Old engine for Continuous Time Bayesian Networks. Superseded by reCTBN. 🐍
https://github.com/madlabunimib/PyCTBN
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106 lines
2.9 KiB
106 lines
2.9 KiB
4 years ago
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from io import BytesIO
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import os
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import numpy as np
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import pytest
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from pandas import DataFrame, date_range, read_csv
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import pandas._testing as tm
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from pandas.util import _test_decorators as td
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@td.skip_if_no("gcsfs")
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def test_read_csv_gcs(monkeypatch):
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from fsspec import AbstractFileSystem, registry
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registry.target.clear() # noqa # remove state
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df1 = DataFrame(
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{
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"int": [1, 3],
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"float": [2.0, np.nan],
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"str": ["t", "s"],
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"dt": date_range("2018-06-18", periods=2),
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}
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)
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class MockGCSFileSystem(AbstractFileSystem):
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def open(*args, **kwargs):
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return BytesIO(df1.to_csv(index=False).encode())
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monkeypatch.setattr("gcsfs.GCSFileSystem", MockGCSFileSystem)
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df2 = read_csv("gs://test/test.csv", parse_dates=["dt"])
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tm.assert_frame_equal(df1, df2)
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@td.skip_if_no("gcsfs")
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def test_to_csv_gcs(monkeypatch):
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from fsspec import AbstractFileSystem, registry
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registry.target.clear() # noqa # remove state
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df1 = DataFrame(
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{
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"int": [1, 3],
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"float": [2.0, np.nan],
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"str": ["t", "s"],
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"dt": date_range("2018-06-18", periods=2),
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}
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)
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s = BytesIO()
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s.close = lambda: True
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class MockGCSFileSystem(AbstractFileSystem):
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def open(*args, **kwargs):
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s.seek(0)
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return s
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monkeypatch.setattr("gcsfs.GCSFileSystem", MockGCSFileSystem)
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df1.to_csv("gs://test/test.csv", index=True)
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def mock_get_filepath_or_buffer(*args, **kwargs):
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return BytesIO(df1.to_csv(index=True).encode()), None, None, False
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monkeypatch.setattr(
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"pandas.io.common.get_filepath_or_buffer", mock_get_filepath_or_buffer
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)
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df2 = read_csv("gs://test/test.csv", parse_dates=["dt"], index_col=0)
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tm.assert_frame_equal(df1, df2)
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@td.skip_if_no("fastparquet")
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@td.skip_if_no("gcsfs")
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def test_to_parquet_gcs_new_file(monkeypatch, tmpdir):
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"""Regression test for writing to a not-yet-existent GCS Parquet file."""
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from fsspec import AbstractFileSystem, registry
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registry.target.clear() # noqa # remove state
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df1 = DataFrame(
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{
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"int": [1, 3],
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"float": [2.0, np.nan],
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"str": ["t", "s"],
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"dt": date_range("2018-06-18", periods=2),
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}
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)
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class MockGCSFileSystem(AbstractFileSystem):
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def open(self, path, mode="r", *args):
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if "w" not in mode:
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raise FileNotFoundError
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return open(os.path.join(tmpdir, "test.parquet"), mode)
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monkeypatch.setattr("gcsfs.GCSFileSystem", MockGCSFileSystem)
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df1.to_parquet(
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"gs://test/test.csv", index=True, engine="fastparquet", compression=None
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)
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@td.skip_if_installed("gcsfs")
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def test_gcs_not_present_exception():
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with pytest.raises(ImportError) as e:
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read_csv("gs://test/test.csv")
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assert "gcsfs library is required" in str(e.value)
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