Old engine for Continuous Time Bayesian Networks. Superseded by reCTBN. 🐍
https://github.com/madlabunimib/PyCTBN
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239 lines
8.0 KiB
239 lines
8.0 KiB
4 years ago
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"""distutils.file_util
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Utility functions for operating on single files.
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"""
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import os
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from distutils.errors import DistutilsFileError
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from distutils import log
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# for generating verbose output in 'copy_file()'
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_copy_action = { None: 'copying',
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'hard': 'hard linking',
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'sym': 'symbolically linking' }
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def _copy_file_contents(src, dst, buffer_size=16*1024):
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"""Copy the file 'src' to 'dst'; both must be filenames. Any error
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opening either file, reading from 'src', or writing to 'dst', raises
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DistutilsFileError. Data is read/written in chunks of 'buffer_size'
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bytes (default 16k). No attempt is made to handle anything apart from
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regular files.
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"""
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# Stolen from shutil module in the standard library, but with
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# custom error-handling added.
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fsrc = None
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fdst = None
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try:
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try:
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fsrc = open(src, 'rb')
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except OSError as e:
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raise DistutilsFileError("could not open '%s': %s" % (src, e.strerror))
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if os.path.exists(dst):
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try:
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os.unlink(dst)
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except OSError as e:
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raise DistutilsFileError(
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"could not delete '%s': %s" % (dst, e.strerror))
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try:
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fdst = open(dst, 'wb')
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except OSError as e:
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raise DistutilsFileError(
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"could not create '%s': %s" % (dst, e.strerror))
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while True:
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try:
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buf = fsrc.read(buffer_size)
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except OSError as e:
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raise DistutilsFileError(
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"could not read from '%s': %s" % (src, e.strerror))
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if not buf:
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break
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try:
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fdst.write(buf)
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except OSError as e:
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raise DistutilsFileError(
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"could not write to '%s': %s" % (dst, e.strerror))
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finally:
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if fdst:
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fdst.close()
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if fsrc:
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fsrc.close()
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def copy_file(src, dst, preserve_mode=1, preserve_times=1, update=0,
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link=None, verbose=1, dry_run=0):
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"""Copy a file 'src' to 'dst'. If 'dst' is a directory, then 'src' is
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copied there with the same name; otherwise, it must be a filename. (If
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the file exists, it will be ruthlessly clobbered.) If 'preserve_mode'
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is true (the default), the file's mode (type and permission bits, or
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whatever is analogous on the current platform) is copied. If
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'preserve_times' is true (the default), the last-modified and
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last-access times are copied as well. If 'update' is true, 'src' will
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only be copied if 'dst' does not exist, or if 'dst' does exist but is
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older than 'src'.
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'link' allows you to make hard links (os.link) or symbolic links
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(os.symlink) instead of copying: set it to "hard" or "sym"; if it is
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None (the default), files are copied. Don't set 'link' on systems that
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don't support it: 'copy_file()' doesn't check if hard or symbolic
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linking is available. If hardlink fails, falls back to
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_copy_file_contents().
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Under Mac OS, uses the native file copy function in macostools; on
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other systems, uses '_copy_file_contents()' to copy file contents.
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Return a tuple (dest_name, copied): 'dest_name' is the actual name of
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the output file, and 'copied' is true if the file was copied (or would
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have been copied, if 'dry_run' true).
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"""
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# XXX if the destination file already exists, we clobber it if
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# copying, but blow up if linking. Hmmm. And I don't know what
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# macostools.copyfile() does. Should definitely be consistent, and
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# should probably blow up if destination exists and we would be
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# changing it (ie. it's not already a hard/soft link to src OR
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# (not update) and (src newer than dst).
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from distutils.dep_util import newer
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from stat import ST_ATIME, ST_MTIME, ST_MODE, S_IMODE
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if not os.path.isfile(src):
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raise DistutilsFileError(
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"can't copy '%s': doesn't exist or not a regular file" % src)
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if os.path.isdir(dst):
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dir = dst
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dst = os.path.join(dst, os.path.basename(src))
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else:
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dir = os.path.dirname(dst)
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if update and not newer(src, dst):
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if verbose >= 1:
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log.debug("not copying %s (output up-to-date)", src)
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return (dst, 0)
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try:
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action = _copy_action[link]
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except KeyError:
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raise ValueError("invalid value '%s' for 'link' argument" % link)
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if verbose >= 1:
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if os.path.basename(dst) == os.path.basename(src):
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log.info("%s %s -> %s", action, src, dir)
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else:
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log.info("%s %s -> %s", action, src, dst)
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if dry_run:
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return (dst, 1)
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# If linking (hard or symbolic), use the appropriate system call
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# (Unix only, of course, but that's the caller's responsibility)
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elif link == 'hard':
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if not (os.path.exists(dst) and os.path.samefile(src, dst)):
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try:
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os.link(src, dst)
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return (dst, 1)
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except OSError:
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# If hard linking fails, fall back on copying file
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# (some special filesystems don't support hard linking
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# even under Unix, see issue #8876).
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pass
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elif link == 'sym':
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if not (os.path.exists(dst) and os.path.samefile(src, dst)):
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os.symlink(src, dst)
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return (dst, 1)
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# Otherwise (non-Mac, not linking), copy the file contents and
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# (optionally) copy the times and mode.
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_copy_file_contents(src, dst)
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if preserve_mode or preserve_times:
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st = os.stat(src)
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# According to David Ascher <da@ski.org>, utime() should be done
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# before chmod() (at least under NT).
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if preserve_times:
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os.utime(dst, (st[ST_ATIME], st[ST_MTIME]))
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if preserve_mode:
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os.chmod(dst, S_IMODE(st[ST_MODE]))
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return (dst, 1)
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# XXX I suspect this is Unix-specific -- need porting help!
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def move_file (src, dst,
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verbose=1,
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dry_run=0):
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"""Move a file 'src' to 'dst'. If 'dst' is a directory, the file will
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be moved into it with the same name; otherwise, 'src' is just renamed
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to 'dst'. Return the new full name of the file.
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Handles cross-device moves on Unix using 'copy_file()'. What about
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other systems???
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"""
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from os.path import exists, isfile, isdir, basename, dirname
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import errno
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if verbose >= 1:
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log.info("moving %s -> %s", src, dst)
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if dry_run:
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return dst
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if not isfile(src):
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raise DistutilsFileError("can't move '%s': not a regular file" % src)
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if isdir(dst):
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dst = os.path.join(dst, basename(src))
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elif exists(dst):
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raise DistutilsFileError(
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"can't move '%s': destination '%s' already exists" %
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(src, dst))
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if not isdir(dirname(dst)):
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raise DistutilsFileError(
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"can't move '%s': destination '%s' not a valid path" %
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(src, dst))
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copy_it = False
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try:
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os.rename(src, dst)
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except OSError as e:
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(num, msg) = e.args
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if num == errno.EXDEV:
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copy_it = True
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else:
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raise DistutilsFileError(
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"couldn't move '%s' to '%s': %s" % (src, dst, msg))
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if copy_it:
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copy_file(src, dst, verbose=verbose)
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try:
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os.unlink(src)
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except OSError as e:
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(num, msg) = e.args
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try:
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os.unlink(dst)
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except OSError:
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pass
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raise DistutilsFileError(
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"couldn't move '%s' to '%s' by copy/delete: "
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"delete '%s' failed: %s"
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% (src, dst, src, msg))
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return dst
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def write_file (filename, contents):
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"""Create a file with the specified name and write 'contents' (a
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sequence of strings without line terminators) to it.
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"""
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f = open(filename, "w")
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try:
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for line in contents:
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f.write(line + "\n")
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finally:
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f.close()
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