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Old engine for Continuous Time Bayesian Networks. Superseded by reCTBN. 🐍 https://github.com/madlabunimib/PyCTBN
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PyCTBN/venv/lib/python3.9/site-packages/scipy/_lib/_testutils.py

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3.9 KiB

"""
Generic test utilities.
"""
import os
import re
import sys
__all__ = ['PytestTester', 'check_free_memory']
class FPUModeChangeWarning(RuntimeWarning):
"""Warning about FPU mode change"""
pass
class PytestTester(object):
"""
Pytest test runner entry point.
"""
def __init__(self, module_name):
self.module_name = module_name
def __call__(self, label="fast", verbose=1, extra_argv=None, doctests=False,
coverage=False, tests=None, parallel=None):
import pytest
module = sys.modules[self.module_name]
module_path = os.path.abspath(module.__path__[0])
pytest_args = ['--showlocals', '--tb=short']
if doctests:
raise ValueError("Doctests not supported")
if extra_argv:
pytest_args += list(extra_argv)
if verbose and int(verbose) > 1:
pytest_args += ["-" + "v"*(int(verbose)-1)]
if coverage:
pytest_args += ["--cov=" + module_path]
if label == "fast":
pytest_args += ["-m", "not slow"]
elif label != "full":
pytest_args += ["-m", label]
if tests is None:
tests = [self.module_name]
if parallel is not None and parallel > 1:
if _pytest_has_xdist():
pytest_args += ['-n', str(parallel)]
else:
import warnings
warnings.warn('Could not run tests in parallel because '
'pytest-xdist plugin is not available.')
pytest_args += ['--pyargs'] + list(tests)
try:
code = pytest.main(pytest_args)
except SystemExit as exc:
code = exc.code
return (code == 0)
def _pytest_has_xdist():
"""
Check if the pytest-xdist plugin is installed, providing parallel tests
"""
# Check xdist exists without importing, otherwise pytests emits warnings
from importlib.util import find_spec
return find_spec('xdist') is not None
def check_free_memory(free_mb):
"""
Check *free_mb* of memory is available, otherwise do pytest.skip
"""
import pytest
try:
mem_free = _parse_size(os.environ['SCIPY_AVAILABLE_MEM'])
msg = '{0} MB memory required, but environment SCIPY_AVAILABLE_MEM={1}'.format(
free_mb, os.environ['SCIPY_AVAILABLE_MEM'])
except KeyError:
mem_free = _get_mem_available()
if mem_free is None:
pytest.skip("Could not determine available memory; set SCIPY_AVAILABLE_MEM "
"variable to free memory in MB to run the test.")
msg = '{0} MB memory required, but {1} MB available'.format(
free_mb, mem_free/1e6)
if mem_free < free_mb * 1e6:
pytest.skip(msg)
def _parse_size(size_str):
suffixes = {'': 1e6,
'b': 1.0,
'k': 1e3, 'M': 1e6, 'G': 1e9, 'T': 1e12,
'kb': 1e3, 'Mb': 1e6, 'Gb': 1e9, 'Tb': 1e12,
'kib': 1024.0, 'Mib': 1024.0**2, 'Gib': 1024.0**3, 'Tib': 1024.0**4}
m = re.match(r'^\s*(\d+)\s*({0})\s*$'.format('|'.join(suffixes.keys())),
size_str,
re.I)
if not m or m.group(2) not in suffixes:
raise ValueError("Invalid size string")
return float(m.group(1)) * suffixes[m.group(2)]
def _get_mem_available():
"""
Get information about memory available, not counting swap.
"""
try:
import psutil
return psutil.virtual_memory().available
except (ImportError, AttributeError):
pass
if sys.platform.startswith('linux'):
info = {}
with open('/proc/meminfo', 'r') as f:
for line in f:
p = line.split()
info[p[0].strip(':').lower()] = float(p[1]) * 1e3
if 'memavailable' in info:
# Linux >= 3.14
return info['memavailable']
else:
return info['memfree'] + info['cached']
return None