Old engine for Continuous Time Bayesian Networks. Superseded by reCTBN. 🐍
https://github.com/madlabunimib/PyCTBN
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245 lines
5.8 KiB
245 lines
5.8 KiB
4 years ago
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import numpy as np
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import pytest
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import pandas as pd
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import pandas._testing as tm
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# ------------------------------------------------------------------
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# Helper Functions
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def id_func(x):
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if isinstance(x, tuple):
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assert len(x) == 2
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return x[0].__name__ + "-" + str(x[1])
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else:
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return x.__name__
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# ------------------------------------------------------------------
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@pytest.fixture(
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params=[
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("foo", None, None),
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("Egon", "Venkman", None),
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("NCC1701D", "NCC1701D", "NCC1701D"),
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]
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)
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def names(request):
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"""
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A 3-tuple of names, the first two for operands, the last for a result.
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"""
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return request.param
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@pytest.fixture(params=[1, np.array(1, dtype=np.int64)])
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def one(request):
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"""
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Several variants of integer value 1. The zero-dim integer array
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behaves like an integer.
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This fixture can be used to check that datetimelike indexes handle
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addition and subtraction of integers and zero-dimensional arrays
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of integers.
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Examples
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--------
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>>> dti = pd.date_range('2016-01-01', periods=2, freq='H')
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>>> dti
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DatetimeIndex(['2016-01-01 00:00:00', '2016-01-01 01:00:00'],
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dtype='datetime64[ns]', freq='H')
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>>> dti + one
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DatetimeIndex(['2016-01-01 01:00:00', '2016-01-01 02:00:00'],
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dtype='datetime64[ns]', freq='H')
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"""
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return request.param
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zeros = [
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box_cls([0] * 5, dtype=dtype)
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for box_cls in [pd.Index, np.array]
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for dtype in [np.int64, np.uint64, np.float64]
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]
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zeros.extend(
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[box_cls([-0.0] * 5, dtype=np.float64) for box_cls in [pd.Index, np.array]]
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)
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zeros.extend([np.array(0, dtype=dtype) for dtype in [np.int64, np.uint64, np.float64]])
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zeros.extend([np.array(-0.0, dtype=np.float64)])
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zeros.extend([0, 0.0, -0.0])
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@pytest.fixture(params=zeros)
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def zero(request):
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"""
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Several types of scalar zeros and length 5 vectors of zeros.
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This fixture can be used to check that numeric-dtype indexes handle
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division by any zero numeric-dtype.
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Uses vector of length 5 for broadcasting with `numeric_idx` fixture,
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which creates numeric-dtype vectors also of length 5.
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Examples
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--------
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>>> arr = pd.RangeIndex(5)
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>>> arr / zeros
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Float64Index([nan, inf, inf, inf, inf], dtype='float64')
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"""
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return request.param
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# ------------------------------------------------------------------
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# Vector Fixtures
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@pytest.fixture(
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params=[
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pd.Float64Index(np.arange(5, dtype="float64")),
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pd.Int64Index(np.arange(5, dtype="int64")),
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pd.UInt64Index(np.arange(5, dtype="uint64")),
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pd.RangeIndex(5),
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],
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ids=lambda x: type(x).__name__,
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)
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def numeric_idx(request):
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"""
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Several types of numeric-dtypes Index objects
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"""
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return request.param
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# ------------------------------------------------------------------
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# Scalar Fixtures
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@pytest.fixture(
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params=[
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pd.Timedelta("5m4s").to_pytimedelta(),
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pd.Timedelta("5m4s"),
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pd.Timedelta("5m4s").to_timedelta64(),
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],
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ids=lambda x: type(x).__name__,
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)
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def scalar_td(request):
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"""
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Several variants of Timedelta scalars representing 5 minutes and 4 seconds
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"""
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return request.param
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@pytest.fixture(
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params=[
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pd.offsets.Day(3),
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pd.offsets.Hour(72),
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pd.Timedelta(days=3).to_pytimedelta(),
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pd.Timedelta("72:00:00"),
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np.timedelta64(3, "D"),
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np.timedelta64(72, "h"),
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],
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ids=lambda x: type(x).__name__,
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)
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def three_days(request):
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"""
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Several timedelta-like and DateOffset objects that each represent
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a 3-day timedelta
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"""
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return request.param
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@pytest.fixture(
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params=[
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pd.offsets.Hour(2),
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pd.offsets.Minute(120),
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pd.Timedelta(hours=2).to_pytimedelta(),
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pd.Timedelta(seconds=2 * 3600),
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np.timedelta64(2, "h"),
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np.timedelta64(120, "m"),
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],
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ids=lambda x: type(x).__name__,
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)
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def two_hours(request):
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"""
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Several timedelta-like and DateOffset objects that each represent
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a 2-hour timedelta
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"""
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return request.param
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_common_mismatch = [
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pd.offsets.YearBegin(2),
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pd.offsets.MonthBegin(1),
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pd.offsets.Minute(),
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]
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@pytest.fixture(
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params=[
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pd.Timedelta(minutes=30).to_pytimedelta(),
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np.timedelta64(30, "s"),
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pd.Timedelta(seconds=30),
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]
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+ _common_mismatch
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)
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def not_hourly(request):
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"""
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Several timedelta-like and DateOffset instances that are _not_
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compatible with Hourly frequencies.
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"""
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return request.param
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@pytest.fixture(
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params=[
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np.timedelta64(4, "h"),
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pd.Timedelta(hours=23).to_pytimedelta(),
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pd.Timedelta("23:00:00"),
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]
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+ _common_mismatch
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)
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def not_daily(request):
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"""
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Several timedelta-like and DateOffset instances that are _not_
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compatible with Daily frequencies.
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"""
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return request.param
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@pytest.fixture(
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params=[
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np.timedelta64(365, "D"),
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pd.Timedelta(days=365).to_pytimedelta(),
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pd.Timedelta(days=365),
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]
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+ _common_mismatch
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)
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def mismatched_freq(request):
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"""
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Several timedelta-like and DateOffset instances that are _not_
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compatible with Monthly or Annual frequencies.
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"""
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return request.param
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# ------------------------------------------------------------------
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@pytest.fixture(params=[pd.Index, pd.Series, pd.DataFrame], ids=id_func)
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def box(request):
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"""
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Several array-like containers that should have effectively identical
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behavior with respect to arithmetic operations.
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"""
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return request.param
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@pytest.fixture(params=[pd.Index, pd.Series, pd.DataFrame, tm.to_array], ids=id_func)
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def box_with_array(request):
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"""
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Fixture to test behavior for Index, Series, DataFrame, and pandas Array
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classes
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"""
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return request.param
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# alias so we can use the same fixture for multiple parameters in a test
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box_with_array2 = box_with_array
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