tests.structure_graph.test_networkgraph)
    • @@ -1232,6 +1339,8 @@
  • TestTabuSearch (class in PyCTBN.tests.optimizers.test_tabu_search)
  • TestTrajectory (class in PyCTBN.tests.structure_graph.test_trajectory) +
    • +
  • TestTrajectoryGenerator (class in PyCTBN.tests.structure_graph.test_trajectorygenerator)
  • time_filtering() (PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph property)
    • @@ -1248,6 +1357,8 @@
  • Trajectory (class in PyCTBN.PyCTBN.structure_graph.trajectory)
  • trajectory() (PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory property) +
    • +
  • TrajectoryGenerator (class in PyCTBN.PyCTBN.structure_graph.trajectory_generator)
  • transition_filtering() (PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph property)
    • @@ -1260,12 +1371,24 @@
    +
    + +

    W

    + +
    diff --git a/docs-out/_build/html/index.html b/docs-out/_build/html/index.html index 996979e..910075a 100644 --- a/docs-out/_build/html/index.html +++ b/docs-out/_build/html/index.html @@ -142,18 +142,22 @@
  • PyCTBN.PyCTBN.structure_graph package
  • PyCTBN.PyCTBN.utility package
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\ No newline at end of file diff --git a/docs/PyCTBN.PyCTBN.estimators.html b/docs/PyCTBN.PyCTBN.estimators.html index 1644fa4..744c567 100644 --- a/docs/PyCTBN.PyCTBN.estimators.html +++ b/docs/PyCTBN.PyCTBN.estimators.html @@ -19,10 +19,6 @@ - - - - @@ -127,13 +123,13 @@

    PyCTBN.PyCTBN.estimators.fam_score_calculator module¶

    -
    -class PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator¶
    +
    +class PyCTBN.PyCTBN.estimators.fam_score_calculator.FamScoreCalculator¶

    Bases: object

    Has the task of calculating the FamScore of a node by using a Bayesian score function

    -
    -get_fam_score(cims: numpy.array, tau_xu: float = 0.1, alpha_xu: float = 1)¶
    +
    +get_fam_score(cims: numpy.array, tau_xu: float = 0.1, alpha_xu: float = 1)¶

    Calculate the FamScore value of the node

    Parameters
    @@ -153,8 +149,8 @@
    -
    -marginal_likelihood_q(cims: numpy.array, tau_xu: float = 0.1, alpha_xu: float = 1)¶
    +
    +marginal_likelihood_q(cims: numpy.array, tau_xu: float = 0.1, alpha_xu: float = 1)¶

    Calculate the value of the marginal likelihood over q of the node identified by the label node_id

    Parameters
    @@ -174,8 +170,8 @@
    -
    -marginal_likelihood_theta(cims: PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix, alpha_xu: float, alpha_xxu: float)¶
    +
    +marginal_likelihood_theta(cims: PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix, alpha_xu: float, alpha_xxu: float)¶

    Calculate the FamScore value of the node identified by the label node_id

    Parameters
    @@ -195,8 +191,8 @@
    -
    -single_cim_xu_marginal_likelihood_q(M_xu_suff_stats: float, T_xu_suff_stats: float, tau_xu: float = 0.1, alpha_xu: float = 1)¶
    +
    +single_cim_xu_marginal_likelihood_q(M_xu_suff_stats: float, T_xu_suff_stats: float, tau_xu: float = 0.1, alpha_xu: float = 1)¶

    Calculate the marginal likelihood on q of the node when assumes a specif value and a specif parents’s assignment

    @@ -219,8 +215,8 @@ and a specif parents’s assignment

    -
    -single_cim_xu_marginal_likelihood_theta(index: int, cim: PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix, alpha_xu: float, alpha_xxu: float)¶
    +
    +single_cim_xu_marginal_likelihood_theta(index: int, cim: PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix, alpha_xu: float, alpha_xxu: float)¶

    Calculate the marginal likelihood on q of the node when assumes a specif value and a specif parents’s assignment

    @@ -241,8 +237,8 @@ and a specif parents’s assignment

    -
    -single_internal_cim_xxu_marginal_likelihood_theta(M_xxu_suff_stats: float, alpha_xxu: float = 1)¶
    +
    +single_internal_cim_xxu_marginal_likelihood_theta(M_xxu_suff_stats: float, alpha_xxu: float = 1)¶

    Calculate the second part of the marginal likelihood over theta formula

    Parameters
    @@ -261,8 +257,8 @@ and a specif parents’s assignment

    -
    -variable_cim_xu_marginal_likelihood_q(cim: PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix, tau_xu: float = 0.1, alpha_xu: float = 1)¶
    +
    +variable_cim_xu_marginal_likelihood_q(cim: PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix, tau_xu: float = 0.1, alpha_xu: float = 1)¶

    Calculate the value of the marginal likelihood over q given a cim

    Parameters
    @@ -282,8 +278,8 @@ and a specif parents’s assignment

    -
    -variable_cim_xu_marginal_likelihood_theta(cim: PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix, alpha_xu: float, alpha_xxu: float)¶
    +
    +variable_cim_xu_marginal_likelihood_theta(cim: PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix, alpha_xu: float, alpha_xxu: float)¶

    Calculate the value of the marginal likelihood over theta given a cim

    Parameters
    @@ -308,8 +304,8 @@ and a specif parents’s assignment

    PyCTBN.PyCTBN.estimators.parameters_estimator module¶

    -
    -class PyCTBN.PyCTBN.estimators.parameters_estimator.ParametersEstimator(trajectories: PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory, net_graph: PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph)¶
    +
    +class PyCTBN.PyCTBN.estimators.parameters_estimator.ParametersEstimator(trajectories: PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory, net_graph: PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph)¶

    Bases: object

    Has the task of computing the cims of particular node given the trajectories and the net structure in the graph _net_graph.

    @@ -325,8 +321,8 @@ in the graph _net_g
    -
    -compute_parameters_for_node(node_id: str) → PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims¶
    +
    +compute_parameters_for_node(node_id: str) → PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims¶

    Compute the CIMS of the node identified by the label node_id.

    Parameters
    @@ -342,8 +338,8 @@ in the graph _net_g
    -
    -static compute_state_res_time_for_node(times: numpy.ndarray, trajectory: numpy.ndarray, cols_filter: numpy.ndarray, scalar_indexes_struct: numpy.ndarray, T: numpy.ndarray) → None¶
    +
    +static compute_state_res_time_for_node(times: numpy.ndarray, trajectory: numpy.ndarray, cols_filter: numpy.ndarray, scalar_indexes_struct: numpy.ndarray, T: numpy.ndarray) → None¶

    Compute the state residence times for a node and fill the matrix T with the results

    Parameters
    @@ -360,8 +356,8 @@ in the graph _net_g
    -
    -static compute_state_transitions_for_a_node(node_indx: int, trajectory: numpy.ndarray, cols_filter: numpy.ndarray, scalar_indexing: numpy.ndarray, M: numpy.ndarray) → None¶
    +
    +static compute_state_transitions_for_a_node(node_indx: int, trajectory: numpy.ndarray, cols_filter: numpy.ndarray, scalar_indexing: numpy.ndarray, M: numpy.ndarray) → None¶

    Compute the state residence times for a node and fill the matrices M with the results.

    Parameters
    @@ -377,8 +373,8 @@ in the graph _net_g
    -
    -fast_init(node_id: str) → None¶
    +
    +fast_init(node_id: str) → None¶

    Initializes all the necessary structures for the parameters estimation for the node node_id.

    Parameters
    @@ -393,8 +389,8 @@ in the graph _net_g

    PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator module¶

    -
    -class PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator(sample_path: PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath, exp_test_alfa: float, chi_test_alfa: float, known_edges: List = [], thumb_threshold: int = 25)¶
    +
    +class PyCTBN.PyCTBN.estimators.structure_constraint_based_estimator.StructureConstraintBasedEstimator(sample_path: PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath, exp_test_alfa: float, chi_test_alfa: float, known_edges: List = [], thumb_threshold: int = 25)¶

    Bases: PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator

    Has the task of estimating the network structure given the trajectories in samplepath by using a constraint-based approach.

    @@ -424,8 +420,8 @@ in the graph _net_g
    -
    -complete_test(test_parent: str, test_child: str, parent_set: List, child_states_numb: int, tot_vars_count: int, parent_indx, child_indx) → bool¶
    +
    +complete_test(test_parent: str, test_child: str, parent_set: List, child_states_numb: int, tot_vars_count: int, parent_indx, child_indx) → bool¶

    Performs a complete independence test on the directed graphs G1 = {test_child U parent_set} G2 = {G1 U test_parent} (added as an additional parent of the test_child). Generates all the necessary structures and datas to perform the tests.

    @@ -449,8 +445,8 @@ Generates all the necessary structures and datas to perform the tests.

    -
    -compute_thumb_value(parent_val, child_val, parent_set_vals)¶
    +
    +compute_thumb_value(parent_val, child_val, parent_set_vals)¶

    Compute the value to test against the thumb_threshold.

    Parameters
    @@ -470,10 +466,8 @@ Generates all the necessary structures and datas to perform the tests.

    -
    ctpc_algorithm(disable_multiprocessing: bool = False, processes_number: int = None)¶
    -

    Compute the CTPC algorithm over the entire net.

    Parameters
    @@ -488,11 +482,9 @@ Generates all the necessary structures and datas to perform the tests.

    -
    estimate_structure(disable_multiprocessing: bool = False, processes_number: int = None)¶

    Compute the constraint-based algorithm to find the optimal structure

    -
    Parameters
      @@ -506,8 +498,8 @@ Generates all the necessary structures and datas to perform the tests.

    -
    -independence_test(child_states_numb: int, cim1: PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix, cim2: PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix, thumb_value: float, parent_indx, child_indx) → bool¶
    +
    +independence_test(child_states_numb: int, cim1: PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix, cim2: PyCTBN.PyCTBN.structure_graph.conditional_intensity_matrix.ConditionalIntensityMatrix, thumb_value: float, parent_indx, child_indx) → bool¶

    Compute the actual independence test using two cims. It is performed first the exponential test and if the null hypothesis is not rejected, it is performed also the chi_test.

    @@ -529,8 +521,8 @@ it is performed also the chi_test.

    -
    -one_iteration_of_CTPC_algorithm(var_id: str, tot_vars_count: int) → List¶
    +
    +one_iteration_of_CTPC_algorithm(var_id: str, tot_vars_count: int) → List¶

    Performs an iteration of the CTPC algorithm using the node var_id as test_child.

    Parameters
    @@ -545,8 +537,8 @@ it is performed also the chi_test.

    PyCTBN.PyCTBN.estimators.structure_estimator module¶

    -
    -class PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator(sample_path: PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath, known_edges: Optional[List] = None)¶
    +
    +class PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator(sample_path: PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath, known_edges: List = None)¶

    Bases: object

    Has the task of estimating the network structure given the trajectories in samplepath.

    @@ -570,8 +562,8 @@ it is performed also the chi_test.

    -
    -adjacency_matrix() → numpy.ndarray¶
    +
    +adjacency_matrix() → numpy.ndarray¶

    Converts the estimated structure _complete_graph to a boolean adjacency matrix representation.

    Returns
    @@ -584,8 +576,8 @@ it is performed also the chi_test.

    -
    -static build_complete_graph(node_ids: List) → networkx.classes.digraph.DiGraph¶
    +
    +static build_complete_graph(node_ids: List) → networkx.classes.digraph.DiGraph¶

    Builds a complete directed graph (no self loops) given the nodes labels in the list node_ids:

    Parameters
    @@ -601,8 +593,8 @@ it is performed also the chi_test.

    -
    -build_removable_edges_matrix(known_edges: List)¶
    +
    +build_removable_edges_matrix(known_edges: List)¶

    Builds a boolean matrix who shows if a edge could be removed or not, based on prior knowledge given:

    Parameters
    @@ -618,8 +610,8 @@ it is performed also the chi_test.

    -
    -abstract estimate_structure() → List¶
    +
    +abstract estimate_structure() → List¶

    Abstract method to estimate the structure

    Returns
    @@ -632,8 +624,8 @@ it is performed also the chi_test.

    -
    -static generate_possible_sub_sets_of_size(u: List, size: int, parent_label: str)¶
    +
    +static generate_possible_sub_sets_of_size(u: List, size: int, parent_label: str)¶

    Creates a list containing all possible subsets of the list u of size size, that do not contains a the node identified by parent_label.

    @@ -654,11 +646,9 @@ that do not contains a the node identified by -
    save_plot_estimated_structure_graph(file_path: str) → None¶

    Plot the estimated structure in a graphical model style, use .png extension.

    -
    Parameters

    file_path – path to save the file to

    @@ -670,8 +660,8 @@ that do not contains a the node identified by -
    -save_results(file_path: str) → None¶
    +
    +save_results(file_path: str) → None¶

    Save the estimated Structure to a .json file in file_path.

    Parameters
    @@ -681,8 +671,8 @@ that do not contains a the node identified by -
    -spurious_edges() → List¶
    +
    +spurious_edges() → List¶
    Return the spurious edges present in the estimated structure, if a prior net structure is present in

    _sample_path.structure.

    @@ -703,8 +693,8 @@ that do not contains a the node identified by

    PyCTBN.PyCTBN.estimators.structure_score_based_estimator module¶

    -
    -class PyCTBN.PyCTBN.estimators.structure_score_based_estimator.StructureScoreBasedEstimator(sample_path: PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath, tau_xu: int = 0.1, alpha_xu: int = 1, known_edges: List = [])¶
    +
    +class PyCTBN.PyCTBN.estimators.structure_score_based_estimator.StructureScoreBasedEstimator(sample_path: PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath, tau_xu: int = 0.1, alpha_xu: int = 1, known_edges: List = [])¶

    Bases: PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator

    Has the task of estimating the network structure given the trajectories in samplepath by using a score based approach and differt kinds of optimization algorithms.

    @@ -719,8 +709,8 @@ using a score based approach and differt kinds of optimization algorithms.

    -
    -estimate_parents(node_id: str, max_parents: Optional[int] = None, iterations_number: int = 40, patience: int = 10, tabu_length: Optional[int] = None, tabu_rules_duration: int = 5, optimizer: str = 'hill')¶
    +
    +estimate_parents(node_id: str, max_parents: int = None, iterations_number: int = 40, patience: int = 10, tabu_length: int = None, tabu_rules_duration: int = 5, optimizer: str = 'hill')¶

    Use the FamScore of a node in order to find the best parent nodes

    Parameters
    @@ -744,10 +734,8 @@ using a score based approach and differt kinds of optimization algorithms.

    -
    estimate_structure(max_parents: int = None, iterations_number: int = 40, patience: int = None, tabu_length: int = None, tabu_rules_duration: int = None, optimizer: str = 'tabu', disable_multiprocessing: bool = False, processes_number: int = None)¶
    -

    Compute the score-based algorithm to find the optimal structure

    Parameters
    @@ -768,8 +756,8 @@ using a score based approach and differt kinds of optimization algorithms.

    -
    -get_score_from_graph(graph: PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph, node_id: str)¶
    +
    +get_score_from_graph(graph: PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph, node_id: str)¶

    Get the FamScore of a node

    Parameters
    @@ -832,9 +820,6 @@ using a score based approach and differt kinds of optimization algorithms.

    FILE_SUFFIX:'.html', HAS_SOURCE: true }; - - + diff --git a/docs/PyCTBN.PyCTBN.html b/docs/PyCTBN.PyCTBN.html index 17c42b8..29ef30a 100644 --- a/docs/PyCTBN.PyCTBN.html +++ b/docs/PyCTBN.PyCTBN.html @@ -19,10 +19,6 @@ - - - - @@ -212,9 +208,6 @@ FILE_SUFFIX:'.html', HAS_SOURCE: true }; - - + diff --git a/docs/PyCTBN.PyCTBN.optimizers.html b/docs/PyCTBN.PyCTBN.optimizers.html index 94e6d69..58423f2 100644 --- a/docs/PyCTBN.PyCTBN.optimizers.html +++ b/docs/PyCTBN.PyCTBN.optimizers.html @@ -19,10 +19,6 @@ - - - - @@ -127,8 +123,8 @@

    PyCTBN.PyCTBN.optimizers.constraint_based_optimizer module¶

    -
    -class PyCTBN.PyCTBN.optimizers.constraint_based_optimizer.ConstraintBasedOptimizer(node_id: str, structure_estimator: PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator, tot_vars_count: int)¶
    +
    +class PyCTBN.PyCTBN.optimizers.constraint_based_optimizer.ConstraintBasedOptimizer(node_id: str, structure_estimator: PyCTBN.PyCTBN.estimators.structure_estimator.StructureEstimator, tot_vars_count: int)¶

    Bases: PyCTBN.PyCTBN.optimizers.optimizer.Optimizer

    Optimizer class that implement a CTPC Algorithm

    @@ -141,8 +137,8 @@
    -
    -optimize_structure()¶
    +
    +optimize_structure()¶

    Compute Optimization process for a structure_estimator by using a CTPC Algorithm

    Returns
    @@ -160,8 +156,8 @@
    -
    +
    +

    PyCTBN.PyCTBN.structure_graph.network_generator module¶

    -
    -class PyCTBN.PyCTBN.structure_graph.network_generator.NetworkGenerator(labels, vals)¶
    +
    +class PyCTBN.PyCTBN.structure_graph.network_generator.NetworkGenerator(labels, vals)¶

    Bases: object

    Provides the methods to generate a network graph and the CIMs related to it Items in _labels, _vals and _indxs are related, and therefore respect the same order

    @@ -187,19 +183,19 @@ Items in _labels, _vals and _indxs are related, and therefore respect the same o
    -
    -
    -property cims: dict¶
    +
    +
    +property cims¶
    -
    -
    -property dyn_str: list¶
    +
    +
    +property dyn_str¶
    -
    -generate_cims(min_val, max_val)¶
    +
    +generate_cims(min_val, max_val)¶
    For each node, generate the corresponding SetOfCims. The objective is to group the CIMs

    (actually generated by private method __generate_cim) according to parents possibles states of every node. This method must obviously be executed after the graph has been generated.

    @@ -216,8 +212,8 @@ This method must obviously be executed after the graph has been generated.

    -
    -generate_graph(density, fixed: bool = False)¶
    +
    +generate_graph(density, fixed: bool = False)¶
    Generate the edges according to specified density, and then instantiate the NetworkGraph object

    to represent the network

    @@ -232,14 +228,14 @@ This method must obviously be executed after the graph has been generated.

    -
    -
    -property graph: PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph¶
    +
    +
    +property graph¶
    -
    -
    -property variables: list¶
    +
    +
    +property variables¶
    @@ -248,8 +244,8 @@ This method must obviously be executed after the graph has been generated.

    PyCTBN.PyCTBN.structure_graph.network_graph module¶

    -
    -class PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph(graph_struct: PyCTBN.PyCTBN.structure_graph.structure.Structure)¶
    +
    +class PyCTBN.PyCTBN.structure_graph.network_graph.NetworkGraph(graph_struct: PyCTBN.PyCTBN.structure_graph.structure.Structure)¶

    Bases: object

    Abstracts the infos contained in the Structure class in the form of a directed graph. Has the task of creating all the necessary filtering and indexing structures for parameters estimation

    @@ -282,8 +278,8 @@ from one state to another

    -
    -add_edges(list_of_edges: List) → None¶
    +
    +add_edges(list_of_edges: List) → None¶

    Add the edges to the _graph contained in the list list_of_edges.

    Parameters
    @@ -293,8 +289,8 @@ from one state to another

    -
    -add_nodes(list_of_nodes: List) → None¶
    +
    +add_nodes(list_of_nodes: List) → None¶

    Adds the nodes to the _graph contained in the list of nodes list_of_nodes. Sets all the properties that identify a nodes (index, positional index, cardinality)

    @@ -305,8 +301,8 @@ Sets all the properties that identify a nodes (index, positional index, cardinal
    -
    -static build_p_comb_structure_for_a_node(parents_values: List) → numpy.ndarray¶
    +
    +static build_p_comb_structure_for_a_node(parents_values: List) → numpy.ndarray¶

    Builds the combinatorial structure that contains the combinations of all the values contained in parents_values.

    @@ -323,8 +319,8 @@ Sets all the properties that identify a nodes (index, positional index, cardinal
    -
    -static build_time_columns_filtering_for_a_node(node_indx: int, p_indxs: List) → numpy.ndarray¶
    +
    +static build_time_columns_filtering_for_a_node(node_indx: int, p_indxs: List) → numpy.ndarray¶

    Builds the necessary structure to filter the desired columns indicated by node_indx and p_indxs in the dataset. This structute will be used in the computation of the state res times. @@ -337,8 +333,8 @@ This structute will be used in the computation of the state res times.

    -
    -static build_time_scalar_indexing_structure_for_a_node(node_states: int, parents_vals: List) → numpy.ndarray¶
    +
    +static build_time_scalar_indexing_structure_for_a_node(node_states: int, parents_vals: List) → numpy.ndarray¶

    Builds an indexing structure for the computation of state residence times values.

    Parameters
    @@ -357,8 +353,8 @@ This structute will be used in the computation of the state res times.
    -
    -static build_transition_filtering_for_a_node(node_indx: int, p_indxs: List, nodes_number: int) → numpy.ndarray¶
    +
    +static build_transition_filtering_for_a_node(node_indx: int, p_indxs: List, nodes_number: int) → numpy.ndarray¶

    Builds the necessary structure to filter the desired columns indicated by node_indx and p_indxs in the dataset. This structure will be used in the computation of the state transitions values. @@ -373,8 +369,8 @@ This structure will be used in the computation of the state transitions values.

    -
    -static build_transition_scalar_indexing_structure_for_a_node(node_states_number: int, parents_vals: List) → numpy.ndarray¶
    +
    +static build_transition_scalar_indexing_structure_for_a_node(node_states_number: int, parents_vals: List) → numpy.ndarray¶

    Builds an indexing structure for the computation of state transitions values.

    Parameters
    @@ -393,19 +389,19 @@ This structure will be used in the computation of the state transitions values.
    -
    -clear_indexing_filtering_structures() → None¶
    +
    +clear_indexing_filtering_structures() → None¶

    Initialize all the filtering/indexing structures.

    -
    -
    -property edges: List¶
    +
    +
    +property edges¶
    -
    -fast_init(node_id: str) → None¶
    +
    +fast_init(node_id: str) → None¶

    Initializes all the necessary structures for parameters estimation of the node identified by the label node_id

    @@ -416,13 +412,13 @@ node_id

    -
    -get_node_indx(node_id) → int¶
    +
    +get_node_indx(node_id) → int¶
    -
    -get_ordered_by_indx_set_of_parents(node: str) → Tuple¶
    +
    +get_ordered_by_indx_set_of_parents(node: str) → Tuple¶

    Builds the aggregated structure that holds all the infos relative to the parent set of the node, namely (parents_labels, parents_indexes, parents_cardinalities).

    @@ -439,8 +435,8 @@ node_id

    -
    -get_parents_by_id(node_id) → List¶
    +
    +get_parents_by_id(node_id) → List¶

    Returns a list of labels of the parents of the node node_id

    Parameters
    @@ -456,18 +452,18 @@ node_id

    -
    -get_positional_node_indx(node_id) → int¶
    +
    +get_positional_node_indx(node_id) → int¶
    -
    -get_states_number(node_id) → int¶
    +
    +get_states_number(node_id) → int¶
    -
    -has_edge(edge: tuple) → bool¶
    +
    +has_edge(edge: tuple) → bool¶

    Check if the graph contains a specific edge

    Parameters:

    edge: a tuple that rappresents the edge

    @@ -477,29 +473,29 @@ node_id

    -
    -
    -property nodes: List¶
    +
    +
    +property nodes¶
    -
    -
    -property nodes_indexes: numpy.ndarray¶
    +
    +
    +property nodes_indexes¶
    -
    -
    -property nodes_values: numpy.ndarray¶
    +
    +
    +property nodes_values¶
    -
    -
    -property p_combs: numpy.ndarray¶
    +
    +
    +property p_combs¶
    -
    -remove_edges(list_of_edges: List) → None¶
    +
    +remove_edges(list_of_edges: List) → None¶

    Remove the edges to the graph contained in the list list_of_edges.

    Parameters
    @@ -509,30 +505,30 @@ node_id

    -
    -remove_node(node_id: str) → None¶
    +
    +remove_node(node_id: str) → None¶

    Remove the node node_id from all the class members. Initialize all the filtering/indexing structures.

    -
    -
    -property time_filtering: numpy.ndarray¶
    +
    +
    +property time_filtering¶
    -
    -
    -property time_scalar_indexing_strucure: numpy.ndarray¶
    +
    +
    +property time_scalar_indexing_strucure¶
    -
    -
    -property transition_filtering: numpy.ndarray¶
    +
    +
    +property transition_filtering¶
    -
    -
    -property transition_scalar_indexing_structure: numpy.ndarray¶
    +
    +
    +property transition_scalar_indexing_structure¶
    @@ -541,8 +537,8 @@ Initialize all the filtering/indexing structures.

    PyCTBN.PyCTBN.structure_graph.sample_path module¶

    -
    -class PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath(importer: PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter)¶
    +
    +class PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath(importer: PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter)¶

    Bases: object

    Aggregates all the informations about the trajectories, the real structure of the sampled net and variables cardinalites. Has the task of creating the objects Trajectory and Structure that will @@ -562,41 +558,41 @@ contain the mentioned data.

    -
    -build_structure() → None¶
    +
    +build_structure() → None¶

    Builds the Structure object that aggregates all the infos about the net.

    -
    -build_trajectories() → None¶
    +
    +build_trajectories() → None¶

    Builds the Trajectory object that will contain all the trajectories. Clears all the unused dataframes in _importer Object

    -
    -clear_memory()¶
    +
    +clear_memory()¶
    -
    -
    -property has_prior_net_structure: bool¶
    +
    +
    +property has_prior_net_structure¶
    -
    -
    -property structure: PyCTBN.PyCTBN.structure_graph.structure.Structure¶
    +
    +
    +property structure¶
    -
    -
    -property total_variables_count: int¶
    +
    +
    +property total_variables_count¶
    -
    -
    -property trajectories: PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory¶
    +
    +
    +property trajectories¶
    @@ -605,8 +601,8 @@ Clears all the unused dataframes in <

    PyCTBN.PyCTBN.structure_graph.set_of_cims module¶

    -
    -class PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims(node_id: str, parents_states_number: List, node_states_number: int, p_combs: numpy.ndarray, cims: Optional[numpy.ndarray] = None)¶
    +
    +class PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims(node_id: str, parents_states_number: List, node_states_number: int, p_combs: numpy.ndarray, cims: numpy.ndarray = None)¶

    Bases: object

    Aggregates all the CIMS of the node identified by the label _node_id.

    @@ -628,14 +624,14 @@ Clears all the unused dataframes in <

    the cims of the node

    -
    -
    -property actual_cims: numpy.ndarray¶
    +
    +
    +property actual_cims¶
    -
    -build_cims(state_res_times: numpy.ndarray, transition_matrices: numpy.ndarray) → None¶
    +
    +build_cims(state_res_times: numpy.ndarray, transition_matrices: numpy.ndarray) → None¶

    Build the ConditionalIntensityMatrix objects given the state residence times and transitions matrices. Compute the cim coefficients.The class member _actual_cims will contain the computed cims.

    @@ -649,14 +645,14 @@ Compute the cim coefficients.The class member -
    -build_times_and_transitions_structures() → None¶
    +
    +build_times_and_transitions_structures() → None¶

    Initializes at the correct dimensions the state residence times matrix and the state transition matrices.

    -
    -filter_cims_with_mask(mask_arr: numpy.ndarray, comb: List) → numpy.ndarray¶
    +
    +filter_cims_with_mask(mask_arr: numpy.ndarray, comb: List) → numpy.ndarray¶

    Filter the cims contained in the array _actual_cims given the boolean mask mask_arr and the index comb.

    @@ -676,13 +672,13 @@ Compute the cim coefficients.The class member -
    -get_cims_number()¶
    +
    +get_cims_number()¶
    -
    -
    -property p_combs: numpy.ndarray¶
    +
    +
    +property p_combs¶
    @@ -691,8 +687,8 @@ Compute the cim coefficients.The class member

    PyCTBN.PyCTBN.structure_graph.structure module¶

    -
    -class PyCTBN.PyCTBN.structure_graph.structure.Structure(nodes_labels_list: List, nodes_indexes_arr: numpy.ndarray, nodes_vals_arr: numpy.ndarray, edges_list: List, total_variables_number: int)¶
    +
    +class PyCTBN.PyCTBN.structure_graph.structure.Structure(nodes_labels_list: List, nodes_indexes_arr: numpy.ndarray, nodes_vals_arr: numpy.ndarray, edges_list: List, total_variables_number: int)¶

    Bases: object

    Contains all the infos about the network structure(nodes labels, nodes caridinalites, edges, indexes)

    @@ -707,28 +703,28 @@ Compute the cim coefficients.The class member -
    -add_edge(edge: tuple)¶
    +
    +add_edge(edge: tuple)¶
    -
    -clean_structure_edges()¶
    +
    +clean_structure_edges()¶
    -
    -contains_edge(edge: tuple) → bool¶
    +
    +contains_edge(edge: tuple) → bool¶
    -
    -
    -property edges: List¶
    +
    +
    +property edges¶
    -
    -get_node_id(node_indx: int) → str¶
    +
    +get_node_id(node_indx: int) → str¶

    Given the node_index returns the node label.

    Parameters
    @@ -744,8 +740,8 @@ Compute the cim coefficients.The class member -
    -get_node_indx(node_id: str) → int¶
    +
    +get_node_indx(node_id: str) → int¶

    Given the node_index returns the node label.

    Parameters
    @@ -761,13 +757,13 @@ Compute the cim coefficients.The class member -
    -get_positional_node_indx(node_id: str) → int¶
    +
    +get_positional_node_indx(node_id: str) → int¶
    -
    -get_states_number(node: str) → int¶
    +
    +get_states_number(node: str) → int¶

    Given the node label node returns the cardinality of the node.

    Parameters
    @@ -782,36 +778,36 @@ Compute the cim coefficients.The class member -
    -property nodes_indexes: numpy.ndarray¶
    +
    +
    +property nodes_indexes¶
    -
    -
    -property nodes_labels: List¶
    +
    +
    +property nodes_labels¶
    -
    -
    -property nodes_values: numpy.ndarray¶
    +
    +
    +property nodes_values¶
    -
    -remove_edge(edge: tuple)¶
    +
    +remove_edge(edge: tuple)¶
    -
    -remove_node(node_id: str) → None¶
    +
    +remove_node(node_id: str) → None¶

    Remove the node node_id from all the class members. The class member _total_variables_number since it refers to the total number of variables in the dataset.

    -
    -
    -property total_variables_number: int¶
    +
    +
    +property total_variables_number¶
    @@ -820,8 +816,8 @@ The class member _t

    PyCTBN.PyCTBN.structure_graph.trajectory module¶

    -
    -class PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory(list_of_columns: List, original_cols_number: int)¶
    +
    +class PyCTBN.PyCTBN.structure_graph.trajectory.Trajectory(list_of_columns: List, original_cols_number: int)¶

    Bases: object

    Abstracts the infos about a complete set of trajectories, represented as a numpy array of doubles (the time deltas) and a numpy matrix of ints (the changes of states).

    @@ -839,32 +835,101 @@ The class member _t

    the array containing the time deltas

    -
    -
    -property complete_trajectory: numpy.ndarray¶
    +
    +
    +property complete_trajectory¶
    -
    -size()¶
    +
    +size()¶
    -
    -
    -property times¶
    +
    +
    +property times¶
    -
    -
    -property trajectory: numpy.ndarray¶
    +
    +
    +property trajectory¶
    +
    +
    +

    PyCTBN.PyCTBN.structure_graph.trajectory_generator module¶

    +
    +
    +class PyCTBN.PyCTBN.structure_graph.trajectory_generator.TrajectoryGenerator(importer: PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter = None, variables: pandas.core.frame.DataFrame = None, dyn_str: pandas.core.frame.DataFrame = None, dyn_cims: dict = None)¶
    +

    Bases: object

    +

    Provides the methods to generate a trajectory basing on the network defined +in the importer.

    +
    +
    Parameters
    +
      +

    • _importer (AbstractImporter) – the Importer object which contains the imported and processed data

      • +

    • _vnames (List) – List of the variables labels that belong to the network

      • +

    • _parents (Dict) – It contains, for each variable label (the key), the list of related parents labels

      • +

    • _cims (Dict) – It contains, for each variable label (the key), the SetOfCims object related to it

      • +

    • _generated_trajectory (pandas.DataFrame) – Result of the execution of CTBN_Sample, contains the output trajectory

      • +
    +
    +
    +
    +
    +CTBN_Sample(t_end=- 1, max_tr=- 1)¶
    +
    +
    This method implements the generation of a trajectory, basing on the network structure and

    on the coefficients defined in the CIMs. +The variables are initialized with value 0, and the method takes care of adding the +conventional last row made up of -1.

    +
    +
    +
    +
    Parameters
    +
      +

    • t_end (float) – If defined, the sampling ends when end time is reached

      • +

    • max_tr (int) – Parameter taken in consideration in case that t_end isn’t defined. It specifies the number of transitions to execute

      • +
    +
    +
    +
    + +
    +
    +multi_trajectory(t_ends: list = None, max_trs: list = None)¶
    +

    Generate n trajectories in parallel, where n is the number of items in +t_ends, if defined, or the number of items in max_trs otherwise

    +
    +
    Parameters
    +
      +

    • t_ends (list) – List of t_end values for the trajectories that will be generated

      • +

    • max_trs (list) – List of max_tr values for the trajectories that will be generated

      • +
    +
    +
    +
    + +
    +
    +worker(t_end, max_tr, trajectories)¶
    +

    Single process that will be executed in parallel in order to generate one trajectory.

    +
    +
    Parameters
    +
      +

    • t_end (float) – If defined, the sampling ends when end time is reached

      • +

    • max_tr (int) – Parameter taken in consideration in case that t_end isn’t defined. It specifies the number of transitions to execute

      • +

    • trajectories (list) – Shared list that contains to which the generated trajectory is added

      • +
    +
    +
    +
    + +
    -

    Module contents¶

    @@ -906,9 +971,6 @@ The class member _t FILE_SUFFIX:'.html', HAS_SOURCE: true }; - - + diff --git a/docs/PyCTBN.PyCTBN.utility.html b/docs/PyCTBN.PyCTBN.utility.html index 05eaa8e..fe87d56 100644 --- a/docs/PyCTBN.PyCTBN.utility.html +++ b/docs/PyCTBN.PyCTBN.utility.html @@ -19,10 +19,6 @@ - - - - @@ -123,14 +119,58 @@

    PyCTBN.PyCTBN.utility package¶

    Submodules¶

    +
    +
    +

    PyCTBN.PyCTBN.utility.abstract_exporter module¶

    +
    +
    +class PyCTBN.PyCTBN.utility.abstract_exporter.AbstractExporter(variables: pandas.core.frame.DataFrame = None, dyn_str: pandas.core.frame.DataFrame = None, dyn_cims: dict = None)¶
    +

    Bases: abc.ABC

    +

    Abstract class that exposes the methods to save in json format a network information +along with one or more trajectories generated basing on it

    +
    +
    Parameters
    +
      +

    • _variables (pandas.DataFrame) – Dataframe containing the nodes labels and cardinalities

      • +

    • _dyn_str (pandas.DataFrame) – Dataframe containing the structure of the network (edges)

      • +

    • _dyn_cims (dict) – It contains, for every variable (label is the key), the SetOfCims object related to it

      • +

    • _trajectories (List) – List of trajectories, that can be added subsequently

      • +
    +
    +
    +
    +
    +add_trajectory(trajectory: list)¶
    +

    Add a new trajectory to the current list

    +
    +
    Parameters
    +

    trajectory (pandas.DataFrame) – The trajectory to add

    +
    +
    +
    + +
    +
    +abstract out_file(filename)¶
    +
    +
    Create a file in current directory and write on it the previously added data

    (variables, dyn_str, dyn_cims and trajectories)

    +
    +
    +
    +
    Parameters
    +

    filename (string) – Name of the output file (it must include json extension)

    +
    +
    +
    + +
    -

    PyCTBN.PyCTBN.utility.abstract_importer module¶

    -
    -class PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter(file_path: Optional[str] = None, trajectory_list: Optional[Union[pandas.core.frame.DataFrame, numpy.ndarray]] = None, variables: Optional[pandas.core.frame.DataFrame] = None, prior_net_structure: Optional[pandas.core.frame.DataFrame] = None)¶
    +
    +class PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter(file_path: str = None, trajectory_list: Union[pandas.core.frame.DataFrame, numpy.ndarray] = None, variables: pandas.core.frame.DataFrame = None, prior_net_structure: pandas.core.frame.DataFrame = None)¶

    Bases: abc.ABC

    Abstract class that exposes all the necessary methods to process the trajectories and the net structure.

    @@ -161,8 +201,8 @@ See the tutorial on how to construct a correct JsonImporter for an example implementation

    -
    -build_list_of_samples_array(concatenated_sample: pandas.core.frame.DataFrame) → List¶
    +
    +build_list_of_samples_array(concatenated_sample: pandas.core.frame.DataFrame) → List¶

    Builds a List containing the the delta times numpy array, and the complete transitions matrix

    Parameters
    @@ -179,8 +219,8 @@ and converted

    -
    -abstract build_sorter(trajecory_header: object) → List¶
    +
    +abstract build_sorter(trajecory_header: object) → List¶

    Initializes the _sorter class member from a trajectory dataframe, exctracting the header of the frame and keeping ONLY the variables symbolic labels, cutting out the time label in the header.

    @@ -197,14 +237,14 @@ and keeping ONLY the variables symbolic labels, cutting out the time label in th
    -
    -clear_concatenated_frame() → None¶
    +
    +clear_concatenated_frame() → None¶

    Removes all values in the dataframe concatenated_samples.

    -
    -compute_row_delta_in_all_samples_frames(df_samples_list: List) → None¶
    +
    +compute_row_delta_in_all_samples_frames(df_samples_list: List) → None¶

    Calls the method compute_row_delta_sigle_samples_frame on every dataframe present in the list df_samples_list. Concatenates the result in the dataframe concatanated_samples

    @@ -227,8 +267,8 @@ and merged trajectories

    -
    -compute_row_delta_sigle_samples_frame(sample_frame: pandas.core.frame.DataFrame, columns_header: List, shifted_cols_header: List) → pandas.core.frame.DataFrame¶
    +
    +compute_row_delta_sigle_samples_frame(sample_frame: pandas.core.frame.DataFrame, columns_header: List, shifted_cols_header: List) → pandas.core.frame.DataFrame¶

    Computes the difference between each value present in th time column. Copies and shift by one position up all the values present in the remaining columns.

    @@ -253,36 +293,36 @@ Header of sample_frame = [Time | Variable values]

    -
    -
    -property concatenated_samples: pandas.core.frame.DataFrame¶
    +
    +
    +property concatenated_samples¶
    -
    -abstract dataset_id() → object¶
    +
    +abstract dataset_id() → object¶

    If the original dataset contains multiple dataset, this method returns a unique id to identify the current dataset

    -
    -
    -property file_path: str¶
    +
    +
    +property file_path¶
    -
    -
    -property sorter: List¶
    +
    +
    +property sorter¶
    -
    -
    -property structure: pandas.core.frame.DataFrame¶
    +
    +
    +property structure¶
    -
    -
    -property variables: pandas.core.frame.DataFrame¶
    +
    +
    +property variables¶
    @@ -291,8 +331,8 @@ dataset

    PyCTBN.PyCTBN.utility.cache module¶

    -
    -class PyCTBN.PyCTBN.utility.cache.Cache¶
    +
    +class PyCTBN.PyCTBN.utility.cache.Cache¶

    Bases: object

    This class acts as a cache of SetOfCims objects for a node.

    @@ -305,14 +345,14 @@ index is related

    -
    -clear()¶
    +
    +clear()¶

    Clear the contents both of __actual_cache and __list_of_sets_of_parents.

    -
    -find(parents_comb: Set)¶
    +
    +find(parents_comb: Set)¶

    Tries to find in cache given the symbolic parents combination parents_comb the SetOfCims related to that parents_comb.

    @@ -330,8 +370,8 @@ None otherwise.

    -
    -put(parents_comb: Set, socim: PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims)¶
    +
    +put(parents_comb: Set, socim: PyCTBN.PyCTBN.structure_graph.set_of_cims.SetOfCims)¶

    Place in cache the SetOfCims object, and the related symbolic index parents_comb in __list_of_sets_of_parents.

    @@ -346,14 +386,52 @@ None otherwise.

    +
    +
    +

    PyCTBN.PyCTBN.utility.json_exporter module¶

    +
    +
    +class PyCTBN.PyCTBN.utility.json_exporter.JsonExporter(variables: pandas.core.frame.DataFrame = None, dyn_str: pandas.core.frame.DataFrame = None, dyn_cims: dict = None)¶
    +

    Bases: PyCTBN.PyCTBN.utility.abstract_exporter.AbstractExporter

    +

    Provides the methods to save in json format a network information +along with one or more trajectories generated basing on it

    +
    +
    Parameters
    +
      +

    • _variables (pandas.DataFrame) – Dataframe containing the nodes labels and cardinalities

      • +

    • _dyn_str (pandas.DataFrame) – Dataframe containing the structure of the network (edges)

      • +

    • _dyn_cims (dict) – It contains, for every variable (label is the key), the SetOfCims object related to it

      • +

    • _trajectories (List) – List of trajectories, that can be added subsequently

      • +
    +
    +
    +
    +
    +cims_to_json() → dict¶
    +
    + +
    +
    +out_file(filename)¶
    +
    +
    Create a file in current directory and write on it the previously added data

    (variables, dyn_str, dyn_cims and trajectories)

    +
    +
    +
    +
    Parameters
    +

    filename (string) – Name of the output file (it must include json extension)

    +
    +
    +
    + +
    -

    PyCTBN.PyCTBN.utility.json_importer module¶

    -
    -class PyCTBN.PyCTBN.utility.json_importer.JsonImporter(file_path: str, samples_label: str, structure_label: str, variables_label: str, time_key: str, variables_key: str, cims_label: Optional[str] = None)¶
    +
    +class PyCTBN.PyCTBN.utility.json_importer.JsonImporter(file_path: str, samples_label: str, structure_label: str, variables_label: str, time_key: str, variables_key: str, cims_label: str = None)¶

    Bases: PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter

    Implements the abstracts methods of AbstractImporter and adds all the necessary methods to process and prepare the data in json extension.

    @@ -379,29 +457,27 @@ the data in json extension.

    -
    -build_sorter(sample_frame: pandas.core.frame.DataFrame) → List¶
    +
    +build_sorter(sample_frame: pandas.core.frame.DataFrame) → List¶

    Implements the abstract method build_sorter of the AbstractImporter for this dataset.

    -
    -clear_data_frame_list() → None¶
    +
    +clear_data_frame_list() → None¶

    Removes all values present in the dataframes in the list _df_samples_list.

    -
    -dataset_id() → object¶
    +
    +dataset_id() → object¶

    If the original dataset contains multiple dataset, this method returns a unique id to identify the current dataset

    -
    import_data(indx: int = 0) → None¶
    -

    Implements the abstract method of AbstractImporter.

    Parameters
    @@ -411,8 +487,8 @@ dataset

    -
    -import_sampled_cims(raw_data: List, indx: int, cims_key: str) → Dict¶
    +
    +import_sampled_cims(raw_data: List, indx: int, cims_key: str) → Dict¶

    Imports the synthetic CIMS in the dataset in a dictionary, using variables labels as keys for the set of CIMS of a particular node.

    @@ -433,8 +509,8 @@ as keys for the set of CIMS of a particular node.

    -
    -import_structure(raw_data: List) → pandas.core.frame.DataFrame¶
    +
    +import_structure(raw_data: List) → pandas.core.frame.DataFrame¶

    Imports in a dataframe the data in the list raw_data at the key _structure_label

    Parameters
    @@ -450,8 +526,8 @@ as keys for the set of CIMS of a particular node.

    -
    -import_trajectories(raw_data: List) → List¶
    +
    +import_trajectories(raw_data: List) → List¶

    Imports the trajectories from the list of dicts raw_data.

    Parameters
    @@ -467,8 +543,8 @@ as keys for the set of CIMS of a particular node.

    -
    -import_variables(raw_data: List) → pandas.core.frame.DataFrame¶
    +
    +import_variables(raw_data: List) → pandas.core.frame.DataFrame¶

    Imports the data in raw_data at the key _variables_label.

    Parameters
    @@ -484,8 +560,8 @@ as keys for the set of CIMS of a particular node.

    -
    -normalize_trajectories(raw_data: List, indx: int, trajectories_key: str) → List¶
    +
    +normalize_trajectories(raw_data: List, indx: int, trajectories_key: str) → List¶

    Extracts the trajectories in raw_data at the index index at the key trajectories key.

    Parameters
    @@ -505,8 +581,8 @@ as keys for the set of CIMS of a particular node.

    -
    -one_level_normalizing(raw_data: List, indx: int, key: str) → pandas.core.frame.DataFrame¶
    +
    +one_level_normalizing(raw_data: List, indx: int, key: str) → pandas.core.frame.DataFrame¶

    Extracts the one-level nested data in the list raw_data at the index indx at the key key.

    Parameters
    @@ -526,8 +602,8 @@ as keys for the set of CIMS of a particular node.

    -
    -read_json_file() → List¶
    +
    +read_json_file() → List¶

    Reads the JSON file in the path self.filePath.

    Returns
    @@ -545,8 +621,8 @@ as keys for the set of CIMS of a particular node.

    PyCTBN.PyCTBN.utility.sample_importer module¶

    -
    -class PyCTBN.PyCTBN.utility.sample_importer.SampleImporter(trajectory_list: Optional[Union[pandas.core.frame.DataFrame, numpy.ndarray, List]] = None, variables: Optional[Union[pandas.core.frame.DataFrame, numpy.ndarray, List]] = None, prior_net_structure: Optional[Union[pandas.core.frame.DataFrame, numpy.ndarray, List]] = None)¶
    +
    +class PyCTBN.PyCTBN.utility.sample_importer.SampleImporter(trajectory_list: Union[pandas.core.frame.DataFrame, numpy.ndarray, List] = None, variables: Union[pandas.core.frame.DataFrame, numpy.ndarray, List] = None, prior_net_structure: Union[pandas.core.frame.DataFrame, numpy.ndarray, List] = None)¶

    Bases: PyCTBN.PyCTBN.utility.abstract_importer.AbstractImporter

    Implements the abstracts methods of AbstractImporter and adds all the necessary methods to process and prepare the data loaded directly by using DataFrame

    @@ -566,21 +642,21 @@ the data loaded directly by using DataFrame

    -
    -build_sorter(sample_frame: pandas.core.frame.DataFrame) → List¶
    +
    +build_sorter(sample_frame: pandas.core.frame.DataFrame) → List¶

    Implements the abstract method build_sorter of the AbstractImporter in order to get the ordered variables list.

    -
    -dataset_id() → str¶
    +
    +dataset_id() → str¶

    If the original dataset contains multiple dataset, this method returns a unique id to identify the current dataset

    -
    -import_data(header_column=None)¶
    +
    +import_data(header_column=None)¶
    @@ -628,9 +704,6 @@ dataset

    FILE_SUFFIX:'.html', HAS_SOURCE: true }; - - + diff --git a/docs/PyCTBN.html b/docs/PyCTBN.html index a6024f3..c4d5c15 100644 --- a/docs/PyCTBN.html +++ b/docs/PyCTBN.html @@ -19,10 +19,6 @@ - - - - @@ -177,29 +173,29 @@
  • PyCTBN.tests.estimators package
  • PyCTBN.tests.optimizers package
  • PyCTBN.tests.structure_graph package
    • @@ -221,10 +217,14 @@

    Submodules¶

    - +
    +
    +

    PyCTBN.basic_main module¶

    +
    +
    +

    PyCTBN.setup module¶

    -

    Module contents¶

    @@ -257,9 +257,6 @@ FILE_SUFFIX:'.html', HAS_SOURCE: true }; - - + diff --git a/docs/PyCTBN.tests.estimators.html b/docs/PyCTBN.tests.estimators.html index c39f871..8a63d1f 100644 --- a/docs/PyCTBN.tests.estimators.html +++ b/docs/PyCTBN.tests.estimators.html @@ -19,10 +19,6 @@ - - - - @@ -124,43 +120,42 @@

    PyCTBN.tests.estimators.test_parameters_estimator module¶

    -
    -class PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior(methodName='runTest')¶
    +
    +class PyCTBN.tests.estimators.test_parameters_estimator.TestParametersEstimatior(methodName='runTest')¶

    Bases: unittest.case.TestCase

    -
    -aux_import_sampled_cims(cims_label)¶
    +
    +aux_import_sampled_cims(cims_label)¶
    -
    -cim_equality_test(cim1, cim2)¶
    +
    +cim_equality_test(cim1, cim2)¶
    -
    -equality_of_cims_of_node(sampled_cims, estimated_cims)¶
    +
    +equality_of_cims_of_node(sampled_cims, estimated_cims)¶
    -
    -classmethod setUpClass() → None¶
    +
    +classmethod setUpClass() → None¶

    Hook method for setting up class fixture before running tests in the class.

    -
    -test_compute_parameters_for_node()¶
    +
    +test_compute_parameters_for_node()¶
    -
    -test_fast_init()¶
    +
    +test_fast_init()¶
    -

    PyCTBN.tests.estimators.test_structure_constraint_based_estimator module¶

    @@ -193,61 +188,59 @@
    -

    PyCTBN.tests.estimators.test_structure_estimator module¶

    -
    -class PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator(methodName='runTest')¶
    +
    +class PyCTBN.tests.estimators.test_structure_estimator.TestStructureEstimator(methodName='runTest')¶

    Bases: unittest.case.TestCase

    -
    -classmethod setUpClass()¶
    +
    +classmethod setUpClass()¶

    Hook method for setting up class fixture before running tests in the class.

    -
    -test_adjacency_matrix()¶
    +
    +test_adjacency_matrix()¶
    -
    -test_build_complete_graph()¶
    +
    +test_build_complete_graph()¶
    -
    -test_build_removable_edges_matrix()¶
    +
    +test_build_removable_edges_matrix()¶
    -
    -test_generate_possible_sub_sets_of_size()¶
    +
    +test_generate_possible_sub_sets_of_size()¶
    -
    -test_init()¶
    +
    +test_init()¶
    -
    -test_save_plot_estimated_graph()¶
    +
    +test_save_plot_estimated_graph()¶
    -
    -test_save_results()¶
    +
    +test_save_results()¶
    -
    -test_time()¶
    +
    +test_time()¶
    -

    PyCTBN.tests.estimators.test_structure_score_based_estimator module¶

    @@ -317,9 +310,6 @@ FILE_SUFFIX:'.html', HAS_SOURCE: true }; - - + diff --git a/docs/PyCTBN.tests.html b/docs/PyCTBN.tests.html index 57c3a3d..7036b72 100644 --- a/docs/PyCTBN.tests.html +++ b/docs/PyCTBN.tests.html @@ -19,10 +19,6 @@ - - - - @@ -125,29 +121,29 @@
  • PyCTBN.tests.estimators package
  • PyCTBN.tests.optimizers package
  • PyCTBN.tests.structure_graph package
    • @@ -195,9 +191,6 @@ FILE_SUFFIX:'.html', HAS_SOURCE: true }; - - + diff --git a/docs/PyCTBN.tests.optimizers.html b/docs/PyCTBN.tests.optimizers.html index 2e20c9a..96038cc 100644 --- a/docs/PyCTBN.tests.optimizers.html +++ b/docs/PyCTBN.tests.optimizers.html @@ -19,10 +19,6 @@ - - - - @@ -204,9 +200,6 @@ FILE_SUFFIX:'.html', HAS_SOURCE: true }; - - + diff --git a/docs/PyCTBN.tests.structure_graph.html b/docs/PyCTBN.tests.structure_graph.html index 581cd0c..a63e83d 100644 --- a/docs/PyCTBN.tests.structure_graph.html +++ b/docs/PyCTBN.tests.structure_graph.html @@ -19,10 +19,6 @@ - - - - @@ -124,28 +120,47 @@

    PyCTBN.tests.structure_graph.test_cim module¶

    -
    -class PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix(methodName='runTest')¶
    +
    +class PyCTBN.tests.structure_graph.test_cim.TestConditionalIntensityMatrix(methodName='runTest')¶

    Bases: unittest.case.TestCase

    -
    -classmethod setUpClass() → None¶
    +
    +classmethod setUpClass() → None¶

    Hook method for setting up class fixture before running tests in the class.

    -
    -test_compute_cim_coefficients()¶
    +
    +test_compute_cim_coefficients()¶
    -
    -test_init()¶
    +
    +test_init()¶
    -
    -test_repr()¶
    +
    +test_repr()¶
    +
    + +
    + +
    +
    +

    PyCTBN.tests.structure_graph.test_networkgenerator module¶

    +
    +
    +class PyCTBN.tests.structure_graph.test_networkgenerator.TestNetworkGenerator(methodName='runTest')¶
    +

    Bases: unittest.case.TestCase

    +
    +
    +test_generate_cims()¶
    +
    + +
    +
    +test_generate_graph()¶
    @@ -154,103 +169,103 @@

    PyCTBN.tests.structure_graph.test_networkgraph module¶

    -
    -class PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph(methodName='runTest')¶
    +
    +class PyCTBN.tests.structure_graph.test_networkgraph.TestNetworkGraph(methodName='runTest')¶

    Bases: unittest.case.TestCase

    -
    -aux_build_p_combs_structure(graph, p_vals)¶
    +
    +aux_build_p_combs_structure(graph, p_vals)¶
    -
    -aux_build_time_columns_filtering_structure_for_a_node(graph, node_id, p_indxs)¶
    +
    +aux_build_time_columns_filtering_structure_for_a_node(graph, node_id, p_indxs)¶
    -
    -aux_build_time_scalar_indexing_structure_for_a_node(graph, node_id, parents_indxs, parents_labels, parents_vals)¶
    +
    +aux_build_time_scalar_indexing_structure_for_a_node(graph, node_id, parents_indxs, parents_labels, parents_vals)¶
    -
    -aux_build_transition_columns_filtering_structure(graph, node_id, p_indxs)¶
    +
    +aux_build_transition_columns_filtering_structure(graph, node_id, p_indxs)¶
    -
    -aux_build_transition_scalar_indexing_structure_for_a_node(graph, node_id, parents_indxs, parents_labels, parents_values)¶
    +
    +aux_build_transition_scalar_indexing_structure_for_a_node(graph, node_id, parents_indxs, parents_labels, parents_values)¶
    -
    -classmethod setUpClass()¶
    +
    +classmethod setUpClass()¶

    Hook method for setting up class fixture before running tests in the class.

    -
    -test_add_edges()¶
    +
    +test_add_edges()¶
    -
    -test_add_nodes()¶
    +
    +test_add_nodes()¶
    -
    -test_build_p_combs_structure()¶
    +
    +test_build_p_combs_structure()¶
    -
    -test_build_time_columns_filtering_structure_for_a_node()¶
    +
    +test_build_time_columns_filtering_structure_for_a_node()¶
    -
    -test_build_time_scalar_indexing_structure_for_a_node()¶
    +
    +test_build_time_scalar_indexing_structure_for_a_node()¶
    -
    -test_build_transition_columns_filtering_structure()¶
    +
    +test_build_transition_columns_filtering_structure()¶
    -
    -test_build_transition_scalar_indexing_structure_for_a_node()¶
    +
    +test_build_transition_scalar_indexing_structure_for_a_node()¶
    -
    -test_fast_init()¶
    +
    +test_fast_init()¶
    -
    -test_get_node_indx()¶
    +
    +test_get_node_indx()¶
    -
    -test_get_ordered_by_indx_set_of_parents()¶
    +
    +test_get_ordered_by_indx_set_of_parents()¶
    -
    -test_get_parents_by_id()¶
    +
    +test_get_parents_by_id()¶
    -
    -test_get_states_number()¶
    +
    +test_get_states_number()¶
    -
    -test_init()¶
    +
    +test_init()¶
    @@ -259,58 +274,58 @@

    PyCTBN.tests.structure_graph.test_sample_path module¶

    -
    -class PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath(methodName='runTest')¶
    +
    +class PyCTBN.tests.structure_graph.test_sample_path.TestSamplePath(methodName='runTest')¶

    Bases: unittest.case.TestCase

    -
    -classmethod setUpClass() → None¶
    +
    +classmethod setUpClass() → None¶

    Hook method for setting up class fixture before running tests in the class.

    -
    -test_buid_samplepath_no_concatenated_samples()¶
    +
    +test_buid_samplepath_no_concatenated_samples()¶
    -
    -test_buid_samplepath_no_variables()¶
    +
    +test_buid_samplepath_no_variables()¶
    -
    -test_build_saplepath_no_prior_net_structure()¶
    +
    +test_build_saplepath_no_prior_net_structure()¶
    -
    -test_build_structure()¶
    +
    +test_build_structure()¶
    -
    -test_build_structure_bad_sorter()¶
    +
    +test_build_structure_bad_sorter()¶
    -
    -test_build_trajectories()¶
    +
    +test_build_trajectories()¶
    -
    -test_init()¶
    +
    +test_init()¶
    -
    -test_init_not_filled_dataframse()¶
    +
    +test_init_not_filled_dataframse()¶
    -
    -test_init_not_initialized_importer()¶
    +
    +test_init_not_initialized_importer()¶
    @@ -319,27 +334,27 @@

    PyCTBN.tests.structure_graph.test_setofcims module¶

    -
    -class PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims(methodName='runTest')¶
    +
    +class PyCTBN.tests.structure_graph.test_setofcims.TestSetOfCims(methodName='runTest')¶

    Bases: unittest.case.TestCase

    -
    -another_filtering_method(p_combs, mask, parent_value)¶
    +
    +another_filtering_method(p_combs, mask, parent_value)¶
    -
    -aux_test_build_cims(node_id, p_values, node_states, p_combs)¶
    +
    +aux_test_build_cims(node_id, p_values, node_states, p_combs)¶
    -
    -aux_test_init(node_id, parents_states_number, node_states_number, p_combs)¶
    +
    +aux_test_init(node_id, parents_states_number, node_states_number, p_combs)¶
    -
    -build_p_comb_structure_for_a_node(parents_values)¶
    +
    +build_p_comb_structure_for_a_node(parents_values)¶

    Builds the combinatory structure that contains the combinations of all the values contained in parents_values.

    Parameters:

    parents_values: the cardinalities of the nodes

    @@ -350,24 +365,24 @@
    -
    -classmethod setUpClass() → None¶
    +
    +classmethod setUpClass() → None¶

    Hook method for setting up class fixture before running tests in the class.

    -
    -test_build_cims()¶
    +
    +test_build_cims()¶
    -
    -test_filter_cims_with_mask()¶
    +
    +test_filter_cims_with_mask()¶
    -
    -test_init()¶
    +
    +test_init()¶
    @@ -376,53 +391,53 @@

    PyCTBN.tests.structure_graph.test_structure module¶

    -
    -class PyCTBN.tests.structure_graph.test_structure.TestStructure(methodName='runTest')¶
    +
    +class PyCTBN.tests.structure_graph.test_structure.TestStructure(methodName='runTest')¶

    Bases: unittest.case.TestCase

    -
    -classmethod setUpClass()¶
    +
    +classmethod setUpClass()¶

    Hook method for setting up class fixture before running tests in the class.

    -
    -test_edges_operations()¶
    +
    +test_edges_operations()¶
    -
    -test_equality()¶
    +
    +test_equality()¶
    -
    -test_get_node_id()¶
    +
    +test_get_node_id()¶
    -
    -test_get_node_indx()¶
    +
    +test_get_node_indx()¶
    -
    -test_get_positional_node_indx()¶
    +
    +test_get_positional_node_indx()¶
    -
    -test_get_states_number()¶
    +
    +test_get_states_number()¶
    -
    -test_init()¶
    +
    +test_init()¶
    -
    -test_repr()¶
    +
    +test_repr()¶
    @@ -431,22 +446,56 @@

    PyCTBN.tests.structure_graph.test_trajectory module¶

    -
    -class PyCTBN.tests.structure_graph.test_trajectory.TestTrajectory(methodName='runTest')¶
    +
    +class PyCTBN.tests.structure_graph.test_trajectory.TestTrajectory(methodName='runTest')¶

    Bases: unittest.case.TestCase

    -
    -classmethod setUpClass() → None¶
    +
    +classmethod setUpClass() → None¶

    Hook method for setting up class fixture before running tests in the class.

    -
    -test_init()¶
    +
    +test_init()¶
    +
    +
    +

    PyCTBN.tests.structure_graph.test_trajectorygenerator module¶

    +
    +
    +class PyCTBN.tests.structure_graph.test_trajectorygenerator.TestTrajectoryGenerator(methodName='runTest')¶
    +

    Bases: unittest.case.TestCase

    +
    +
    +classmethod setUpClass() → None¶
    +

    Hook method for setting up class fixture before running tests in the class.

    +
    + +
    +
    +test_generated_trajectory()¶
    +
    + +
    +
    +test_generated_trajectory_max_tr()¶
    +
    + +
    +
    +test_init()¶
    +
    + +
    +
    +test_multi_trajectory()¶
    +
    + +
    @@ -482,9 +531,6 @@ FILE_SUFFIX:'.html', HAS_SOURCE: true }; - - + diff --git a/docs/PyCTBN.tests.utility.html b/docs/PyCTBN.tests.utility.html index 6e10516..606ce71 100644 --- a/docs/PyCTBN.tests.utility.html +++ b/docs/PyCTBN.tests.utility.html @@ -19,10 +19,6 @@ - - - - @@ -124,27 +120,27 @@

    PyCTBN.tests.utility.test_cache module¶

    -
    -class PyCTBN.tests.utility.test_cache.TestCache(methodName='runTest')¶
    +
    +class PyCTBN.tests.utility.test_cache.TestCache(methodName='runTest')¶

    Bases: unittest.case.TestCase

    -
    -test_clear()¶
    +
    +test_clear()¶
    -
    -test_find()¶
    +
    +test_find()¶
    -
    -test_init()¶
    +
    +test_init()¶
    -
    -test_put()¶
    +
    +test_put()¶
    @@ -153,108 +149,108 @@

    PyCTBN.tests.utility.test_json_importer module¶

    -
    -class PyCTBN.tests.utility.test_json_importer.TestJsonImporter(methodName='runTest')¶
    +
    +class PyCTBN.tests.utility.test_json_importer.TestJsonImporter(methodName='runTest')¶

    Bases: unittest.case.TestCase

    -
    -ordered(obj)¶
    +
    +ordered(obj)¶
    -
    -classmethod setUpClass() → None¶
    +
    +classmethod setUpClass() → None¶

    Hook method for setting up class fixture before running tests in the class.

    -
    -test_build_sorter()¶
    +
    +test_build_sorter()¶
    -
    -test_clear_concatenated_frame()¶
    +
    +test_clear_concatenated_frame()¶
    -
    -test_clear_data_frame_list()¶
    +
    +test_clear_data_frame_list()¶
    -
    -test_compute_row_delta_in_all_frames()¶
    +
    +test_compute_row_delta_in_all_frames()¶
    -
    -test_compute_row_delta_in_all_frames_not_init_sorter()¶
    +
    +test_compute_row_delta_in_all_frames_not_init_sorter()¶
    -
    -test_compute_row_delta_single_samples_frame()¶
    +
    +test_compute_row_delta_single_samples_frame()¶
    -
    -test_dataset_id()¶
    +
    +test_dataset_id()¶
    -
    -test_file_path()¶
    +
    +test_file_path()¶
    -
    -test_import_data()¶
    +
    +test_import_data()¶
    -
    -test_import_sampled_cims()¶
    +
    +test_import_sampled_cims()¶
    -
    -test_import_structure()¶
    +
    +test_import_structure()¶
    -
    -test_import_variables()¶
    +
    +test_import_variables()¶
    -
    -test_init()¶
    +
    +test_init()¶
    -
    -test_normalize_trajectories()¶
    +
    +test_normalize_trajectories()¶
    -
    -test_normalize_trajectories_wrong_indx()¶
    +
    +test_normalize_trajectories_wrong_indx()¶
    -
    -test_normalize_trajectories_wrong_key()¶
    +
    +test_normalize_trajectories_wrong_key()¶
    -
    -test_read_json_file_found()¶
    +
    +test_read_json_file_found()¶
    -
    -test_read_json_file_not_found()¶
    +
    +test_read_json_file_not_found()¶
    @@ -263,28 +259,28 @@

    PyCTBN.tests.utility.test_sample_importer module¶

    -
    -class PyCTBN.tests.utility.test_sample_importer.TestSampleImporter(methodName='runTest')¶
    +
    +class PyCTBN.tests.utility.test_sample_importer.TestSampleImporter(methodName='runTest')¶

    Bases: unittest.case.TestCase

    -
    -ordered(obj)¶
    +
    +ordered(obj)¶
    -
    -classmethod setUpClass() → None¶
    +
    +classmethod setUpClass() → None¶

    Hook method for setting up class fixture before running tests in the class.

    -
    -test_init()¶
    +
    +test_init()¶
    -
    -test_order()¶
    +
    +test_order()¶
    @@ -323,9 +319,6 @@ FILE_SUFFIX:'.html', HAS_SOURCE: true }; - - + diff --git a/docs/_static/basic.css b/docs/_static/basic.css index aa9df31..24a49f0 100644 --- a/docs/_static/basic.css +++ b/docs/_static/basic.css @@ -4,7 +4,7 @@ * * Sphinx stylesheet -- basic theme. * - * :copyright: Copyright 2007-2021 by the Sphinx team, see AUTHORS. + * :copyright: Copyright 2007-2020 by the Sphinx team, see AUTHORS. * :license: BSD, see LICENSE for details. * */ @@ -130,7 +130,7 @@ ul.search li a { font-weight: bold; } -ul.search li p.context { +ul.search li div.context { color: #888; margin: 2px 0 0 30px; text-align: left; @@ -277,25 +277,25 @@ p.rubric { font-weight: bold; } -img.align-left, figure.align-left, .figure.align-left, object.align-left { +img.align-left, .figure.align-left, object.align-left { clear: left; float: left; margin-right: 1em; } -img.align-right, figure.align-right, .figure.align-right, object.align-right { +img.align-right, .figure.align-right, object.align-right { clear: right; float: right; margin-left: 1em; } -img.align-center, figure.align-center, .figure.align-center, object.align-center { +img.align-center, .figure.align-center, object.align-center { display: block; margin-left: auto; margin-right: auto; } -img.align-default, figure.align-default, .figure.align-default { +img.align-default, .figure.align-default { display: block; margin-left: auto; margin-right: auto; @@ -319,8 +319,7 @@ img.align-default, figure.align-default, .figure.align-default { /* -- sidebars -------------------------------------------------------------- */ -div.sidebar, -aside.sidebar { +div.sidebar { margin: 0 0 0.5em 1em; border: 1px solid #ddb; padding: 7px; @@ -378,14 +377,12 @@ div.body p.centered { /* -- content of sidebars/topics/admonitions -------------------------------- */ div.sidebar > :last-child, -aside.sidebar > :last-child, div.topic > :last-child, div.admonition > :last-child { margin-bottom: 0; } div.sidebar::after, -aside.sidebar::after, div.topic::after, div.admonition::after, blockquote::after { @@ -458,22 +455,20 @@ td > :last-child { /* -- figures --------------------------------------------------------------- */ -div.figure, figure { +div.figure { margin: 0.5em; padding: 0.5em; } -div.figure p.caption, figcaption { +div.figure p.caption { padding: 0.3em; } -div.figure p.caption span.caption-number, -figcaption span.caption-number { +div.figure p.caption span.caption-number { font-style: italic; } -div.figure p.caption span.caption-text, -figcaption span.caption-text { +div.figure p.caption span.caption-text { } /* -- field list styles ----------------------------------------------------- */ @@ -508,63 +503,6 @@ table.hlist td { vertical-align: top; } -/* -- object description styles --------------------------------------------- */ - -.sig { - font-family: 'Consolas', 'Menlo', 'DejaVu Sans Mono', 'Bitstream Vera Sans Mono', monospace; -} - -.sig-name, code.descname { - background-color: transparent; - font-weight: bold; -} - -.sig-name { - font-size: 1.1em; -} - -code.descname { - font-size: 1.2em; -} - -.sig-prename, code.descclassname { - background-color: transparent; -} - -.optional { - font-size: 1.3em; -} - -.sig-paren { - font-size: larger; -} - -.sig-param.n { - font-style: italic; -} - -/* C++ specific styling */ - -.sig-inline.c-texpr, -.sig-inline.cpp-texpr { - font-family: unset; -} - -.sig.c .k, .sig.c .kt, -.sig.cpp .k, .sig.cpp .kt { - color: #0033B3; -} - -.sig.c .m, -.sig.cpp .m { - color: #1750EB; -} - -.sig.c .s, .sig.c .sc, -.sig.cpp .s, .sig.cpp .sc { - color: #067D17; -} - /* -- other body styles ----------------------------------------------------- */ @@ -691,6 +629,14 @@ dl.glossary dt { font-size: 1.1em; } +.optional { + font-size: 1.3em; +} + +.sig-paren { + font-size: larger; +} + .versionmodified { font-style: italic; } @@ -820,11 +766,7 @@ div.code-block-caption code { table.highlighttable td.linenos, span.linenos, div.doctest > div.highlight span.gp { /* gp: Generic.Prompt */ - user-select: none; - -webkit-user-select: text; /* Safari fallback only */ - -webkit-user-select: none; /* Chrome/Safari */ - -moz-user-select: none; /* Firefox */ - -ms-user-select: none; /* IE10+ */ + user-select: none; } div.code-block-caption span.caption-number { @@ -839,6 +781,16 @@ div.literal-block-wrapper { margin: 1em 0; } +code.descname { + background-color: transparent; + font-weight: bold; + font-size: 1.2em; +} + +code.descclassname { + background-color: transparent; +} + code.xref, a code { background-color: transparent; font-weight: bold; diff --git a/docs/_static/doctools.js b/docs/_static/doctools.js index 61ac9d2..7d88f80 100644 --- a/docs/_static/doctools.js +++ b/docs/_static/doctools.js @@ -4,7 +4,7 @@ * * Sphinx JavaScript utilities for all documentation. * - * :copyright: Copyright 2007-2021 by the Sphinx team, see AUTHORS. + * :copyright: Copyright 2007-2020 by the Sphinx team, see AUTHORS. * :license: BSD, see LICENSE for details. * */ @@ -29,14 +29,9 @@ if (!window.console || !console.firebug) { /** * small helper function to urldecode strings - * - * See https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/decodeURIComponent#Decoding_query_parameters_from_a_URL */ jQuery.urldecode = function(x) { - if (!x) { - return x - } - return decodeURIComponent(x.replace(/\+/g, ' ')); + return decodeURIComponent(x).replace(/\+/g, ' '); }; /** diff --git a/docs/_static/language_data.js b/docs/_static/language_data.js index 863704b..d2b4ee9 100644 --- a/docs/_static/language_data.js +++ b/docs/_static/language_data.js @@ -5,7 +5,7 @@ * This script contains the language-specific data used by searchtools.js, * namely the list of stopwords, stemmer, scorer and splitter. * - * :copyright: Copyright 2007-2021 by the Sphinx team, see AUTHORS. + * :copyright: Copyright 2007-2020 by the Sphinx team, see AUTHORS. * :license: BSD, see LICENSE for details. * */ @@ -13,8 +13,7 @@ var stopwords = ["a","and","are","as","at","be","but","by","for","if","in","into","is","it","near","no","not","of","on","or","such","that","the","their","then","there","these","they","this","to","was","will","with"]; -/* Non-minified version is copied as a separate JS file, is available */ - +/* Non-minified version JS is _stemmer.js if file is provided */ /** * Porter Stemmer */ @@ -200,6 +199,7 @@ var Stemmer = function() { + var splitChars = (function() { var result = {}; var singles = [96, 180, 187, 191, 215, 247, 749, 885, 903, 907, 909, 930, 1014, 1648, diff --git a/docs/_static/pygments.css b/docs/_static/pygments.css index 28eb679..348ec44 100644 --- a/docs/_static/pygments.css +++ b/docs/_static/pygments.css @@ -1,7 +1,7 @@ -pre { line-height: 125%; margin: 0; } -td.linenos pre { color: #000000; background-color: #f0f0f0; padding: 0 5px 0 5px; } -span.linenos { color: #000000; background-color: #f0f0f0; padding: 0 5px 0 5px; } -td.linenos pre.special { color: #000000; background-color: #ffffc0; padding: 0 5px 0 5px; } -span.linenos.special { color: #000000; background-color: #ffffc0; padding: 0 5px 0 5px; } +pre { line-height: 125%; } +td.linenos .normal { color: inherit; background-color: transparent; padding-left: 5px; padding-right: 5px; } +span.linenos { color: inherit; background-color: transparent; padding-left: 5px; padding-right: 5px; } +td.linenos .special { color: #000000; background-color: #ffffc0; padding-left: 5px; padding-right: 5px; } +span.linenos.special { color: #000000; background-color: #ffffc0; padding-left: 5px; padding-right: 5px; } .highlight .hll { background-color: #ffffcc } .highlight { background: #ffffff; } \ No newline at end of file diff --git a/docs/_static/searchtools.js b/docs/_static/searchtools.js index e09f926..261ecaa 100644 --- a/docs/_static/searchtools.js +++ b/docs/_static/searchtools.js @@ -4,7 +4,7 @@ * * Sphinx JavaScript utilities for the full-text search. * - * :copyright: Copyright 2007-2021 by the Sphinx team, see AUTHORS. + * :copyright: Copyright 2007-2020 by the Sphinx team, see AUTHORS. * :license: BSD, see LICENSE for details. * */ @@ -248,7 +248,7 @@ var Search = { // results left, load the summary and display it if (results.length) { var item = results.pop(); - var listItem = $('
  • '); + var listItem = $('
  • '); var requestUrl = ""; var linkUrl = ""; if (DOCUMENTATION_OPTIONS.BUILDER === 'dirhtml') { @@ -273,9 +273,9 @@ var Search = { if (item[3]) { listItem.append($(' (' + item[3] + ')')); Search.output.append(listItem); - setTimeout(function() { + listItem.slideDown(5, function() { displayNextItem(); - }, 5); + }); } else if (DOCUMENTATION_OPTIONS.HAS_SOURCE) { $.ajax({url: requestUrl, dataType: "text", @@ -285,16 +285,16 @@ var Search = { listItem.append(Search.makeSearchSummary(data, searchterms, hlterms)); } Search.output.append(listItem); - setTimeout(function() { + listItem.slideDown(5, function() { displayNextItem(); - }, 5); + }); }}); } else { // no source available, just display title Search.output.append(listItem); - setTimeout(function() { + listItem.slideDown(5, function() { displayNextItem(); - }, 5); + }); } } // search finished, update title and status message @@ -379,13 +379,6 @@ var Search = { return results; }, - /** - * See https://developer.mozilla.org/en-US/docs/Web/JavaScript/Guide/Regular_Expressions - */ - escapeRegExp : function(string) { - return string.replace(/[.*+\-?^${}()|[\]\\]/g, '\\$&'); // $& means the whole matched string - }, - /** * search for full-text terms in the index */ @@ -409,14 +402,13 @@ var Search = { ]; // add support for partial matches if (word.length > 2) { - var word_regex = this.escapeRegExp(word); for (var w in terms) { - if (w.match(word_regex) && !terms[word]) { + if (w.match(word) && !terms[word]) { _o.push({files: terms[w], score: Scorer.partialTerm}) } } for (var w in titleterms) { - if (w.match(word_regex) && !titleterms[word]) { + if (w.match(word) && !titleterms[word]) { _o.push({files: titleterms[w], score: Scorer.partialTitle}) } } @@ -509,7 +501,7 @@ var Search = { var excerpt = ((start > 0) ? '...' : '') + $.trim(text.substr(start, 240)) + ((start + 240 - text.length) ? '...' : ''); - var rv = $('

    ').text(excerpt); + var rv = $('
    ').text(excerpt); $.each(hlwords, function() { rv = rv.highlightText(this, 'highlighted'); }); diff --git a/docs/_static/underscore-1.13.1.js b/docs/_static/underscore-1.13.1.js deleted file mode 100644 index ffd77af..0000000 --- a/docs/_static/underscore-1.13.1.js +++ /dev/null @@ -1,2042 +0,0 @@ -(function (global, factory) { - typeof exports === 'object' && typeof module !== 'undefined' ? module.exports = factory() : - typeof define === 'function' && define.amd ? define('underscore', factory) : - (global = typeof globalThis !== 'undefined' ? globalThis : global || self, (function () { - var current = global._; - var exports = global._ = factory(); - exports.noConflict = function () { global._ = current; return exports; }; - }())); -}(this, (function () { - // Underscore.js 1.13.1 - // https://underscorejs.org - // (c) 2009-2021 Jeremy Ashkenas, Julian Gonggrijp, and DocumentCloud and Investigative Reporters & Editors - // Underscore may be freely distributed under the MIT license. - - // Current version. - var VERSION = '1.13.1'; - - // Establish the root object, `window` (`self`) in the browser, `global` - // on the server, or `this` in some virtual machines. We use `self` - // instead of `window` for `WebWorker` support. - var root = typeof self == 'object' && self.self === self && self || - typeof global == 'object' && global.global === global && global || - Function('return this')() || - {}; - - // Save bytes in the minified (but not gzipped) version: - var ArrayProto = Array.prototype, ObjProto = Object.prototype; - var SymbolProto = typeof Symbol !== 'undefined' ? Symbol.prototype : null; - - // Create quick reference variables for speed access to core prototypes. - var push = ArrayProto.push, - slice = ArrayProto.slice, - toString = ObjProto.toString, - hasOwnProperty = ObjProto.hasOwnProperty; - - // Modern feature detection. - var supportsArrayBuffer = typeof ArrayBuffer !== 'undefined', - supportsDataView = typeof DataView !== 'undefined'; - - // All **ECMAScript 5+** native function implementations that we hope to use - // are declared here. - var nativeIsArray = Array.isArray, - nativeKeys = Object.keys, - nativeCreate = Object.create, - nativeIsView = supportsArrayBuffer && ArrayBuffer.isView; - - // Create references to these builtin functions because we override them. - var _isNaN = isNaN, - _isFinite = isFinite; - - // Keys in IE < 9 that won't be iterated by `for key in ...` and thus missed. - var hasEnumBug = !{toString: null}.propertyIsEnumerable('toString'); - var nonEnumerableProps = ['valueOf', 'isPrototypeOf', 'toString', - 'propertyIsEnumerable', 'hasOwnProperty', 'toLocaleString']; - - // The largest integer that can be represented exactly. - var MAX_ARRAY_INDEX = Math.pow(2, 53) - 1; - - // Some functions take a variable number of arguments, or a few expected - // arguments at the beginning and then a variable number of values to operate - // on. This helper accumulates all remaining arguments past the function’s - // argument length (or an explicit `startIndex`), into an array that becomes - // the last argument. Similar to ES6’s "rest parameter". - function restArguments(func, startIndex) { - startIndex = startIndex == null ? func.length - 1 : +startIndex; - return function() { - var length = Math.max(arguments.length - startIndex, 0), - rest = Array(length), - index = 0; - for (; index < length; index++) { - rest[index] = arguments[index + startIndex]; - } - switch (startIndex) { - case 0: return func.call(this, rest); - case 1: return func.call(this, arguments[0], rest); - case 2: return func.call(this, arguments[0], arguments[1], rest); - } - var args = Array(startIndex + 1); - for (index = 0; index < startIndex; index++) { - args[index] = arguments[index]; - } - args[startIndex] = rest; - return func.apply(this, args); - }; - } - - // Is a given variable an object? - function isObject(obj) { - var type = typeof obj; - return type === 'function' || type === 'object' && !!obj; - } - - // Is a given value equal to null? - function isNull(obj) { - return obj === null; - } - - // Is a given variable undefined? - function isUndefined(obj) { - return obj === void 0; - } - - // Is a given value a boolean? - function isBoolean(obj) { - return obj === true || obj === false || toString.call(obj) === '[object Boolean]'; - } - - // Is a given value a DOM element? - function isElement(obj) { - return !!(obj && obj.nodeType === 1); - } - - // Internal function for creating a `toString`-based type tester. - function tagTester(name) { - var tag = '[object ' + name + ']'; - return function(obj) { - return toString.call(obj) === tag; - }; - } - - var isString = tagTester('String'); - - var isNumber = tagTester('Number'); - - var isDate = tagTester('Date'); - - var isRegExp = tagTester('RegExp'); - - var isError = tagTester('Error'); - - var isSymbol = tagTester('Symbol'); - - var isArrayBuffer = tagTester('ArrayBuffer'); - - var isFunction = tagTester('Function'); - - // Optimize `isFunction` if appropriate. Work around some `typeof` bugs in old - // v8, IE 11 (#1621), Safari 8 (#1929), and PhantomJS (#2236). - var nodelist = root.document && root.document.childNodes; - if (typeof /./ != 'function' && typeof Int8Array != 'object' && typeof nodelist != 'function') { - isFunction = function(obj) { - return typeof obj == 'function' || false; - }; - } - - var isFunction$1 = isFunction; - - var hasObjectTag = tagTester('Object'); - - // In IE 10 - Edge 13, `DataView` has string tag `'[object Object]'`. - // In IE 11, the most common among them, this problem also applies to - // `Map`, `WeakMap` and `Set`. - var hasStringTagBug = ( - supportsDataView && hasObjectTag(new DataView(new ArrayBuffer(8))) - ), - isIE11 = (typeof Map !== 'undefined' && hasObjectTag(new Map)); - - var isDataView = tagTester('DataView'); - - // In IE 10 - Edge 13, we need a different heuristic - // to determine whether an object is a `DataView`. - function ie10IsDataView(obj) { - return obj != null && isFunction$1(obj.getInt8) && isArrayBuffer(obj.buffer); - } - - var isDataView$1 = (hasStringTagBug ? ie10IsDataView : isDataView); - - // Is a given value an array? - // Delegates to ECMA5's native `Array.isArray`. - var isArray = nativeIsArray || tagTester('Array'); - - // Internal function to check whether `key` is an own property name of `obj`. - function has$1(obj, key) { - return obj != null && hasOwnProperty.call(obj, key); - } - - var isArguments = tagTester('Arguments'); - - // Define a fallback version of the method in browsers (ahem, IE < 9), where - // there isn't any inspectable "Arguments" type. - (function() { - if (!isArguments(arguments)) { - isArguments = function(obj) { - return has$1(obj, 'callee'); - }; - } - }()); - - var isArguments$1 = isArguments; - - // Is a given object a finite number? - function isFinite$1(obj) { - return !isSymbol(obj) && _isFinite(obj) && !isNaN(parseFloat(obj)); - } - - // Is the given value `NaN`? - function isNaN$1(obj) { - return isNumber(obj) && _isNaN(obj); - } - - // Predicate-generating function. Often useful outside of Underscore. - function constant(value) { - return function() { - return value; - }; - } - - // Common internal logic for `isArrayLike` and `isBufferLike`. - function createSizePropertyCheck(getSizeProperty) { - return function(collection) { - var sizeProperty = getSizeProperty(collection); - return typeof sizeProperty == 'number' && sizeProperty >= 0 && sizeProperty <= MAX_ARRAY_INDEX; - } - } - - // Internal helper to generate a function to obtain property `key` from `obj`. - function shallowProperty(key) { - return function(obj) { - return obj == null ? void 0 : obj[key]; - }; - } - - // Internal helper to obtain the `byteLength` property of an object. - var getByteLength = shallowProperty('byteLength'); - - // Internal helper to determine whether we should spend extensive checks against - // `ArrayBuffer` et al. - var isBufferLike = createSizePropertyCheck(getByteLength); - - // Is a given value a typed array? - var typedArrayPattern = /\[object ((I|Ui)nt(8|16|32)|Float(32|64)|Uint8Clamped|Big(I|Ui)nt64)Array\]/; - function isTypedArray(obj) { - // `ArrayBuffer.isView` is the most future-proof, so use it when available. - // Otherwise, fall back on the above regular expression. - return nativeIsView ? (nativeIsView(obj) && !isDataView$1(obj)) : - isBufferLike(obj) && typedArrayPattern.test(toString.call(obj)); - } - - var isTypedArray$1 = supportsArrayBuffer ? isTypedArray : constant(false); - - // Internal helper to obtain the `length` property of an object. - var getLength = shallowProperty('length'); - - // Internal helper to create a simple lookup structure. - // `collectNonEnumProps` used to depend on `_.contains`, but this led to - // circular imports. `emulatedSet` is a one-off solution that only works for - // arrays of strings. - function emulatedSet(keys) { - var hash = {}; - for (var l = keys.length, i = 0; i < l; ++i) hash[keys[i]] = true; - return { - contains: function(key) { return hash[key]; }, - push: function(key) { - hash[key] = true; - return keys.push(key); - } - }; - } - - // Internal helper. Checks `keys` for the presence of keys in IE < 9 that won't - // be iterated by `for key in ...` and thus missed. Extends `keys` in place if - // needed. - function collectNonEnumProps(obj, keys) { - keys = emulatedSet(keys); - var nonEnumIdx = nonEnumerableProps.length; - var constructor = obj.constructor; - var proto = isFunction$1(constructor) && constructor.prototype || ObjProto; - - // Constructor is a special case. - var prop = 'constructor'; - if (has$1(obj, prop) && !keys.contains(prop)) keys.push(prop); - - while (nonEnumIdx--) { - prop = nonEnumerableProps[nonEnumIdx]; - if (prop in obj && obj[prop] !== proto[prop] && !keys.contains(prop)) { - keys.push(prop); - } - } - } - - // Retrieve the names of an object's own properties. - // Delegates to **ECMAScript 5**'s native `Object.keys`. - function keys(obj) { - if (!isObject(obj)) return []; - if (nativeKeys) return nativeKeys(obj); - var keys = []; - for (var key in obj) if (has$1(obj, key)) keys.push(key); - // Ahem, IE < 9. - if (hasEnumBug) collectNonEnumProps(obj, keys); - return keys; - } - - // Is a given array, string, or object empty? - // An "empty" object has no enumerable own-properties. - function isEmpty(obj) { - if (obj == null) return true; - // Skip the more expensive `toString`-based type checks if `obj` has no - // `.length`. - var length = getLength(obj); - if (typeof length == 'number' && ( - isArray(obj) || isString(obj) || isArguments$1(obj) - )) return length === 0; - return getLength(keys(obj)) === 0; - } - - // Returns whether an object has a given set of `key:value` pairs. - function isMatch(object, attrs) { - var _keys = keys(attrs), length = _keys.length; - if (object == null) return !length; - var obj = Object(object); - for (var i = 0; i < length; i++) { - var key = _keys[i]; - if (attrs[key] !== obj[key] || !(key in obj)) return false; - } - return true; - } - - // If Underscore is called as a function, it returns a wrapped object that can - // be used OO-style. This wrapper holds altered versions of all functions added - // through `_.mixin`. Wrapped objects may be chained. - function _$1(obj) { - if (obj instanceof _$1) return obj; - if (!(this instanceof _$1)) return new _$1(obj); - this._wrapped = obj; - } - - _$1.VERSION = VERSION; - - // Extracts the result from a wrapped and chained object. - _$1.prototype.value = function() { - return this._wrapped; - }; - - // Provide unwrapping proxies for some methods used in engine operations - // such as arithmetic and JSON stringification. - _$1.prototype.valueOf = _$1.prototype.toJSON = _$1.prototype.value; - - _$1.prototype.toString = function() { - return String(this._wrapped); - }; - - // Internal function to wrap or shallow-copy an ArrayBuffer, - // typed array or DataView to a new view, reusing the buffer. - function toBufferView(bufferSource) { - return new Uint8Array( - bufferSource.buffer || bufferSource, - bufferSource.byteOffset || 0, - getByteLength(bufferSource) - ); - } - - // We use this string twice, so give it a name for minification. - var tagDataView = '[object DataView]'; - - // Internal recursive comparison function for `_.isEqual`. - function eq(a, b, aStack, bStack) { - // Identical objects are equal. `0 === -0`, but they aren't identical. - // See the [Harmony `egal` proposal](https://wiki.ecmascript.org/doku.php?id=harmony:egal). - if (a === b) return a !== 0 || 1 / a === 1 / b; - // `null` or `undefined` only equal to itself (strict comparison). - if (a == null || b == null) return false; - // `NaN`s are equivalent, but non-reflexive. - if (a !== a) return b !== b; - // Exhaust primitive checks - var type = typeof a; - if (type !== 'function' && type !== 'object' && typeof b != 'object') return false; - return deepEq(a, b, aStack, bStack); - } - - // Internal recursive comparison function for `_.isEqual`. - function deepEq(a, b, aStack, bStack) { - // Unwrap any wrapped objects. - if (a instanceof _$1) a = a._wrapped; - if (b instanceof _$1) b = b._wrapped; - // Compare `[[Class]]` names. - var className = toString.call(a); - if (className !== toString.call(b)) return false; - // Work around a bug in IE 10 - Edge 13. - if (hasStringTagBug && className == '[object Object]' && isDataView$1(a)) { - if (!isDataView$1(b)) return false; - className = tagDataView; - } - switch (className) { - // These types are compared by value. - case '[object RegExp]': - // RegExps are coerced to strings for comparison (Note: '' + /a/i === '/a/i') - case '[object String]': - // Primitives and their corresponding object wrappers are equivalent; thus, `"5"` is - // equivalent to `new String("5")`. - return '' + a === '' + b; - case '[object Number]': - // `NaN`s are equivalent, but non-reflexive. - // Object(NaN) is equivalent to NaN. - if (+a !== +a) return +b !== +b; - // An `egal` comparison is performed for other numeric values. - return +a === 0 ? 1 / +a === 1 / b : +a === +b; - case '[object Date]': - case '[object Boolean]': - // Coerce dates and booleans to numeric primitive values. Dates are compared by their - // millisecond representations. Note that invalid dates with millisecond representations - // of `NaN` are not equivalent. - return +a === +b; - case '[object Symbol]': - return SymbolProto.valueOf.call(a) === SymbolProto.valueOf.call(b); - case '[object ArrayBuffer]': - case tagDataView: - // Coerce to typed array so we can fall through. - return deepEq(toBufferView(a), toBufferView(b), aStack, bStack); - } - - var areArrays = className === '[object Array]'; - if (!areArrays && isTypedArray$1(a)) { - var byteLength = getByteLength(a); - if (byteLength !== getByteLength(b)) return false; - if (a.buffer === b.buffer && a.byteOffset === b.byteOffset) return true; - areArrays = true; - } - if (!areArrays) { - if (typeof a != 'object' || typeof b != 'object') return false; - - // Objects with different constructors are not equivalent, but `Object`s or `Array`s - // from different frames are. - var aCtor = a.constructor, bCtor = b.constructor; - if (aCtor !== bCtor && !(isFunction$1(aCtor) && aCtor instanceof aCtor && - isFunction$1(bCtor) && bCtor instanceof bCtor) - && ('constructor' in a && 'constructor' in b)) { - return false; - } - } - // Assume equality for cyclic structures. The algorithm for detecting cyclic - // structures is adapted from ES 5.1 section 15.12.3, abstract operation `JO`. - - // Initializing stack of traversed objects. - // It's done here since we only need them for objects and arrays comparison. - aStack = aStack || []; - bStack = bStack || []; - var length = aStack.length; - while (length--) { - // Linear search. Performance is inversely proportional to the number of - // unique nested structures. - if (aStack[length] === a) return bStack[length] === b; - } - - // Add the first object to the stack of traversed objects. - aStack.push(a); - bStack.push(b); - - // Recursively compare objects and arrays. - if (areArrays) { - // Compare array lengths to determine if a deep comparison is necessary. - length = a.length; - if (length !== b.length) return false; - // Deep compare the contents, ignoring non-numeric properties. - while (length--) { - if (!eq(a[length], b[length], aStack, bStack)) return false; - } - } else { - // Deep compare objects. - var _keys = keys(a), key; - length = _keys.length; - // Ensure that both objects contain the same number of properties before comparing deep equality. - if (keys(b).length !== length) return false; - while (length--) { - // Deep compare each member - key = _keys[length]; - if (!(has$1(b, key) && eq(a[key], b[key], aStack, bStack))) return false; - } - } - // Remove the first object from the stack of traversed objects. - aStack.pop(); - bStack.pop(); - return true; - } - - // Perform a deep comparison to check if two objects are equal. - function isEqual(a, b) { - return eq(a, b); - } - - // Retrieve all the enumerable property names of an object. - function allKeys(obj) { - if (!isObject(obj)) return []; - var keys = []; - for (var key in obj) keys.push(key); - // Ahem, IE < 9. - if (hasEnumBug) collectNonEnumProps(obj, keys); - return keys; - } - - // Since the regular `Object.prototype.toString` type tests don't work for - // some types in IE 11, we use a fingerprinting heuristic instead, based - // on the methods. It's not great, but it's the best we got. - // The fingerprint method lists are defined below. - function ie11fingerprint(methods) { - var length = getLength(methods); - return function(obj) { - if (obj == null) return false; - // `Map`, `WeakMap` and `Set` have no enumerable keys. - var keys = allKeys(obj); - if (getLength(keys)) return false; - for (var i = 0; i < length; i++) { - if (!isFunction$1(obj[methods[i]])) return false; - } - // If we are testing against `WeakMap`, we need to ensure that - // `obj` doesn't have a `forEach` method in order to distinguish - // it from a regular `Map`. - return methods !== weakMapMethods || !isFunction$1(obj[forEachName]); - }; - } - - // In the interest of compact minification, we write - // each string in the fingerprints only once. - var forEachName = 'forEach', - hasName = 'has', - commonInit = ['clear', 'delete'], - mapTail = ['get', hasName, 'set']; - - // `Map`, `WeakMap` and `Set` each have slightly different - // combinations of the above sublists. - var mapMethods = commonInit.concat(forEachName, mapTail), - weakMapMethods = commonInit.concat(mapTail), - setMethods = ['add'].concat(commonInit, forEachName, hasName); - - var isMap = isIE11 ? ie11fingerprint(mapMethods) : tagTester('Map'); - - var isWeakMap = isIE11 ? ie11fingerprint(weakMapMethods) : tagTester('WeakMap'); - - var isSet = isIE11 ? ie11fingerprint(setMethods) : tagTester('Set'); - - var isWeakSet = tagTester('WeakSet'); - - // Retrieve the values of an object's properties. - function values(obj) { - var _keys = keys(obj); - var length = _keys.length; - var values = Array(length); - for (var i = 0; i < length; i++) { - values[i] = obj[_keys[i]]; - } - return values; - } - - // Convert an object into a list of `[key, value]` pairs. - // The opposite of `_.object` with one argument. - function pairs(obj) { - var _keys = keys(obj); - var length = _keys.length; - var pairs = Array(length); - for (var i = 0; i < length; i++) { - pairs[i] = [_keys[i], obj[_keys[i]]]; - } - return pairs; - } - - // Invert the keys and values of an object. The values must be serializable. - function invert(obj) { - var result = {}; - var _keys = keys(obj); - for (var i = 0, length = _keys.length; i < length; i++) { - result[obj[_keys[i]]] = _keys[i]; - } - return result; - } - - // Return a sorted list of the function names available on the object. - function functions(obj) { - var names = []; - for (var key in obj) { - if (isFunction$1(obj[key])) names.push(key); - } - return names.sort(); - } - - // An internal function for creating assigner functions. - function createAssigner(keysFunc, defaults) { - return function(obj) { - var length = arguments.length; - if (defaults) obj = Object(obj); - if (length < 2 || obj == null) return obj; - for (var index = 1; index < length; index++) { - var source = arguments[index], - keys = keysFunc(source), - l = keys.length; - for (var i = 0; i < l; i++) { - var key = keys[i]; - if (!defaults || obj[key] === void 0) obj[key] = source[key]; - } - } - return obj; - }; - } - - // Extend a given object with all the properties in passed-in object(s). - var extend = createAssigner(allKeys); - - // Assigns a given object with all the own properties in the passed-in - // object(s). - // (https://developer.mozilla.org/docs/Web/JavaScript/Reference/Global_Objects/Object/assign) - var extendOwn = createAssigner(keys); - - // Fill in a given object with default properties. - var defaults = createAssigner(allKeys, true); - - // Create a naked function reference for surrogate-prototype-swapping. - function ctor() { - return function(){}; - } - - // An internal function for creating a new object that inherits from another. - function baseCreate(prototype) { - if (!isObject(prototype)) return {}; - if (nativeCreate) return nativeCreate(prototype); - var Ctor = ctor(); - Ctor.prototype = prototype; - var result = new Ctor; - Ctor.prototype = null; - return result; - } - - // Creates an object that inherits from the given prototype object. - // If additional properties are provided then they will be added to the - // created object. - function create(prototype, props) { - var result = baseCreate(prototype); - if (props) extendOwn(result, props); - return result; - } - - // Create a (shallow-cloned) duplicate of an object. - function clone(obj) { - if (!isObject(obj)) return obj; - return isArray(obj) ? obj.slice() : extend({}, obj); - } - - // Invokes `interceptor` with the `obj` and then returns `obj`. - // The primary purpose of this method is to "tap into" a method chain, in - // order to perform operations on intermediate results within the chain. - function tap(obj, interceptor) { - interceptor(obj); - return obj; - } - - // Normalize a (deep) property `path` to array. - // Like `_.iteratee`, this function can be customized. - function toPath$1(path) { - return isArray(path) ? path : [path]; - } - _$1.toPath = toPath$1; - - // Internal wrapper for `_.toPath` to enable minification. - // Similar to `cb` for `_.iteratee`. - function toPath(path) { - return _$1.toPath(path); - } - - // Internal function to obtain a nested property in `obj` along `path`. - function deepGet(obj, path) { - var length = path.length; - for (var i = 0; i < length; i++) { - if (obj == null) return void 0; - obj = obj[path[i]]; - } - return length ? obj : void 0; - } - - // Get the value of the (deep) property on `path` from `object`. - // If any property in `path` does not exist or if the value is - // `undefined`, return `defaultValue` instead. - // The `path` is normalized through `_.toPath`. - function get(object, path, defaultValue) { - var value = deepGet(object, toPath(path)); - return isUndefined(value) ? defaultValue : value; - } - - // Shortcut function for checking if an object has a given property directly on - // itself (in other words, not on a prototype). Unlike the internal `has` - // function, this public version can also traverse nested properties. - function has(obj, path) { - path = toPath(path); - var length = path.length; - for (var i = 0; i < length; i++) { - var key = path[i]; - if (!has$1(obj, key)) return false; - obj = obj[key]; - } - return !!length; - } - - // Keep the identity function around for default iteratees. - function identity(value) { - return value; - } - - // Returns a predicate for checking whether an object has a given set of - // `key:value` pairs. - function matcher(attrs) { - attrs = extendOwn({}, attrs); - return function(obj) { - return isMatch(obj, attrs); - }; - } - - // Creates a function that, when passed an object, will traverse that object’s - // properties down the given `path`, specified as an array of keys or indices. - function property(path) { - path = toPath(path); - return function(obj) { - return deepGet(obj, path); - }; - } - - // Internal function that returns an efficient (for current engines) version - // of the passed-in callback, to be repeatedly applied in other Underscore - // functions. - function optimizeCb(func, context, argCount) { - if (context === void 0) return func; - switch (argCount == null ? 3 : argCount) { - case 1: return function(value) { - return func.call(context, value); - }; - // The 2-argument case is omitted because we’re not using it. - case 3: return function(value, index, collection) { - return func.call(context, value, index, collection); - }; - case 4: return function(accumulator, value, index, collection) { - return func.call(context, accumulator, value, index, collection); - }; - } - return function() { - return func.apply(context, arguments); - }; - } - - // An internal function to generate callbacks that can be applied to each - // element in a collection, returning the desired result — either `_.identity`, - // an arbitrary callback, a property matcher, or a property accessor. - function baseIteratee(value, context, argCount) { - if (value == null) return identity; - if (isFunction$1(value)) return optimizeCb(value, context, argCount); - if (isObject(value) && !isArray(value)) return matcher(value); - return property(value); - } - - // External wrapper for our callback generator. Users may customize - // `_.iteratee` if they want additional predicate/iteratee shorthand styles. - // This abstraction hides the internal-only `argCount` argument. - function iteratee(value, context) { - return baseIteratee(value, context, Infinity); - } - _$1.iteratee = iteratee; - - // The function we call internally to generate a callback. It invokes - // `_.iteratee` if overridden, otherwise `baseIteratee`. - function cb(value, context, argCount) { - if (_$1.iteratee !== iteratee) return _$1.iteratee(value, context); - return baseIteratee(value, context, argCount); - } - - // Returns the results of applying the `iteratee` to each element of `obj`. - // In contrast to `_.map` it returns an object. - function mapObject(obj, iteratee, context) { - iteratee = cb(iteratee, context); - var _keys = keys(obj), - length = _keys.length, - results = {}; - for (var index = 0; index < length; index++) { - var currentKey = _keys[index]; - results[currentKey] = iteratee(obj[currentKey], currentKey, obj); - } - return results; - } - - // Predicate-generating function. Often useful outside of Underscore. - function noop(){} - - // Generates a function for a given object that returns a given property. - function propertyOf(obj) { - if (obj == null) return noop; - return function(path) { - return get(obj, path); - }; - } - - // Run a function **n** times. - function times(n, iteratee, context) { - var accum = Array(Math.max(0, n)); - iteratee = optimizeCb(iteratee, context, 1); - for (var i = 0; i < n; i++) accum[i] = iteratee(i); - return accum; - } - - // Return a random integer between `min` and `max` (inclusive). - function random(min, max) { - if (max == null) { - max = min; - min = 0; - } - return min + Math.floor(Math.random() * (max - min + 1)); - } - - // A (possibly faster) way to get the current timestamp as an integer. - var now = Date.now || function() { - return new Date().getTime(); - }; - - // Internal helper to generate functions for escaping and unescaping strings - // to/from HTML interpolation. - function createEscaper(map) { - var escaper = function(match) { - return map[match]; - }; - // Regexes for identifying a key that needs to be escaped. - var source = '(?:' + keys(map).join('|') + ')'; - var testRegexp = RegExp(source); - var replaceRegexp = RegExp(source, 'g'); - return function(string) { - string = string == null ? '' : '' + string; - return testRegexp.test(string) ? string.replace(replaceRegexp, escaper) : string; - }; - } - - // Internal list of HTML entities for escaping. - var escapeMap = { - '&': '&', - '<': '<', - '>': '>', - '"': '"', - "'": ''', - '`': '`' - }; - - // Function for escaping strings to HTML interpolation. - var _escape = createEscaper(escapeMap); - - // Internal list of HTML entities for unescaping. - var unescapeMap = invert(escapeMap); - - // Function for unescaping strings from HTML interpolation. - var _unescape = createEscaper(unescapeMap); - - // By default, Underscore uses ERB-style template delimiters. Change the - // following template settings to use alternative delimiters. - var templateSettings = _$1.templateSettings = { - evaluate: /<%([\s\S]+?)%>/g, - interpolate: /<%=([\s\S]+?)%>/g, - escape: /<%-([\s\S]+?)%>/g - }; - - // When customizing `_.templateSettings`, if you don't want to define an - // interpolation, evaluation or escaping regex, we need one that is - // guaranteed not to match. - var noMatch = /(.)^/; - - // Certain characters need to be escaped so that they can be put into a - // string literal. - var escapes = { - "'": "'", - '\\': '\\', - '\r': 'r', - '\n': 'n', - '\u2028': 'u2028', - '\u2029': 'u2029' - }; - - var escapeRegExp = /\\|'|\r|\n|\u2028|\u2029/g; - - function escapeChar(match) { - return '\\' + escapes[match]; - } - - // In order to prevent third-party code injection through - // `_.templateSettings.variable`, we test it against the following regular - // expression. It is intentionally a bit more liberal than just matching valid - // identifiers, but still prevents possible loopholes through defaults or - // destructuring assignment. - var bareIdentifier = /^\s*(\w|\$)+\s*$/; - - // JavaScript micro-templating, similar to John Resig's implementation. - // Underscore templating handles arbitrary delimiters, preserves whitespace, - // and correctly escapes quotes within interpolated code. - // NB: `oldSettings` only exists for backwards compatibility. - function template(text, settings, oldSettings) { - if (!settings && oldSettings) settings = oldSettings; - settings = defaults({}, settings, _$1.templateSettings); - - // Combine delimiters into one regular expression via alternation. - var matcher = RegExp([ - (settings.escape || noMatch).source, - (settings.interpolate || noMatch).source, - (settings.evaluate || noMatch).source - ].join('|') + '|$', 'g'); - - // Compile the template source, escaping string literals appropriately. - var index = 0; - var source = "__p+='"; - text.replace(matcher, function(match, escape, interpolate, evaluate, offset) { - source += text.slice(index, offset).replace(escapeRegExp, escapeChar); - index = offset + match.length; - - if (escape) { - source += "'+\n((__t=(" + escape + "))==null?'':_.escape(__t))+\n'"; - } else if (interpolate) { - source += "'+\n((__t=(" + interpolate + "))==null?'':__t)+\n'"; - } else if (evaluate) { - source += "';\n" + evaluate + "\n__p+='"; - } - - // Adobe VMs need the match returned to produce the correct offset. - return match; - }); - source += "';\n"; - - var argument = settings.variable; - if (argument) { - // Insure against third-party code injection. (CVE-2021-23358) - if (!bareIdentifier.test(argument)) throw new Error( - 'variable is not a bare identifier: ' + argument - ); - } else { - // If a variable is not specified, place data values in local scope. - source = 'with(obj||{}){\n' + source + '}\n'; - argument = 'obj'; - } - - source = "var __t,__p='',__j=Array.prototype.join," + - "print=function(){__p+=__j.call(arguments,'');};\n" + - source + 'return __p;\n'; - - var render; - try { - render = new Function(argument, '_', source); - } catch (e) { - e.source = source; - throw e; - } - - var template = function(data) { - return render.call(this, data, _$1); - }; - - // Provide the compiled source as a convenience for precompilation. - template.source = 'function(' + argument + '){\n' + source + '}'; - - return template; - } - - // Traverses the children of `obj` along `path`. If a child is a function, it - // is invoked with its parent as context. Returns the value of the final - // child, or `fallback` if any child is undefined. - function result(obj, path, fallback) { - path = toPath(path); - var length = path.length; - if (!length) { - return isFunction$1(fallback) ? fallback.call(obj) : fallback; - } - for (var i = 0; i < length; i++) { - var prop = obj == null ? void 0 : obj[path[i]]; - if (prop === void 0) { - prop = fallback; - i = length; // Ensure we don't continue iterating. - } - obj = isFunction$1(prop) ? prop.call(obj) : prop; - } - return obj; - } - - // Generate a unique integer id (unique within the entire client session). - // Useful for temporary DOM ids. - var idCounter = 0; - function uniqueId(prefix) { - var id = ++idCounter + ''; - return prefix ? prefix + id : id; - } - - // Start chaining a wrapped Underscore object. - function chain(obj) { - var instance = _$1(obj); - instance._chain = true; - return instance; - } - - // Internal function to execute `sourceFunc` bound to `context` with optional - // `args`. Determines whether to execute a function as a constructor or as a - // normal function. - function executeBound(sourceFunc, boundFunc, context, callingContext, args) { - if (!(callingContext instanceof boundFunc)) return sourceFunc.apply(context, args); - var self = baseCreate(sourceFunc.prototype); - var result = sourceFunc.apply(self, args); - if (isObject(result)) return result; - return self; - } - - // Partially apply a function by creating a version that has had some of its - // arguments pre-filled, without changing its dynamic `this` context. `_` acts - // as a placeholder by default, allowing any combination of arguments to be - // pre-filled. Set `_.partial.placeholder` for a custom placeholder argument. - var partial = restArguments(function(func, boundArgs) { - var placeholder = partial.placeholder; - var bound = function() { - var position = 0, length = boundArgs.length; - var args = Array(length); - for (var i = 0; i < length; i++) { - args[i] = boundArgs[i] === placeholder ? arguments[position++] : boundArgs[i]; - } - while (position < arguments.length) args.push(arguments[position++]); - return executeBound(func, bound, this, this, args); - }; - return bound; - }); - - partial.placeholder = _$1; - - // Create a function bound to a given object (assigning `this`, and arguments, - // optionally). - var bind = restArguments(function(func, context, args) { - if (!isFunction$1(func)) throw new TypeError('Bind must be called on a function'); - var bound = restArguments(function(callArgs) { - return executeBound(func, bound, context, this, args.concat(callArgs)); - }); - return bound; - }); - - // Internal helper for collection methods to determine whether a collection - // should be iterated as an array or as an object. - // Related: https://people.mozilla.org/~jorendorff/es6-draft.html#sec-tolength - // Avoids a very nasty iOS 8 JIT bug on ARM-64. #2094 - var isArrayLike = createSizePropertyCheck(getLength); - - // Internal implementation of a recursive `flatten` function. - function flatten$1(input, depth, strict, output) { - output = output || []; - if (!depth && depth !== 0) { - depth = Infinity; - } else if (depth <= 0) { - return output.concat(input); - } - var idx = output.length; - for (var i = 0, length = getLength(input); i < length; i++) { - var value = input[i]; - if (isArrayLike(value) && (isArray(value) || isArguments$1(value))) { - // Flatten current level of array or arguments object. - if (depth > 1) { - flatten$1(value, depth - 1, strict, output); - idx = output.length; - } else { - var j = 0, len = value.length; - while (j < len) output[idx++] = value[j++]; - } - } else if (!strict) { - output[idx++] = value; - } - } - return output; - } - - // Bind a number of an object's methods to that object. Remaining arguments - // are the method names to be bound. Useful for ensuring that all callbacks - // defined on an object belong to it. - var bindAll = restArguments(function(obj, keys) { - keys = flatten$1(keys, false, false); - var index = keys.length; - if (index < 1) throw new Error('bindAll must be passed function names'); - while (index--) { - var key = keys[index]; - obj[key] = bind(obj[key], obj); - } - return obj; - }); - - // Memoize an expensive function by storing its results. - function memoize(func, hasher) { - var memoize = function(key) { - var cache = memoize.cache; - var address = '' + (hasher ? hasher.apply(this, arguments) : key); - if (!has$1(cache, address)) cache[address] = func.apply(this, arguments); - return cache[address]; - }; - memoize.cache = {}; - return memoize; - } - - // Delays a function for the given number of milliseconds, and then calls - // it with the arguments supplied. - var delay = restArguments(function(func, wait, args) { - return setTimeout(function() { - return func.apply(null, args); - }, wait); - }); - - // Defers a function, scheduling it to run after the current call stack has - // cleared. - var defer = partial(delay, _$1, 1); - - // Returns a function, that, when invoked, will only be triggered at most once - // during a given window of time. Normally, the throttled function will run - // as much as it can, without ever going more than once per `wait` duration; - // but if you'd like to disable the execution on the leading edge, pass - // `{leading: false}`. To disable execution on the trailing edge, ditto. - function throttle(func, wait, options) { - var timeout, context, args, result; - var previous = 0; - if (!options) options = {}; - - var later = function() { - previous = options.leading === false ? 0 : now(); - timeout = null; - result = func.apply(context, args); - if (!timeout) context = args = null; - }; - - var throttled = function() { - var _now = now(); - if (!previous && options.leading === false) previous = _now; - var remaining = wait - (_now - previous); - context = this; - args = arguments; - if (remaining <= 0 || remaining > wait) { - if (timeout) { - clearTimeout(timeout); - timeout = null; - } - previous = _now; - result = func.apply(context, args); - if (!timeout) context = args = null; - } else if (!timeout && options.trailing !== false) { - timeout = setTimeout(later, remaining); - } - return result; - }; - - throttled.cancel = function() { - clearTimeout(timeout); - previous = 0; - timeout = context = args = null; - }; - - return throttled; - } - - // When a sequence of calls of the returned function ends, the argument - // function is triggered. The end of a sequence is defined by the `wait` - // parameter. If `immediate` is passed, the argument function will be - // triggered at the beginning of the sequence instead of at the end. - function debounce(func, wait, immediate) { - var timeout, previous, args, result, context; - - var later = function() { - var passed = now() - previous; - if (wait > passed) { - timeout = setTimeout(later, wait - passed); - } else { - timeout = null; - if (!immediate) result = func.apply(context, args); - // This check is needed because `func` can recursively invoke `debounced`. - if (!timeout) args = context = null; - } - }; - - var debounced = restArguments(function(_args) { - context = this; - args = _args; - previous = now(); - if (!timeout) { - timeout = setTimeout(later, wait); - if (immediate) result = func.apply(context, args); - } - return result; - }); - - debounced.cancel = function() { - clearTimeout(timeout); - timeout = args = context = null; - }; - - return debounced; - } - - // Returns the first function passed as an argument to the second, - // allowing you to adjust arguments, run code before and after, and - // conditionally execute the original function. - function wrap(func, wrapper) { - return partial(wrapper, func); - } - - // Returns a negated version of the passed-in predicate. - function negate(predicate) { - return function() { - return !predicate.apply(this, arguments); - }; - } - - // Returns a function that is the composition of a list of functions, each - // consuming the return value of the function that follows. - function compose() { - var args = arguments; - var start = args.length - 1; - return function() { - var i = start; - var result = args[start].apply(this, arguments); - while (i--) result = args[i].call(this, result); - return result; - }; - } - - // Returns a function that will only be executed on and after the Nth call. - function after(times, func) { - return function() { - if (--times < 1) { - return func.apply(this, arguments); - } - }; - } - - // Returns a function that will only be executed up to (but not including) the - // Nth call. - function before(times, func) { - var memo; - return function() { - if (--times > 0) { - memo = func.apply(this, arguments); - } - if (times <= 1) func = null; - return memo; - }; - } - - // Returns a function that will be executed at most one time, no matter how - // often you call it. Useful for lazy initialization. - var once = partial(before, 2); - - // Returns the first key on an object that passes a truth test. - function findKey(obj, predicate, context) { - predicate = cb(predicate, context); - var _keys = keys(obj), key; - for (var i = 0, length = _keys.length; i < length; i++) { - key = _keys[i]; - if (predicate(obj[key], key, obj)) return key; - } - } - - // Internal function to generate `_.findIndex` and `_.findLastIndex`. - function createPredicateIndexFinder(dir) { - return function(array, predicate, context) { - predicate = cb(predicate, context); - var length = getLength(array); - var index = dir > 0 ? 0 : length - 1; - for (; index >= 0 && index < length; index += dir) { - if (predicate(array[index], index, array)) return index; - } - return -1; - }; - } - - // Returns the first index on an array-like that passes a truth test. - var findIndex = createPredicateIndexFinder(1); - - // Returns the last index on an array-like that passes a truth test. - var findLastIndex = createPredicateIndexFinder(-1); - - // Use a comparator function to figure out the smallest index at which - // an object should be inserted so as to maintain order. Uses binary search. - function sortedIndex(array, obj, iteratee, context) { - iteratee = cb(iteratee, context, 1); - var value = iteratee(obj); - var low = 0, high = getLength(array); - while (low < high) { - var mid = Math.floor((low + high) / 2); - if (iteratee(array[mid]) < value) low = mid + 1; else high = mid; - } - return low; - } - - // Internal function to generate the `_.indexOf` and `_.lastIndexOf` functions. - function createIndexFinder(dir, predicateFind, sortedIndex) { - return function(array, item, idx) { - var i = 0, length = getLength(array); - if (typeof idx == 'number') { - if (dir > 0) { - i = idx >= 0 ? idx : Math.max(idx + length, i); - } else { - length = idx >= 0 ? Math.min(idx + 1, length) : idx + length + 1; - } - } else if (sortedIndex && idx && length) { - idx = sortedIndex(array, item); - return array[idx] === item ? idx : -1; - } - if (item !== item) { - idx = predicateFind(slice.call(array, i, length), isNaN$1); - return idx >= 0 ? idx + i : -1; - } - for (idx = dir > 0 ? i : length - 1; idx >= 0 && idx < length; idx += dir) { - if (array[idx] === item) return idx; - } - return -1; - }; - } - - // Return the position of the first occurrence of an item in an array, - // or -1 if the item is not included in the array. - // If the array is large and already in sort order, pass `true` - // for **isSorted** to use binary search. - var indexOf = createIndexFinder(1, findIndex, sortedIndex); - - // Return the position of the last occurrence of an item in an array, - // or -1 if the item is not included in the array. - var lastIndexOf = createIndexFinder(-1, findLastIndex); - - // Return the first value which passes a truth test. - function find(obj, predicate, context) { - var keyFinder = isArrayLike(obj) ? findIndex : findKey; - var key = keyFinder(obj, predicate, context); - if (key !== void 0 && key !== -1) return obj[key]; - } - - // Convenience version of a common use case of `_.find`: getting the first - // object containing specific `key:value` pairs. - function findWhere(obj, attrs) { - return find(obj, matcher(attrs)); - } - - // The cornerstone for collection functions, an `each` - // implementation, aka `forEach`. - // Handles raw objects in addition to array-likes. Treats all - // sparse array-likes as if they were dense. - function each(obj, iteratee, context) { - iteratee = optimizeCb(iteratee, context); - var i, length; - if (isArrayLike(obj)) { - for (i = 0, length = obj.length; i < length; i++) { - iteratee(obj[i], i, obj); - } - } else { - var _keys = keys(obj); - for (i = 0, length = _keys.length; i < length; i++) { - iteratee(obj[_keys[i]], _keys[i], obj); - } - } - return obj; - } - - // Return the results of applying the iteratee to each element. - function map(obj, iteratee, context) { - iteratee = cb(iteratee, context); - var _keys = !isArrayLike(obj) && keys(obj), - length = (_keys || obj).length, - results = Array(length); - for (var index = 0; index < length; index++) { - var currentKey = _keys ? _keys[index] : index; - results[index] = iteratee(obj[currentKey], currentKey, obj); - } - return results; - } - - // Internal helper to create a reducing function, iterating left or right. - function createReduce(dir) { - // Wrap code that reassigns argument variables in a separate function than - // the one that accesses `arguments.length` to avoid a perf hit. (#1991) - var reducer = function(obj, iteratee, memo, initial) { - var _keys = !isArrayLike(obj) && keys(obj), - length = (_keys || obj).length, - index = dir > 0 ? 0 : length - 1; - if (!initial) { - memo = obj[_keys ? _keys[index] : index]; - index += dir; - } - for (; index >= 0 && index < length; index += dir) { - var currentKey = _keys ? _keys[index] : index; - memo = iteratee(memo, obj[currentKey], currentKey, obj); - } - return memo; - }; - - return function(obj, iteratee, memo, context) { - var initial = arguments.length >= 3; - return reducer(obj, optimizeCb(iteratee, context, 4), memo, initial); - }; - } - - // **Reduce** builds up a single result from a list of values, aka `inject`, - // or `foldl`. - var reduce = createReduce(1); - - // The right-associative version of reduce, also known as `foldr`. - var reduceRight = createReduce(-1); - - // Return all the elements that pass a truth test. - function filter(obj, predicate, context) { - var results = []; - predicate = cb(predicate, context); - each(obj, function(value, index, list) { - if (predicate(value, index, list)) results.push(value); - }); - return results; - } - - // Return all the elements for which a truth test fails. - function reject(obj, predicate, context) { - return filter(obj, negate(cb(predicate)), context); - } - - // Determine whether all of the elements pass a truth test. - function every(obj, predicate, context) { - predicate = cb(predicate, context); - var _keys = !isArrayLike(obj) && keys(obj), - length = (_keys || obj).length; - for (var index = 0; index < length; index++) { - var currentKey = _keys ? _keys[index] : index; - if (!predicate(obj[currentKey], currentKey, obj)) return false; - } - return true; - } - - // Determine if at least one element in the object passes a truth test. - function some(obj, predicate, context) { - predicate = cb(predicate, context); - var _keys = !isArrayLike(obj) && keys(obj), - length = (_keys || obj).length; - for (var index = 0; index < length; index++) { - var currentKey = _keys ? _keys[index] : index; - if (predicate(obj[currentKey], currentKey, obj)) return true; - } - return false; - } - - // Determine if the array or object contains a given item (using `===`). - function contains(obj, item, fromIndex, guard) { - if (!isArrayLike(obj)) obj = values(obj); - if (typeof fromIndex != 'number' || guard) fromIndex = 0; - return indexOf(obj, item, fromIndex) >= 0; - } - - // Invoke a method (with arguments) on every item in a collection. - var invoke = restArguments(function(obj, path, args) { - var contextPath, func; - if (isFunction$1(path)) { - func = path; - } else { - path = toPath(path); - contextPath = path.slice(0, -1); - path = path[path.length - 1]; - } - return map(obj, function(context) { - var method = func; - if (!method) { - if (contextPath && contextPath.length) { - context = deepGet(context, contextPath); - } - if (context == null) return void 0; - method = context[path]; - } - return method == null ? method : method.apply(context, args); - }); - }); - - // Convenience version of a common use case of `_.map`: fetching a property. - function pluck(obj, key) { - return map(obj, property(key)); - } - - // Convenience version of a common use case of `_.filter`: selecting only - // objects containing specific `key:value` pairs. - function where(obj, attrs) { - return filter(obj, matcher(attrs)); - } - - // Return the maximum element (or element-based computation). - function max(obj, iteratee, context) { - var result = -Infinity, lastComputed = -Infinity, - value, computed; - if (iteratee == null || typeof iteratee == 'number' && typeof obj[0] != 'object' && obj != null) { - obj = isArrayLike(obj) ? obj : values(obj); - for (var i = 0, length = obj.length; i < length; i++) { - value = obj[i]; - if (value != null && value > result) { - result = value; - } - } - } else { - iteratee = cb(iteratee, context); - each(obj, function(v, index, list) { - computed = iteratee(v, index, list); - if (computed > lastComputed || computed === -Infinity && result === -Infinity) { - result = v; - lastComputed = computed; - } - }); - } - return result; - } - - // Return the minimum element (or element-based computation). - function min(obj, iteratee, context) { - var result = Infinity, lastComputed = Infinity, - value, computed; - if (iteratee == null || typeof iteratee == 'number' && typeof obj[0] != 'object' && obj != null) { - obj = isArrayLike(obj) ? obj : values(obj); - for (var i = 0, length = obj.length; i < length; i++) { - value = obj[i]; - if (value != null && value < result) { - result = value; - } - } - } else { - iteratee = cb(iteratee, context); - each(obj, function(v, index, list) { - computed = iteratee(v, index, list); - if (computed < lastComputed || computed === Infinity && result === Infinity) { - result = v; - lastComputed = computed; - } - }); - } - return result; - } - - // Sample **n** random values from a collection using the modern version of the - // [Fisher-Yates shuffle](https://en.wikipedia.org/wiki/Fisher–Yates_shuffle). - // If **n** is not specified, returns a single random element. - // The internal `guard` argument allows it to work with `_.map`. - function sample(obj, n, guard) { - if (n == null || guard) { - if (!isArrayLike(obj)) obj = values(obj); - return obj[random(obj.length - 1)]; - } - var sample = isArrayLike(obj) ? clone(obj) : values(obj); - var length = getLength(sample); - n = Math.max(Math.min(n, length), 0); - var last = length - 1; - for (var index = 0; index < n; index++) { - var rand = random(index, last); - var temp = sample[index]; - sample[index] = sample[rand]; - sample[rand] = temp; - } - return sample.slice(0, n); - } - - // Shuffle a collection. - function shuffle(obj) { - return sample(obj, Infinity); - } - - // Sort the object's values by a criterion produced by an iteratee. - function sortBy(obj, iteratee, context) { - var index = 0; - iteratee = cb(iteratee, context); - return pluck(map(obj, function(value, key, list) { - return { - value: value, - index: index++, - criteria: iteratee(value, key, list) - }; - }).sort(function(left, right) { - var a = left.criteria; - var b = right.criteria; - if (a !== b) { - if (a > b || a === void 0) return 1; - if (a < b || b === void 0) return -1; - } - return left.index - right.index; - }), 'value'); - } - - // An internal function used for aggregate "group by" operations. - function group(behavior, partition) { - return function(obj, iteratee, context) { - var result = partition ? [[], []] : {}; - iteratee = cb(iteratee, context); - each(obj, function(value, index) { - var key = iteratee(value, index, obj); - behavior(result, value, key); - }); - return result; - }; - } - - // Groups the object's values by a criterion. Pass either a string attribute - // to group by, or a function that returns the criterion. - var groupBy = group(function(result, value, key) { - if (has$1(result, key)) result[key].push(value); else result[key] = [value]; - }); - - // Indexes the object's values by a criterion, similar to `_.groupBy`, but for - // when you know that your index values will be unique. - var indexBy = group(function(result, value, key) { - result[key] = value; - }); - - // Counts instances of an object that group by a certain criterion. Pass - // either a string attribute to count by, or a function that returns the - // criterion. - var countBy = group(function(result, value, key) { - if (has$1(result, key)) result[key]++; else result[key] = 1; - }); - - // Split a collection into two arrays: one whose elements all pass the given - // truth test, and one whose elements all do not pass the truth test. - var partition = group(function(result, value, pass) { - result[pass ? 0 : 1].push(value); - }, true); - - // Safely create a real, live array from anything iterable. - var reStrSymbol = /[^\ud800-\udfff]|[\ud800-\udbff][\udc00-\udfff]|[\ud800-\udfff]/g; - function toArray(obj) { - if (!obj) return []; - if (isArray(obj)) return slice.call(obj); - if (isString(obj)) { - // Keep surrogate pair characters together. - return obj.match(reStrSymbol); - } - if (isArrayLike(obj)) return map(obj, identity); - return values(obj); - } - - // Return the number of elements in a collection. - function size(obj) { - if (obj == null) return 0; - return isArrayLike(obj) ? obj.length : keys(obj).length; - } - - // Internal `_.pick` helper function to determine whether `key` is an enumerable - // property name of `obj`. - function keyInObj(value, key, obj) { - return key in obj; - } - - // Return a copy of the object only containing the allowed properties. - var pick = restArguments(function(obj, keys) { - var result = {}, iteratee = keys[0]; - if (obj == null) return result; - if (isFunction$1(iteratee)) { - if (keys.length > 1) iteratee = optimizeCb(iteratee, keys[1]); - keys = allKeys(obj); - } else { - iteratee = keyInObj; - keys = flatten$1(keys, false, false); - obj = Object(obj); - } - for (var i = 0, length = keys.length; i < length; i++) { - var key = keys[i]; - var value = obj[key]; - if (iteratee(value, key, obj)) result[key] = value; - } - return result; - }); - - // Return a copy of the object without the disallowed properties. - var omit = restArguments(function(obj, keys) { - var iteratee = keys[0], context; - if (isFunction$1(iteratee)) { - iteratee = negate(iteratee); - if (keys.length > 1) context = keys[1]; - } else { - keys = map(flatten$1(keys, false, false), String); - iteratee = function(value, key) { - return !contains(keys, key); - }; - } - return pick(obj, iteratee, context); - }); - - // Returns everything but the last entry of the array. Especially useful on - // the arguments object. Passing **n** will return all the values in - // the array, excluding the last N. - function initial(array, n, guard) { - return slice.call(array, 0, Math.max(0, array.length - (n == null || guard ? 1 : n))); - } - - // Get the first element of an array. Passing **n** will return the first N - // values in the array. The **guard** check allows it to work with `_.map`. - function first(array, n, guard) { - if (array == null || array.length < 1) return n == null || guard ? void 0 : []; - if (n == null || guard) return array[0]; - return initial(array, array.length - n); - } - - // Returns everything but the first entry of the `array`. Especially useful on - // the `arguments` object. Passing an **n** will return the rest N values in the - // `array`. - function rest(array, n, guard) { - return slice.call(array, n == null || guard ? 1 : n); - } - - // Get the last element of an array. Passing **n** will return the last N - // values in the array. - function last(array, n, guard) { - if (array == null || array.length < 1) return n == null || guard ? void 0 : []; - if (n == null || guard) return array[array.length - 1]; - return rest(array, Math.max(0, array.length - n)); - } - - // Trim out all falsy values from an array. - function compact(array) { - return filter(array, Boolean); - } - - // Flatten out an array, either recursively (by default), or up to `depth`. - // Passing `true` or `false` as `depth` means `1` or `Infinity`, respectively. - function flatten(array, depth) { - return flatten$1(array, depth, false); - } - - // Take the difference between one array and a number of other arrays. - // Only the elements present in just the first array will remain. - var difference = restArguments(function(array, rest) { - rest = flatten$1(rest, true, true); - return filter(array, function(value){ - return !contains(rest, value); - }); - }); - - // Return a version of the array that does not contain the specified value(s). - var without = restArguments(function(array, otherArrays) { - return difference(array, otherArrays); - }); - - // Produce a duplicate-free version of the array. If the array has already - // been sorted, you have the option of using a faster algorithm. - // The faster algorithm will not work with an iteratee if the iteratee - // is not a one-to-one function, so providing an iteratee will disable - // the faster algorithm. - function uniq(array, isSorted, iteratee, context) { - if (!isBoolean(isSorted)) { - context = iteratee; - iteratee = isSorted; - isSorted = false; - } - if (iteratee != null) iteratee = cb(iteratee, context); - var result = []; - var seen = []; - for (var i = 0, length = getLength(array); i < length; i++) { - var value = array[i], - computed = iteratee ? iteratee(value, i, array) : value; - if (isSorted && !iteratee) { - if (!i || seen !== computed) result.push(value); - seen = computed; - } else if (iteratee) { - if (!contains(seen, computed)) { - seen.push(computed); - result.push(value); - } - } else if (!contains(result, value)) { - result.push(value); - } - } - return result; - } - - // Produce an array that contains the union: each distinct element from all of - // the passed-in arrays. - var union = restArguments(function(arrays) { - return uniq(flatten$1(arrays, true, true)); - }); - - // Produce an array that contains every item shared between all the - // passed-in arrays. - function intersection(array) { - var result = []; - var argsLength = arguments.length; - for (var i = 0, length = getLength(array); i < length; i++) { - var item = array[i]; - if (contains(result, item)) continue; - var j; - for (j = 1; j < argsLength; j++) { - if (!contains(arguments[j], item)) break; - } - if (j === argsLength) result.push(item); - } - return result; - } - - // Complement of zip. 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    +

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    • has_prior_net_structure (PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath property) +
    • has_prior_net_structure() (PyCTBN.PyCTBN.structure_graph.sample_path.SamplePath property)
    • HillClimbing (class in PyCTBN.PyCTBN.optimizers.hill_climbing_search)
      • @@ -459,8 +448,6 @@

      M

        -
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      • variables() (PyCTBN.PyCTBN.structure_graph.network_generator.NetworkGenerator property)
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          Python Module Index

          - e | p
          - - - - - @@ -300,16 +287,36 @@ + + + + + + + + + + + + + + + + + +
           
          - e
          - example -
           
          p
              PyCTBN.tests.estimators.test_parameters_estimator
              + PyCTBN.tests.estimators.test_structure_constraint_based_estimator +
              PyCTBN.tests.estimators.test_structure_estimator
              + PyCTBN.tests.estimators.test_structure_score_based_estimator +
              PyCTBN.tests.optimizers
              + PyCTBN.tests.optimizers.test_hill_climbing_search +
              + PyCTBN.tests.optimizers.test_tabu_search +
              @@ -320,6 +327,11 @@     PyCTBN.tests.structure_graph.test_cim
              + PyCTBN.tests.structure_graph.test_networkgenerator +
              @@ -345,6 +357,11 @@     PyCTBN.tests.structure_graph.test_trajectory
              + PyCTBN.tests.structure_graph.test_trajectorygenerator +
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