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Old engine for Continuous Time Bayesian Networks. Superseded by reCTBN. 🐍 https://github.com/madlabunimib/PyCTBN
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PyCTBN/main_package/classes/structure_graph/sample_path.py

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import numpy as np
import pandas as pd
from .structure import Structure
from .trajectory import Trajectory
from ..utility.abstract_importer import AbstractImporter
class SamplePath(object):
"""Aggregates all the informations about the trajectories, the real structure of the sampled net and variables
cardinalites. Has the task of creating the objects ``Trajectory`` and ``Structure`` that will
contain the mentioned data.
:param importer: the Importer object which contains the imported and processed data
:type importer: AbstractImporter
:_trajectories: the ``Trajectory`` object that will contain all the concatenated trajectories
:_structure: the ``Structure`` Object that will contain all the structural infos about the net
:_total_variables_count: the number of variables in the net
"""
def __init__(self, importer: AbstractImporter):
"""Constructor Method
"""
self._importer = importer
if self._importer._df_variables is None or self._importer._concatenated_samples is None:
raise RuntimeError('The importer object has to contain the all processed data!')
if self._importer._df_variables.empty:
raise RuntimeError('The importer object has to contain the all processed data!')
if isinstance(self._importer._concatenated_samples, pd.DataFrame):
if self._importer._concatenated_samples.empty:
raise RuntimeError('The importer object has to contain the all processed data!')
if isinstance(self._importer._concatenated_samples, np.ndarray):
if self._importer._concatenated_samples.size == 0:
raise RuntimeError('The importer object has to contain the all processed data!')
self._trajectories = None
self._structure = None
self._total_variables_count = None
def build_trajectories(self) -> None:
"""Builds the Trajectory object that will contain all the trajectories.
Clears all the unused dataframes in ``_importer`` Object
"""
self._trajectories = \
Trajectory(self._importer.build_list_of_samples_array(self._importer.concatenated_samples),
len(self._importer.sorter) + 1)
self._importer.clear_concatenated_frame()
def build_structure(self) -> None:
"""
Builds the ``Structure`` object that aggregates all the infos about the net.
"""
if self._importer.sorter != self._importer.variables.iloc[:, 0].to_list():
raise RuntimeError("The Dataset columns order have to match the order of labels in the variables Frame!")
self._total_variables_count = len(self._importer.sorter)
labels = self._importer.variables.iloc[:, 0].to_list()
indxs = self._importer.variables.index.to_numpy()
vals = self._importer.variables.iloc[:, 1].to_numpy()
if self._importer.structure is None or self._importer.structure.empty:
edges = []
else:
edges = list(self._importer.structure.to_records(index=False))
self._structure = Structure(labels, indxs, vals, edges,
self._total_variables_count)
def clear_memory(self):
self._importer._raw_data = []
@property
def trajectories(self) -> Trajectory:
return self._trajectories
@property
def structure(self) -> Structure:
return self._structure
@property
def total_variables_count(self) -> int:
return self._total_variables_count
@property
def has_prior_net_structure(self) -> bool:
return bool(self._structure.edges)