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Old engine for Continuous Time Bayesian Networks. Superseded by reCTBN. 🐍 https://github.com/madlabunimib/PyCTBN
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PyCTBN/venv/lib/python3.9/site-packages/pandas/tests/test_algos.py

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Refactor on docs; Add performance comparison
4 years ago
from datetime import datetime
from itertools import permutations
import struct
import numpy as np
from numpy.random import RandomState
import pytest
from pandas._libs import algos as libalgos, groupby as libgroupby, hashtable as ht
from pandas.compat.numpy import np_array_datetime64_compat
import pandas.util._test_decorators as td
from pandas.core.dtypes.common import (
is_bool_dtype,
is_complex_dtype,
is_float_dtype,
is_integer_dtype,
is_object_dtype,
)
from pandas.core.dtypes.dtypes import CategoricalDtype as CDT
import pandas as pd
from pandas import (
Categorical,
CategoricalIndex,
DatetimeIndex,
Index,
IntervalIndex,
Series,
Timestamp,
compat,
)
import pandas._testing as tm
import pandas.core.algorithms as algos
from pandas.core.arrays import DatetimeArray
import pandas.core.common as com
class TestFactorize:
def test_basic(self):
codes, uniques = algos.factorize(["a", "b", "b", "a", "a", "c", "c", "c"])
tm.assert_numpy_array_equal(uniques, np.array(["a", "b", "c"], dtype=object))
codes, uniques = algos.factorize(
["a", "b", "b", "a", "a", "c", "c", "c"], sort=True
)
exp = np.array([0, 1, 1, 0, 0, 2, 2, 2], dtype=np.intp)
tm.assert_numpy_array_equal(codes, exp)
exp = np.array(["a", "b", "c"], dtype=object)
tm.assert_numpy_array_equal(uniques, exp)
codes, uniques = algos.factorize(list(reversed(range(5))))
exp = np.array([0, 1, 2, 3, 4], dtype=np.intp)
tm.assert_numpy_array_equal(codes, exp)
exp = np.array([4, 3, 2, 1, 0], dtype=np.int64)
tm.assert_numpy_array_equal(uniques, exp)
codes, uniques = algos.factorize(list(reversed(range(5))), sort=True)
exp = np.array([4, 3, 2, 1, 0], dtype=np.intp)
tm.assert_numpy_array_equal(codes, exp)
exp = np.array([0, 1, 2, 3, 4], dtype=np.int64)
tm.assert_numpy_array_equal(uniques, exp)
codes, uniques = algos.factorize(list(reversed(np.arange(5.0))))
exp = np.array([0, 1, 2, 3, 4], dtype=np.intp)
tm.assert_numpy_array_equal(codes, exp)
exp = np.array([4.0, 3.0, 2.0, 1.0, 0.0], dtype=np.float64)
tm.assert_numpy_array_equal(uniques, exp)
codes, uniques = algos.factorize(list(reversed(np.arange(5.0))), sort=True)
exp = np.array([4, 3, 2, 1, 0], dtype=np.intp)
tm.assert_numpy_array_equal(codes, exp)
exp = np.array([0.0, 1.0, 2.0, 3.0, 4.0], dtype=np.float64)
tm.assert_numpy_array_equal(uniques, exp)
def test_mixed(self):
# doc example reshaping.rst
x = Series(["A", "A", np.nan, "B", 3.14, np.inf])
codes, uniques = algos.factorize(x)
exp = np.array([0, 0, -1, 1, 2, 3], dtype=np.intp)
tm.assert_numpy_array_equal(codes, exp)
exp = Index(["A", "B", 3.14, np.inf])
tm.assert_index_equal(uniques, exp)
codes, uniques = algos.factorize(x, sort=True)
exp = np.array([2, 2, -1, 3, 0, 1], dtype=np.intp)
tm.assert_numpy_array_equal(codes, exp)
exp = Index([3.14, np.inf, "A", "B"])
tm.assert_index_equal(uniques, exp)
def test_datelike(self):
# M8
v1 = Timestamp("20130101 09:00:00.00004")
v2 = Timestamp("20130101")
x = Series([v1, v1, v1, v2, v2, v1])
codes, uniques = algos.factorize(x)
exp = np.array([0, 0, 0, 1, 1, 0], dtype=np.intp)
tm.assert_numpy_array_equal(codes, exp)
exp = DatetimeIndex([v1, v2])
tm.assert_index_equal(uniques, exp)
codes, uniques = algos.factorize(x, sort=True)
exp = np.array([1, 1, 1, 0, 0, 1], dtype=np.intp)
tm.assert_numpy_array_equal(codes, exp)
exp = DatetimeIndex([v2, v1])
tm.assert_index_equal(uniques, exp)
# period
v1 = pd.Period("201302", freq="M")
v2 = pd.Period("201303", freq="M")
x = Series([v1, v1, v1, v2, v2, v1])
# periods are not 'sorted' as they are converted back into an index
codes, uniques = algos.factorize(x)
exp = np.array([0, 0, 0, 1, 1, 0], dtype=np.intp)
tm.assert_numpy_array_equal(codes, exp)
tm.assert_index_equal(uniques, pd.PeriodIndex([v1, v2]))
codes, uniques = algos.factorize(x, sort=True)
exp = np.array([0, 0, 0, 1, 1, 0], dtype=np.intp)
tm.assert_numpy_array_equal(codes, exp)
tm.assert_index_equal(uniques, pd.PeriodIndex([v1, v2]))
# GH 5986
v1 = pd.to_timedelta("1 day 1 min")
v2 = pd.to_timedelta("1 day")
x = Series([v1, v2, v1, v1, v2, v2, v1])
codes, uniques = algos.factorize(x)
exp = np.array([0, 1, 0, 0, 1, 1, 0], dtype=np.intp)
tm.assert_numpy_array_equal(codes, exp)
tm.assert_index_equal(uniques, pd.to_timedelta([v1, v2]))
codes, uniques = algos.factorize(x, sort=True)
exp = np.array([1, 0, 1, 1, 0, 0, 1], dtype=np.intp)
tm.assert_numpy_array_equal(codes, exp)
tm.assert_index_equal(uniques, pd.to_timedelta([v2, v1]))
def test_factorize_nan(self):
# nan should map to na_sentinel, not reverse_indexer[na_sentinel]
# rizer.factorize should not raise an exception if na_sentinel indexes
# outside of reverse_indexer
key = np.array([1, 2, 1, np.nan], dtype="O")
rizer = ht.Factorizer(len(key))
for na_sentinel in (-1, 20):
ids = rizer.factorize(key, sort=True, na_sentinel=na_sentinel)
expected = np.array([0, 1, 0, na_sentinel], dtype="int32")
assert len(set(key)) == len(set(expected))
tm.assert_numpy_array_equal(pd.isna(key), expected == na_sentinel)
# nan still maps to na_sentinel when sort=False
key = np.array([0, np.nan, 1], dtype="O")
na_sentinel = -1
# TODO(wesm): unused?
ids = rizer.factorize(key, sort=False, na_sentinel=na_sentinel) # noqa
expected = np.array([2, -1, 0], dtype="int32")
assert len(set(key)) == len(set(expected))
tm.assert_numpy_array_equal(pd.isna(key), expected == na_sentinel)
@pytest.mark.parametrize(
"data, expected_codes, expected_uniques",
[
(
[(1, 1), (1, 2), (0, 0), (1, 2), "nonsense"],
[0, 1, 2, 1, 3],
[(1, 1), (1, 2), (0, 0), "nonsense"],
),
(
[(1, 1), (1, 2), (0, 0), (1, 2), (1, 2, 3)],
[0, 1, 2, 1, 3],
[(1, 1), (1, 2), (0, 0), (1, 2, 3)],
),
([(1, 1), (1, 2), (0, 0), (1, 2)], [0, 1, 2, 1], [(1, 1), (1, 2), (0, 0)]),
],
)
def test_factorize_tuple_list(self, data, expected_codes, expected_uniques):
# GH9454
codes, uniques = pd.factorize(data)
tm.assert_numpy_array_equal(codes, np.array(expected_codes, dtype=np.intp))
expected_uniques_array = com.asarray_tuplesafe(expected_uniques, dtype=object)
tm.assert_numpy_array_equal(uniques, expected_uniques_array)
def test_complex_sorting(self):
# gh 12666 - check no segfault
x17 = np.array([complex(i) for i in range(17)], dtype=object)
msg = (
"unorderable types: .* [<>] .*"
"|" # the above case happens for numpy < 1.14
"'[<>]' not supported between instances of .*"
)
with pytest.raises(TypeError, match=msg):
algos.factorize(x17[::-1], sort=True)
def test_float64_factorize(self, writable):
data = np.array([1.0, 1e8, 1.0, 1e-8, 1e8, 1.0], dtype=np.float64)
data.setflags(write=writable)
expected_codes = np.array([0, 1, 0, 2, 1, 0], dtype=np.intp)
expected_uniques = np.array([1.0, 1e8, 1e-8], dtype=np.float64)
codes, uniques = algos.factorize(data)
tm.assert_numpy_array_equal(codes, expected_codes)
tm.assert_numpy_array_equal(uniques, expected_uniques)
def test_uint64_factorize(self, writable):
data = np.array([2 ** 64 - 1, 1, 2 ** 64 - 1], dtype=np.uint64)
data.setflags(write=writable)
expected_codes = np.array([0, 1, 0], dtype=np.intp)
expected_uniques = np.array([2 ** 64 - 1, 1], dtype=np.uint64)
codes, uniques = algos.factorize(data)
tm.assert_numpy_array_equal(codes, expected_codes)
tm.assert_numpy_array_equal(uniques, expected_uniques)
def test_int64_factorize(self, writable):
data = np.array([2 ** 63 - 1, -(2 ** 63), 2 ** 63 - 1], dtype=np.int64)
data.setflags(write=writable)
expected_codes = np.array([0, 1, 0], dtype=np.intp)
expected_uniques = np.array([2 ** 63 - 1, -(2 ** 63)], dtype=np.int64)
codes, uniques = algos.factorize(data)
tm.assert_numpy_array_equal(codes, expected_codes)
tm.assert_numpy_array_equal(uniques, expected_uniques)
def test_string_factorize(self, writable):
data = np.array(["a", "c", "a", "b", "c"], dtype=object)
data.setflags(write=writable)
expected_codes = np.array([0, 1, 0, 2, 1], dtype=np.intp)
expected_uniques = np.array(["a", "c", "b"], dtype=object)
codes, uniques = algos.factorize(data)
tm.assert_numpy_array_equal(codes, expected_codes)
tm.assert_numpy_array_equal(uniques, expected_uniques)
def test_object_factorize(self, writable):
data = np.array(["a", "c", None, np.nan, "a", "b", pd.NaT, "c"], dtype=object)
data.setflags(write=writable)
expected_codes = np.array([0, 1, -1, -1, 0, 2, -1, 1], dtype=np.intp)
expected_uniques = np.array(["a", "c", "b"], dtype=object)
codes, uniques = algos.factorize(data)
tm.assert_numpy_array_equal(codes, expected_codes)
tm.assert_numpy_array_equal(uniques, expected_uniques)
def test_deprecate_order(self):
# gh 19727 - check warning is raised for deprecated keyword, order.
# Test not valid once order keyword is removed.
data = np.array([2 ** 63, 1, 2 ** 63], dtype=np.uint64)
with pytest.raises(TypeError, match="got an unexpected keyword"):
algos.factorize(data, order=True)
with tm.assert_produces_warning(False):
algos.factorize(data)
@pytest.mark.parametrize(
"data",
[
np.array([0, 1, 0], dtype="u8"),
np.array([-(2 ** 63), 1, -(2 ** 63)], dtype="i8"),
np.array(["__nan__", "foo", "__nan__"], dtype="object"),
],
)
def test_parametrized_factorize_na_value_default(self, data):
# arrays that include the NA default for that type, but isn't used.
codes, uniques = algos.factorize(data)
expected_uniques = data[[0, 1]]
expected_codes = np.array([0, 1, 0], dtype=np.intp)
tm.assert_numpy_array_equal(codes, expected_codes)
tm.assert_numpy_array_equal(uniques, expected_uniques)
@pytest.mark.parametrize(
"data, na_value",
[
(np.array([0, 1, 0, 2], dtype="u8"), 0),
(np.array([1, 0, 1, 2], dtype="u8"), 1),
(np.array([-(2 ** 63), 1, -(2 ** 63), 0], dtype="i8"), -(2 ** 63)),
(np.array([1, -(2 ** 63), 1, 0], dtype="i8"), 1),
(np.array(["a", "", "a", "b"], dtype=object), "a"),
(np.array([(), ("a", 1), (), ("a", 2)], dtype=object), ()),
(np.array([("a", 1), (), ("a", 1), ("a", 2)], dtype=object), ("a", 1)),
],
)
def test_parametrized_factorize_na_value(self, data, na_value):
codes, uniques = algos._factorize_array(data, na_value=na_value)
expected_uniques = data[[1, 3]]
expected_codes = np.array([-1, 0, -1, 1], dtype=np.intp)
tm.assert_numpy_array_equal(codes, expected_codes)
tm.assert_numpy_array_equal(uniques, expected_uniques)
@pytest.mark.parametrize("sort", [True, False])
@pytest.mark.parametrize("na_sentinel", [-1, -10, 100])
@pytest.mark.parametrize(
"data, uniques",
[
(
np.array(["b", "a", None, "b"], dtype=object),
np.array(["b", "a"], dtype=object),
),
(
pd.array([2, 1, np.nan, 2], dtype="Int64"),
pd.array([2, 1], dtype="Int64"),
),
],
ids=["numpy_array", "extension_array"],
)
def test_factorize_na_sentinel(self, sort, na_sentinel, data, uniques):
codes, uniques = algos.factorize(data, sort=sort, na_sentinel=na_sentinel)
if sort:
expected_codes = np.array([1, 0, na_sentinel, 1], dtype=np.intp)
expected_uniques = algos.safe_sort(uniques)
else:
expected_codes = np.array([0, 1, na_sentinel, 0], dtype=np.intp)
expected_uniques = uniques
tm.assert_numpy_array_equal(codes, expected_codes)
if isinstance(data, np.ndarray):
tm.assert_numpy_array_equal(uniques, expected_uniques)
else:
tm.assert_extension_array_equal(uniques, expected_uniques)
@pytest.mark.parametrize(
"data, expected_codes, expected_uniques",
[
(
["a", None, "b", "a"],
np.array([0, 2, 1, 0], dtype=np.dtype("intp")),
np.array(["a", "b", np.nan], dtype=object),
),
(
["a", np.nan, "b", "a"],
np.array([0, 2, 1, 0], dtype=np.dtype("intp")),
np.array(["a", "b", np.nan], dtype=object),
),
],
)
def test_object_factorize_na_sentinel_none(
self, data, expected_codes, expected_uniques
):
codes, uniques = algos.factorize(data, na_sentinel=None)
tm.assert_numpy_array_equal(uniques, expected_uniques)
tm.assert_numpy_array_equal(codes, expected_codes)
@pytest.mark.parametrize(
"data, expected_codes, expected_uniques",
[
(
[1, None, 1, 2],
np.array([0, 2, 0, 1], dtype=np.dtype("intp")),
np.array([1, 2, np.nan], dtype="O"),
),
(
[1, np.nan, 1, 2],
np.array([0, 2, 0, 1], dtype=np.dtype("intp")),
np.array([1, 2, np.nan], dtype=np.float64),
),
],
)
def test_int_factorize_na_sentinel_none(
self, data, expected_codes, expected_uniques
):
codes, uniques = algos.factorize(data, na_sentinel=None)
tm.assert_numpy_array_equal(uniques, expected_uniques)
tm.assert_numpy_array_equal(codes, expected_codes)
class TestUnique:
def test_ints(self):
arr = np.random.randint(0, 100, size=50)
result = algos.unique(arr)
assert isinstance(result, np.ndarray)
def test_objects(self):
arr = np.random.randint(0, 100, size=50).astype("O")
result = algos.unique(arr)
assert isinstance(result, np.ndarray)
def test_object_refcount_bug(self):
lst = ["A", "B", "C", "D", "E"]
for i in range(1000):
len(algos.unique(lst))
def test_on_index_object(self):
mindex = pd.MultiIndex.from_arrays(
[np.arange(5).repeat(5), np.tile(np.arange(5), 5)]
)
expected = mindex.values
expected.sort()
mindex = mindex.repeat(2)
result = pd.unique(mindex)
result.sort()
tm.assert_almost_equal(result, expected)
def test_dtype_preservation(self, any_numpy_dtype):
# GH 15442
if any_numpy_dtype in (tm.BYTES_DTYPES + tm.STRING_DTYPES):
pytest.skip("skip string dtype")
elif is_integer_dtype(any_numpy_dtype):
data = [1, 2, 2]
uniques = [1, 2]
elif is_float_dtype(any_numpy_dtype):
data = [1, 2, 2]
uniques = [1.0, 2.0]
elif is_complex_dtype(any_numpy_dtype):
data = [complex(1, 0), complex(2, 0), complex(2, 0)]
uniques = [complex(1, 0), complex(2, 0)]
elif is_bool_dtype(any_numpy_dtype):
data = [True, True, False]
uniques = [True, False]
elif is_object_dtype(any_numpy_dtype):
data = ["A", "B", "B"]
uniques = ["A", "B"]
else:
# datetime64[ns]/M8[ns]/timedelta64[ns]/m8[ns] tested elsewhere
data = [1, 2, 2]
uniques = [1, 2]
result = Series(data, dtype=any_numpy_dtype).unique()
expected = np.array(uniques, dtype=any_numpy_dtype)
tm.assert_numpy_array_equal(result, expected)
def test_datetime64_dtype_array_returned(self):
# GH 9431
expected = np_array_datetime64_compat(
[
"2015-01-03T00:00:00.000000000+0000",
"2015-01-01T00:00:00.000000000+0000",
],
dtype="M8[ns]",
)
dt_index = pd.to_datetime(
[
"2015-01-03T00:00:00.000000000",
"2015-01-01T00:00:00.000000000",
"2015-01-01T00:00:00.000000000",
]
)
result = algos.unique(dt_index)
tm.assert_numpy_array_equal(result, expected)
assert result.dtype == expected.dtype
s = Series(dt_index)
result = algos.unique(s)
tm.assert_numpy_array_equal(result, expected)
assert result.dtype == expected.dtype
arr = s.values
result = algos.unique(arr)
tm.assert_numpy_array_equal(result, expected)
assert result.dtype == expected.dtype
def test_datetime_non_ns(self):
a = np.array(["2000", "2000", "2001"], dtype="datetime64[s]")
result = pd.unique(a)
expected = np.array(["2000", "2001"], dtype="datetime64[ns]")
tm.assert_numpy_array_equal(result, expected)
def test_timedelta_non_ns(self):
a = np.array(["2000", "2000", "2001"], dtype="timedelta64[s]")
result = pd.unique(a)
expected = np.array([2000000000000, 2001000000000], dtype="timedelta64[ns]")
tm.assert_numpy_array_equal(result, expected)
def test_timedelta64_dtype_array_returned(self):
# GH 9431
expected = np.array([31200, 45678, 10000], dtype="m8[ns]")
td_index = pd.to_timedelta([31200, 45678, 31200, 10000, 45678])
result = algos.unique(td_index)
tm.assert_numpy_array_equal(result, expected)
assert result.dtype == expected.dtype
s = Series(td_index)
result = algos.unique(s)
tm.assert_numpy_array_equal(result, expected)
assert result.dtype == expected.dtype
arr = s.values
result = algos.unique(arr)
tm.assert_numpy_array_equal(result, expected)
assert result.dtype == expected.dtype
def test_uint64_overflow(self):
s = Series([1, 2, 2 ** 63, 2 ** 63], dtype=np.uint64)
exp = np.array([1, 2, 2 ** 63], dtype=np.uint64)
tm.assert_numpy_array_equal(algos.unique(s), exp)
def test_nan_in_object_array(self):
duplicated_items = ["a", np.nan, "c", "c"]
result = pd.unique(duplicated_items)
expected = np.array(["a", np.nan, "c"], dtype=object)
tm.assert_numpy_array_equal(result, expected)
def test_categorical(self):
# we are expecting to return in the order
# of appearance
expected = Categorical(list("bac"), categories=list("bac"))
# we are expecting to return in the order
# of the categories
expected_o = Categorical(list("bac"), categories=list("abc"), ordered=True)
# GH 15939
c = Categorical(list("baabc"))
result = c.unique()
tm.assert_categorical_equal(result, expected)
result = algos.unique(c)
tm.assert_categorical_equal(result, expected)
c = Categorical(list("baabc"), ordered=True)
result = c.unique()
tm.assert_categorical_equal(result, expected_o)
result = algos.unique(c)
tm.assert_categorical_equal(result, expected_o)
# Series of categorical dtype
s = Series(Categorical(list("baabc")), name="foo")
result = s.unique()
tm.assert_categorical_equal(result, expected)
result = pd.unique(s)
tm.assert_categorical_equal(result, expected)
# CI -> return CI
ci = CategoricalIndex(Categorical(list("baabc"), categories=list("bac")))
expected = CategoricalIndex(expected)
result = ci.unique()
tm.assert_index_equal(result, expected)
result = pd.unique(ci)
tm.assert_index_equal(result, expected)
def test_datetime64tz_aware(self):
# GH 15939
result = Series(
Index(
[
Timestamp("20160101", tz="US/Eastern"),
Timestamp("20160101", tz="US/Eastern"),
]
)
).unique()
expected = DatetimeArray._from_sequence(
np.array([Timestamp("2016-01-01 00:00:00-0500", tz="US/Eastern")])
)
tm.assert_extension_array_equal(result, expected)
result = Index(
[
Timestamp("20160101", tz="US/Eastern"),
Timestamp("20160101", tz="US/Eastern"),
]
).unique()
expected = DatetimeIndex(
["2016-01-01 00:00:00"], dtype="datetime64[ns, US/Eastern]", freq=None
)
tm.assert_index_equal(result, expected)
result = pd.unique(
Series(
Index(
[
Timestamp("20160101", tz="US/Eastern"),
Timestamp("20160101", tz="US/Eastern"),
]
)
)
)
expected = DatetimeArray._from_sequence(
np.array([Timestamp("2016-01-01", tz="US/Eastern")])
)
tm.assert_extension_array_equal(result, expected)
result = pd.unique(
Index(
[
Timestamp("20160101", tz="US/Eastern"),
Timestamp("20160101", tz="US/Eastern"),
]
)
)
expected = DatetimeIndex(
["2016-01-01 00:00:00"], dtype="datetime64[ns, US/Eastern]", freq=None
)
tm.assert_index_equal(result, expected)
def test_order_of_appearance(self):
# 9346
# light testing of guarantee of order of appearance
# these also are the doc-examples
result = pd.unique(Series([2, 1, 3, 3]))
tm.assert_numpy_array_equal(result, np.array([2, 1, 3], dtype="int64"))
result = pd.unique(Series([2] + [1] * 5))
tm.assert_numpy_array_equal(result, np.array([2, 1], dtype="int64"))
result = pd.unique(Series([Timestamp("20160101"), Timestamp("20160101")]))
expected = np.array(["2016-01-01T00:00:00.000000000"], dtype="datetime64[ns]")
tm.assert_numpy_array_equal(result, expected)
result = pd.unique(
Index(
[
Timestamp("20160101", tz="US/Eastern"),
Timestamp("20160101", tz="US/Eastern"),
]
)
)
expected = DatetimeIndex(
["2016-01-01 00:00:00"], dtype="datetime64[ns, US/Eastern]", freq=None
)
tm.assert_index_equal(result, expected)
result = pd.unique(list("aabc"))
expected = np.array(["a", "b", "c"], dtype=object)
tm.assert_numpy_array_equal(result, expected)
result = pd.unique(Series(Categorical(list("aabc"))))
expected = Categorical(list("abc"))
tm.assert_categorical_equal(result, expected)
@pytest.mark.parametrize(
"arg ,expected",
[
(("1", "1", "2"), np.array(["1", "2"], dtype=object)),
(("foo",), np.array(["foo"], dtype=object)),
],
)
def test_tuple_with_strings(self, arg, expected):
# see GH 17108
result = pd.unique(arg)
tm.assert_numpy_array_equal(result, expected)
def test_obj_none_preservation(self):
# GH 20866
arr = np.array(["foo", None], dtype=object)
result = pd.unique(arr)
expected = np.array(["foo", None], dtype=object)
tm.assert_numpy_array_equal(result, expected, strict_nan=True)
def test_signed_zero(self):
# GH 21866
a = np.array([-0.0, 0.0])
result = pd.unique(a)
expected = np.array([-0.0]) # 0.0 and -0.0 are equivalent
tm.assert_numpy_array_equal(result, expected)
def test_different_nans(self):
# GH 21866
# create different nans from bit-patterns:
NAN1 = struct.unpack("d", struct.pack("=Q", 0x7FF8000000000000))[0]
NAN2 = struct.unpack("d", struct.pack("=Q", 0x7FF8000000000001))[0]
assert NAN1 != NAN1
assert NAN2 != NAN2
a = np.array([NAN1, NAN2]) # NAN1 and NAN2 are equivalent
result = pd.unique(a)
expected = np.array([np.nan])
tm.assert_numpy_array_equal(result, expected)
def test_first_nan_kept(self):
# GH 22295
# create different nans from bit-patterns:
bits_for_nan1 = 0xFFF8000000000001
bits_for_nan2 = 0x7FF8000000000001
NAN1 = struct.unpack("d", struct.pack("=Q", bits_for_nan1))[0]
NAN2 = struct.unpack("d", struct.pack("=Q", bits_for_nan2))[0]
assert NAN1 != NAN1
assert NAN2 != NAN2
for el_type in [np.float64, object]:
a = np.array([NAN1, NAN2], dtype=el_type)
result = pd.unique(a)
assert result.size == 1
# use bit patterns to identify which nan was kept:
result_nan_bits = struct.unpack("=Q", struct.pack("d", result[0]))[0]
assert result_nan_bits == bits_for_nan1
def test_do_not_mangle_na_values(self, unique_nulls_fixture, unique_nulls_fixture2):
# GH 22295
if unique_nulls_fixture is unique_nulls_fixture2:
return # skip it, values not unique
a = np.array([unique_nulls_fixture, unique_nulls_fixture2], dtype=object)
result = pd.unique(a)
assert result.size == 2
assert a[0] is unique_nulls_fixture
assert a[1] is unique_nulls_fixture2
class TestIsin:
def test_invalid(self):
msg = (
r"only list-like objects are allowed to be passed to isin\(\), "
r"you passed a \[int\]"
)
with pytest.raises(TypeError, match=msg):
algos.isin(1, 1)
with pytest.raises(TypeError, match=msg):
algos.isin(1, [1])
with pytest.raises(TypeError, match=msg):
algos.isin([1], 1)
def test_basic(self):
result = algos.isin([1, 2], [1])
expected = np.array([True, False])
tm.assert_numpy_array_equal(result, expected)
result = algos.isin(np.array([1, 2]), [1])
expected = np.array([True, False])
tm.assert_numpy_array_equal(result, expected)
result = algos.isin(Series([1, 2]), [1])
expected = np.array([True, False])
tm.assert_numpy_array_equal(result, expected)
result = algos.isin(Series([1, 2]), Series([1]))
expected = np.array([True, False])
tm.assert_numpy_array_equal(result, expected)
result = algos.isin(Series([1, 2]), {1})
expected = np.array([True, False])
tm.assert_numpy_array_equal(result, expected)
result = algos.isin(["a", "b"], ["a"])
expected = np.array([True, False])
tm.assert_numpy_array_equal(result, expected)
result = algos.isin(Series(["a", "b"]), Series(["a"]))
expected = np.array([True, False])
tm.assert_numpy_array_equal(result, expected)
result = algos.isin(Series(["a", "b"]), {"a"})
expected = np.array([True, False])
tm.assert_numpy_array_equal(result, expected)
result = algos.isin(["a", "b"], [1])
expected = np.array([False, False])
tm.assert_numpy_array_equal(result, expected)
def test_i8(self):
arr = pd.date_range("20130101", periods=3).values
result = algos.isin(arr, [arr[0]])
expected = np.array([True, False, False])
tm.assert_numpy_array_equal(result, expected)
result = algos.isin(arr, arr[0:2])
expected = np.array([True, True, False])
tm.assert_numpy_array_equal(result, expected)
result = algos.isin(arr, set(arr[0:2]))
expected = np.array([True, True, False])
tm.assert_numpy_array_equal(result, expected)
arr = pd.timedelta_range("1 day", periods=3).values
result = algos.isin(arr, [arr[0]])
expected = np.array([True, False, False])
tm.assert_numpy_array_equal(result, expected)
result = algos.isin(arr, arr[0:2])
expected = np.array([True, True, False])
tm.assert_numpy_array_equal(result, expected)
result = algos.isin(arr, set(arr[0:2]))
expected = np.array([True, True, False])
tm.assert_numpy_array_equal(result, expected)
def test_large(self):
s = pd.date_range("20000101", periods=2000000, freq="s").values
result = algos.isin(s, s[0:2])
expected = np.zeros(len(s), dtype=bool)
expected[0] = True
expected[1] = True
tm.assert_numpy_array_equal(result, expected)
def test_categorical_from_codes(self):
# GH 16639
vals = np.array([0, 1, 2, 0])
cats = ["a", "b", "c"]
Sd = Series(Categorical(1).from_codes(vals, cats))
St = Series(Categorical(1).from_codes(np.array([0, 1]), cats))
expected = np.array([True, True, False, True])
result = algos.isin(Sd, St)
tm.assert_numpy_array_equal(expected, result)
def test_categorical_isin(self):
vals = np.array([0, 1, 2, 0])
cats = ["a", "b", "c"]
cat = Categorical(1).from_codes(vals, cats)
other = Categorical(1).from_codes(np.array([0, 1]), cats)
expected = np.array([True, True, False, True])
result = algos.isin(cat, other)
tm.assert_numpy_array_equal(expected, result)
def test_same_nan_is_in(self):
# GH 22160
# nan is special, because from " a is b" doesn't follow "a == b"
# at least, isin() should follow python's "np.nan in [nan] == True"
# casting to -> np.float64 -> another float-object somewhere on
# the way could lead jepardize this behavior
comps = [np.nan] # could be casted to float64
values = [np.nan]
expected = np.array([True])
result = algos.isin(comps, values)
tm.assert_numpy_array_equal(expected, result)
def test_same_nan_is_in_large(self):
# https://github.com/pandas-dev/pandas/issues/22205
s = np.tile(1.0, 1_000_001)
s[0] = np.nan
result = algos.isin(s, [np.nan, 1])
expected = np.ones(len(s), dtype=bool)
tm.assert_numpy_array_equal(result, expected)
def test_same_nan_is_in_large_series(self):
# https://github.com/pandas-dev/pandas/issues/22205
s = np.tile(1.0, 1_000_001)
series = pd.Series(s)
s[0] = np.nan
result = series.isin([np.nan, 1])
expected = pd.Series(np.ones(len(s), dtype=bool))
tm.assert_series_equal(result, expected)
def test_same_object_is_in(self):
# GH 22160
# there could be special treatment for nans
# the user however could define a custom class
# with similar behavior, then we at least should
# fall back to usual python's behavior: "a in [a] == True"
class LikeNan:
def __eq__(self, other) -> bool:
return False
def __hash__(self):
return 0
a, b = LikeNan(), LikeNan()
# same object -> True
tm.assert_numpy_array_equal(algos.isin([a], [a]), np.array([True]))
# different objects -> False
tm.assert_numpy_array_equal(algos.isin([a], [b]), np.array([False]))
def test_different_nans(self):
# GH 22160
# all nans are handled as equivalent
comps = [float("nan")]
values = [float("nan")]
assert comps[0] is not values[0] # different nan-objects
# as list of python-objects:
result = algos.isin(comps, values)
tm.assert_numpy_array_equal(np.array([True]), result)
# as object-array:
result = algos.isin(
np.asarray(comps, dtype=object), np.asarray(values, dtype=object)
)
tm.assert_numpy_array_equal(np.array([True]), result)
# as float64-array:
result = algos.isin(
np.asarray(comps, dtype=np.float64), np.asarray(values, dtype=np.float64)
)
tm.assert_numpy_array_equal(np.array([True]), result)
def test_no_cast(self):
# GH 22160
# ensure 42 is not casted to a string
comps = ["ss", 42]
values = ["42"]
expected = np.array([False, False])
result = algos.isin(comps, values)
tm.assert_numpy_array_equal(expected, result)
@pytest.mark.parametrize("empty", [[], Series(dtype=object), np.array([])])
def test_empty(self, empty):
# see gh-16991
vals = Index(["a", "b"])
expected = np.array([False, False])
result = algos.isin(vals, empty)
tm.assert_numpy_array_equal(expected, result)
def test_different_nan_objects(self):
# GH 22119
comps = np.array(["nan", np.nan * 1j, float("nan")], dtype=object)
vals = np.array([float("nan")], dtype=object)
expected = np.array([False, False, True])
result = algos.isin(comps, vals)
tm.assert_numpy_array_equal(expected, result)
def test_different_nans_as_float64(self):
# GH 21866
# create different nans from bit-patterns,
# these nans will land in different buckets in the hash-table
# if no special care is taken
NAN1 = struct.unpack("d", struct.pack("=Q", 0x7FF8000000000000))[0]
NAN2 = struct.unpack("d", struct.pack("=Q", 0x7FF8000000000001))[0]
assert NAN1 != NAN1
assert NAN2 != NAN2
# check that NAN1 and NAN2 are equivalent:
arr = np.array([NAN1, NAN2], dtype=np.float64)
lookup1 = np.array([NAN1], dtype=np.float64)
result = algos.isin(arr, lookup1)
expected = np.array([True, True])
tm.assert_numpy_array_equal(result, expected)
lookup2 = np.array([NAN2], dtype=np.float64)
result = algos.isin(arr, lookup2)
expected = np.array([True, True])
tm.assert_numpy_array_equal(result, expected)
@pytest.mark.xfail(reason="problem related with issue #34125")
def test_isin_int_df_string_search(self):
"""Comparing df with int`s (1,2) with a string at isin() ("1")
-> should not match values because int 1 is not equal str 1"""
df = pd.DataFrame({"values": [1, 2]})
result = df.isin(["1"])
expected_false = pd.DataFrame({"values": [False, False]})
tm.assert_frame_equal(result, expected_false)
@pytest.mark.xfail(reason="problem related with issue #34125")
def test_isin_nan_df_string_search(self):
"""Comparing df with nan value (np.nan,2) with a string at isin() ("NaN")
-> should not match values because np.nan is not equal str NaN """
df = pd.DataFrame({"values": [np.nan, 2]})
result = df.isin(["NaN"])
expected_false = pd.DataFrame({"values": [False, False]})
tm.assert_frame_equal(result, expected_false)
@pytest.mark.xfail(reason="problem related with issue #34125")
def test_isin_float_df_string_search(self):
"""Comparing df with floats (1.4245,2.32441) with a string at isin() ("1.4245")
-> should not match values because float 1.4245 is not equal str 1.4245"""
df = pd.DataFrame({"values": [1.4245, 2.32441]})
result = df.isin(["1.4245"])
expected_false = pd.DataFrame({"values": [False, False]})
tm.assert_frame_equal(result, expected_false)
class TestValueCounts:
def test_value_counts(self):
np.random.seed(1234)
from pandas.core.reshape.tile import cut
arr = np.random.randn(4)
factor = cut(arr, 4)
# assert isinstance(factor, n)
result = algos.value_counts(factor)
breaks = [-1.194, -0.535, 0.121, 0.777, 1.433]
index = IntervalIndex.from_breaks(breaks).astype(CDT(ordered=True))
expected = Series([1, 1, 1, 1], index=index)
tm.assert_series_equal(result.sort_index(), expected.sort_index())
def test_value_counts_bins(self):
s = [1, 2, 3, 4]
result = algos.value_counts(s, bins=1)
expected = Series([4], index=IntervalIndex.from_tuples([(0.996, 4.0)]))
tm.assert_series_equal(result, expected)
result = algos.value_counts(s, bins=2, sort=False)
expected = Series(
[2, 2], index=IntervalIndex.from_tuples([(0.996, 2.5), (2.5, 4.0)])
)
tm.assert_series_equal(result, expected)
def test_value_counts_dtypes(self):
result = algos.value_counts([1, 1.0])
assert len(result) == 1
result = algos.value_counts([1, 1.0], bins=1)
assert len(result) == 1
result = algos.value_counts(Series([1, 1.0, "1"])) # object
assert len(result) == 2
msg = "bins argument only works with numeric data"
with pytest.raises(TypeError, match=msg):
algos.value_counts(["1", 1], bins=1)
def test_value_counts_nat(self):
td = Series([np.timedelta64(10000), pd.NaT], dtype="timedelta64[ns]")
dt = pd.to_datetime(["NaT", "2014-01-01"])
for s in [td, dt]:
vc = algos.value_counts(s)
vc_with_na = algos.value_counts(s, dropna=False)
assert len(vc) == 1
assert len(vc_with_na) == 2
exp_dt = Series({Timestamp("2014-01-01 00:00:00"): 1})
tm.assert_series_equal(algos.value_counts(dt), exp_dt)
# TODO same for (timedelta)
def test_value_counts_datetime_outofbounds(self):
# GH 13663
s = Series(
[
datetime(3000, 1, 1),
datetime(5000, 1, 1),
datetime(5000, 1, 1),
datetime(6000, 1, 1),
datetime(3000, 1, 1),
datetime(3000, 1, 1),
]
)
res = s.value_counts()
exp_index = Index(
[datetime(3000, 1, 1), datetime(5000, 1, 1), datetime(6000, 1, 1)],
dtype=object,
)
exp = Series([3, 2, 1], index=exp_index)
tm.assert_series_equal(res, exp)
# GH 12424
res = pd.to_datetime(Series(["2362-01-01", np.nan]), errors="ignore")
exp = Series(["2362-01-01", np.nan], dtype=object)
tm.assert_series_equal(res, exp)
def test_categorical(self):
s = Series(Categorical(list("aaabbc")))
result = s.value_counts()
expected = Series([3, 2, 1], index=CategoricalIndex(["a", "b", "c"]))
tm.assert_series_equal(result, expected, check_index_type=True)
# preserve order?
s = s.cat.as_ordered()
result = s.value_counts()
expected.index = expected.index.as_ordered()
tm.assert_series_equal(result, expected, check_index_type=True)
def test_categorical_nans(self):
s = Series(Categorical(list("aaaaabbbcc"))) # 4,3,2,1 (nan)
s.iloc[1] = np.nan
result = s.value_counts()
expected = Series(
[4, 3, 2],
index=CategoricalIndex(["a", "b", "c"], categories=["a", "b", "c"]),
)
tm.assert_series_equal(result, expected, check_index_type=True)
result = s.value_counts(dropna=False)
expected = Series([4, 3, 2, 1], index=CategoricalIndex(["a", "b", "c", np.nan]))
tm.assert_series_equal(result, expected, check_index_type=True)
# out of order
s = Series(
Categorical(list("aaaaabbbcc"), ordered=True, categories=["b", "a", "c"])
)
s.iloc[1] = np.nan
result = s.value_counts()
expected = Series(
[4, 3, 2],
index=CategoricalIndex(
["a", "b", "c"], categories=["b", "a", "c"], ordered=True
),
)
tm.assert_series_equal(result, expected, check_index_type=True)
result = s.value_counts(dropna=False)
expected = Series(
[4, 3, 2, 1],
index=CategoricalIndex(
["a", "b", "c", np.nan], categories=["b", "a", "c"], ordered=True
),
)
tm.assert_series_equal(result, expected, check_index_type=True)
def test_categorical_zeroes(self):
# keep the `d` category with 0
s = Series(Categorical(list("bbbaac"), categories=list("abcd"), ordered=True))
result = s.value_counts()
expected = Series(
[3, 2, 1, 0],
index=Categorical(
["b", "a", "c", "d"], categories=list("abcd"), ordered=True
),
)
tm.assert_series_equal(result, expected, check_index_type=True)
def test_dropna(self):
# https://github.com/pandas-dev/pandas/issues/9443#issuecomment-73719328
tm.assert_series_equal(
Series([True, True, False]).value_counts(dropna=True),
Series([2, 1], index=[True, False]),
)
tm.assert_series_equal(
Series([True, True, False]).value_counts(dropna=False),
Series([2, 1], index=[True, False]),
)
tm.assert_series_equal(
Series([True, True, False, None]).value_counts(dropna=True),
Series([2, 1], index=[True, False]),
)
tm.assert_series_equal(
Series([True, True, False, None]).value_counts(dropna=False),
Series([2, 1, 1], index=[True, False, np.nan]),
)
tm.assert_series_equal(
Series([10.3, 5.0, 5.0]).value_counts(dropna=True),
Series([2, 1], index=[5.0, 10.3]),
)
tm.assert_series_equal(
Series([10.3, 5.0, 5.0]).value_counts(dropna=False),
Series([2, 1], index=[5.0, 10.3]),
)
tm.assert_series_equal(
Series([10.3, 5.0, 5.0, None]).value_counts(dropna=True),
Series([2, 1], index=[5.0, 10.3]),
)
# 32-bit linux has a different ordering
if not compat.is_platform_32bit():
result = Series([10.3, 5.0, 5.0, None]).value_counts(dropna=False)
expected = Series([2, 1, 1], index=[5.0, 10.3, np.nan])
tm.assert_series_equal(result, expected)
def test_value_counts_normalized(self):
# GH12558
s = Series([1, 2, np.nan, np.nan, np.nan])
dtypes = (np.float64, object, "M8[ns]")
for t in dtypes:
s_typed = s.astype(t)
result = s_typed.value_counts(normalize=True, dropna=False)
expected = Series(
[0.6, 0.2, 0.2], index=Series([np.nan, 2.0, 1.0], dtype=t)
)
tm.assert_series_equal(result, expected)
result = s_typed.value_counts(normalize=True, dropna=True)
expected = Series([0.5, 0.5], index=Series([2.0, 1.0], dtype=t))
tm.assert_series_equal(result, expected)
def test_value_counts_uint64(self):
arr = np.array([2 ** 63], dtype=np.uint64)
expected = Series([1], index=[2 ** 63])
result = algos.value_counts(arr)
tm.assert_series_equal(result, expected)
arr = np.array([-1, 2 ** 63], dtype=object)
expected = Series([1, 1], index=[-1, 2 ** 63])
result = algos.value_counts(arr)
# 32-bit linux has a different ordering
if not compat.is_platform_32bit():
tm.assert_series_equal(result, expected)
class TestDuplicated:
def test_duplicated_with_nas(self):
keys = np.array([0, 1, np.nan, 0, 2, np.nan], dtype=object)
result = algos.duplicated(keys)
expected = np.array([False, False, False, True, False, True])
tm.assert_numpy_array_equal(result, expected)
result = algos.duplicated(keys, keep="first")
expected = np.array([False, False, False, True, False, True])
tm.assert_numpy_array_equal(result, expected)
result = algos.duplicated(keys, keep="last")
expected = np.array([True, False, True, False, False, False])
tm.assert_numpy_array_equal(result, expected)
result = algos.duplicated(keys, keep=False)
expected = np.array([True, False, True, True, False, True])
tm.assert_numpy_array_equal(result, expected)
keys = np.empty(8, dtype=object)
for i, t in enumerate(
zip([0, 0, np.nan, np.nan] * 2, [0, np.nan, 0, np.nan] * 2)
):
keys[i] = t
result = algos.duplicated(keys)
falses = [False] * 4
trues = [True] * 4
expected = np.array(falses + trues)
tm.assert_numpy_array_equal(result, expected)
result = algos.duplicated(keys, keep="last")
expected = np.array(trues + falses)
tm.assert_numpy_array_equal(result, expected)
result = algos.duplicated(keys, keep=False)
expected = np.array(trues + trues)
tm.assert_numpy_array_equal(result, expected)
@pytest.mark.parametrize(
"case",
[
np.array([1, 2, 1, 5, 3, 2, 4, 1, 5, 6]),
np.array([1.1, 2.2, 1.1, np.nan, 3.3, 2.2, 4.4, 1.1, np.nan, 6.6]),
np.array(
[
1 + 1j,
2 + 2j,
1 + 1j,
5 + 5j,
3 + 3j,
2 + 2j,
4 + 4j,
1 + 1j,
5 + 5j,
6 + 6j,
]
),
np.array(["a", "b", "a", "e", "c", "b", "d", "a", "e", "f"], dtype=object),
np.array(
[1, 2 ** 63, 1, 3 ** 5, 10, 2 ** 63, 39, 1, 3 ** 5, 7], dtype=np.uint64
),
],
)
def test_numeric_object_likes(self, case):
exp_first = np.array(
[False, False, True, False, False, True, False, True, True, False]
)
exp_last = np.array(
[True, True, True, True, False, False, False, False, False, False]
)
exp_false = exp_first | exp_last
res_first = algos.duplicated(case, keep="first")
tm.assert_numpy_array_equal(res_first, exp_first)
res_last = algos.duplicated(case, keep="last")
tm.assert_numpy_array_equal(res_last, exp_last)
res_false = algos.duplicated(case, keep=False)
tm.assert_numpy_array_equal(res_false, exp_false)
# index
for idx in [Index(case), Index(case, dtype="category")]:
res_first = idx.duplicated(keep="first")
tm.assert_numpy_array_equal(res_first, exp_first)
res_last = idx.duplicated(keep="last")
tm.assert_numpy_array_equal(res_last, exp_last)
res_false = idx.duplicated(keep=False)
tm.assert_numpy_array_equal(res_false, exp_false)
# series
for s in [Series(case), Series(case, dtype="category")]:
res_first = s.duplicated(keep="first")
tm.assert_series_equal(res_first, Series(exp_first))
res_last = s.duplicated(keep="last")
tm.assert_series_equal(res_last, Series(exp_last))
res_false = s.duplicated(keep=False)
tm.assert_series_equal(res_false, Series(exp_false))
def test_datetime_likes(self):
dt = [
"2011-01-01",
"2011-01-02",
"2011-01-01",
"NaT",
"2011-01-03",
"2011-01-02",
"2011-01-04",
"2011-01-01",
"NaT",
"2011-01-06",
]
td = [
"1 days",
"2 days",
"1 days",
"NaT",
"3 days",
"2 days",
"4 days",
"1 days",
"NaT",
"6 days",
]
cases = [
np.array([Timestamp(d) for d in dt]),
np.array([Timestamp(d, tz="US/Eastern") for d in dt]),
np.array([pd.Period(d, freq="D") for d in dt]),
np.array([np.datetime64(d) for d in dt]),
np.array([pd.Timedelta(d) for d in td]),
]
exp_first = np.array(
[False, False, True, False, False, True, False, True, True, False]
)
exp_last = np.array(
[True, True, True, True, False, False, False, False, False, False]
)
exp_false = exp_first | exp_last
for case in cases:
res_first = algos.duplicated(case, keep="first")
tm.assert_numpy_array_equal(res_first, exp_first)
res_last = algos.duplicated(case, keep="last")
tm.assert_numpy_array_equal(res_last, exp_last)
res_false = algos.duplicated(case, keep=False)
tm.assert_numpy_array_equal(res_false, exp_false)
# index
for idx in [
Index(case),
Index(case, dtype="category"),
Index(case, dtype=object),
]:
res_first = idx.duplicated(keep="first")
tm.assert_numpy_array_equal(res_first, exp_first)
res_last = idx.duplicated(keep="last")
tm.assert_numpy_array_equal(res_last, exp_last)
res_false = idx.duplicated(keep=False)
tm.assert_numpy_array_equal(res_false, exp_false)
# series
for s in [
Series(case),
Series(case, dtype="category"),
Series(case, dtype=object),
]:
res_first = s.duplicated(keep="first")
tm.assert_series_equal(res_first, Series(exp_first))
res_last = s.duplicated(keep="last")
tm.assert_series_equal(res_last, Series(exp_last))
res_false = s.duplicated(keep=False)
tm.assert_series_equal(res_false, Series(exp_false))
def test_unique_index(self):
cases = [Index([1, 2, 3]), pd.RangeIndex(0, 3)]
for case in cases:
assert case.is_unique is True
tm.assert_numpy_array_equal(
case.duplicated(), np.array([False, False, False])
)
@pytest.mark.parametrize(
"arr, unique",
[
(
[(0, 0), (0, 1), (1, 0), (1, 1), (0, 0), (0, 1), (1, 0), (1, 1)],
[(0, 0), (0, 1), (1, 0), (1, 1)],
),
(
[("b", "c"), ("a", "b"), ("a", "b"), ("b", "c")],
[("b", "c"), ("a", "b")],
),
([("a", 1), ("b", 2), ("a", 3), ("a", 1)], [("a", 1), ("b", 2), ("a", 3)]),
],
)
def test_unique_tuples(self, arr, unique):
# https://github.com/pandas-dev/pandas/issues/16519
expected = np.empty(len(unique), dtype=object)
expected[:] = unique
result = pd.unique(arr)
tm.assert_numpy_array_equal(result, expected)
class GroupVarTestMixin:
def test_group_var_generic_1d(self):
prng = RandomState(1234)
out = (np.nan * np.ones((5, 1))).astype(self.dtype)
counts = np.zeros(5, dtype="int64")
values = 10 * prng.rand(15, 1).astype(self.dtype)
labels = np.tile(np.arange(5), (3,)).astype("int64")
expected_out = (
np.squeeze(values).reshape((5, 3), order="F").std(axis=1, ddof=1) ** 2
)[:, np.newaxis]
expected_counts = counts + 3
self.algo(out, counts, values, labels)
assert np.allclose(out, expected_out, self.rtol)
tm.assert_numpy_array_equal(counts, expected_counts)
def test_group_var_generic_1d_flat_labels(self):
prng = RandomState(1234)
out = (np.nan * np.ones((1, 1))).astype(self.dtype)
counts = np.zeros(1, dtype="int64")
values = 10 * prng.rand(5, 1).astype(self.dtype)
labels = np.zeros(5, dtype="int64")
expected_out = np.array([[values.std(ddof=1) ** 2]])
expected_counts = counts + 5
self.algo(out, counts, values, labels)
assert np.allclose(out, expected_out, self.rtol)
tm.assert_numpy_array_equal(counts, expected_counts)
def test_group_var_generic_2d_all_finite(self):
prng = RandomState(1234)
out = (np.nan * np.ones((5, 2))).astype(self.dtype)
counts = np.zeros(5, dtype="int64")
values = 10 * prng.rand(10, 2).astype(self.dtype)
labels = np.tile(np.arange(5), (2,)).astype("int64")
expected_out = np.std(values.reshape(2, 5, 2), ddof=1, axis=0) ** 2
expected_counts = counts + 2
self.algo(out, counts, values, labels)
assert np.allclose(out, expected_out, self.rtol)
tm.assert_numpy_array_equal(counts, expected_counts)
def test_group_var_generic_2d_some_nan(self):
prng = RandomState(1234)
out = (np.nan * np.ones((5, 2))).astype(self.dtype)
counts = np.zeros(5, dtype="int64")
values = 10 * prng.rand(10, 2).astype(self.dtype)
values[:, 1] = np.nan
labels = np.tile(np.arange(5), (2,)).astype("int64")
expected_out = np.vstack(
[
values[:, 0].reshape(5, 2, order="F").std(ddof=1, axis=1) ** 2,
np.nan * np.ones(5),
]
).T.astype(self.dtype)
expected_counts = counts + 2
self.algo(out, counts, values, labels)
tm.assert_almost_equal(out, expected_out, rtol=0.5e-06)
tm.assert_numpy_array_equal(counts, expected_counts)
def test_group_var_constant(self):
# Regression test from GH 10448.
out = np.array([[np.nan]], dtype=self.dtype)
counts = np.array([0], dtype="int64")
values = 0.832845131556193 * np.ones((3, 1), dtype=self.dtype)
labels = np.zeros(3, dtype="int64")
self.algo(out, counts, values, labels)
assert counts[0] == 3
assert out[0, 0] >= 0
tm.assert_almost_equal(out[0, 0], 0.0)
class TestGroupVarFloat64(GroupVarTestMixin):
__test__ = True
algo = staticmethod(libgroupby.group_var_float64)
dtype = np.float64
rtol = 1e-5
def test_group_var_large_inputs(self):
prng = RandomState(1234)
out = np.array([[np.nan]], dtype=self.dtype)
counts = np.array([0], dtype="int64")
values = (prng.rand(10 ** 6) + 10 ** 12).astype(self.dtype)
values.shape = (10 ** 6, 1)
labels = np.zeros(10 ** 6, dtype="int64")
self.algo(out, counts, values, labels)
assert counts[0] == 10 ** 6
tm.assert_almost_equal(out[0, 0], 1.0 / 12, rtol=0.5e-3)
class TestGroupVarFloat32(GroupVarTestMixin):
__test__ = True
algo = staticmethod(libgroupby.group_var_float32)
dtype = np.float32
rtol = 1e-2
class TestHashTable:
def test_string_hashtable_set_item_signature(self):
# GH#30419 fix typing in StringHashTable.set_item to prevent segfault
tbl = ht.StringHashTable()
tbl.set_item("key", 1)
assert tbl.get_item("key") == 1
with pytest.raises(TypeError, match="'key' has incorrect type"):
# key arg typed as string, not object
tbl.set_item(4, 6)
with pytest.raises(TypeError, match="'val' has incorrect type"):
tbl.get_item(4)
def test_lookup_nan(self, writable):
xs = np.array([2.718, 3.14, np.nan, -7, 5, 2, 3])
# GH 21688 ensure we can deal with readonly memory views
xs.setflags(write=writable)
m = ht.Float64HashTable()
m.map_locations(xs)
tm.assert_numpy_array_equal(m.lookup(xs), np.arange(len(xs), dtype=np.int64))
def test_add_signed_zeros(self):
# GH 21866 inconsistent hash-function for float64
# default hash-function would lead to different hash-buckets
# for 0.0 and -0.0 if there are more than 2^30 hash-buckets
# but this would mean 16GB
N = 4 # 12 * 10**8 would trigger the error, if you have enough memory
m = ht.Float64HashTable(N)
m.set_item(0.0, 0)
m.set_item(-0.0, 0)
assert len(m) == 1 # 0.0 and -0.0 are equivalent
def test_add_different_nans(self):
# GH 21866 inconsistent hash-function for float64
# create different nans from bit-patterns:
NAN1 = struct.unpack("d", struct.pack("=Q", 0x7FF8000000000000))[0]
NAN2 = struct.unpack("d", struct.pack("=Q", 0x7FF8000000000001))[0]
assert NAN1 != NAN1
assert NAN2 != NAN2
# default hash function would lead to different hash-buckets
# for NAN1 and NAN2 even if there are only 4 buckets:
m = ht.Float64HashTable()
m.set_item(NAN1, 0)
m.set_item(NAN2, 0)
assert len(m) == 1 # NAN1 and NAN2 are equivalent
def test_lookup_overflow(self, writable):
xs = np.array([1, 2, 2 ** 63], dtype=np.uint64)
# GH 21688 ensure we can deal with readonly memory views
xs.setflags(write=writable)
m = ht.UInt64HashTable()
m.map_locations(xs)
tm.assert_numpy_array_equal(m.lookup(xs), np.arange(len(xs), dtype=np.int64))
def test_get_unique(self):
s = Series([1, 2, 2 ** 63, 2 ** 63], dtype=np.uint64)
exp = np.array([1, 2, 2 ** 63], dtype=np.uint64)
tm.assert_numpy_array_equal(s.unique(), exp)
@pytest.mark.parametrize("nvals", [0, 10]) # resizing to 0 is special case
@pytest.mark.parametrize(
"htable, uniques, dtype, safely_resizes",
[
(ht.PyObjectHashTable, ht.ObjectVector, "object", False),
(ht.StringHashTable, ht.ObjectVector, "object", True),
(ht.Float64HashTable, ht.Float64Vector, "float64", False),
(ht.Int64HashTable, ht.Int64Vector, "int64", False),
(ht.UInt64HashTable, ht.UInt64Vector, "uint64", False),
],
)
def test_vector_resize(
self, writable, htable, uniques, dtype, safely_resizes, nvals
):
# Test for memory errors after internal vector
# reallocations (GH 7157)
vals = np.array(np.random.randn(1000), dtype=dtype)
# GH 21688 ensures we can deal with read-only memory views
vals.setflags(write=writable)
# initialise instances; cannot initialise in parametrization,
# as otherwise external views would be held on the array (which is
# one of the things this test is checking)
htable = htable()
uniques = uniques()
# get_labels may append to uniques
htable.get_labels(vals[:nvals], uniques, 0, -1)
# to_array() sets an external_view_exists flag on uniques.
tmp = uniques.to_array()
oldshape = tmp.shape
# subsequent get_labels() calls can no longer append to it
# (except for StringHashTables + ObjectVector)
if safely_resizes:
htable.get_labels(vals, uniques, 0, -1)
else:
with pytest.raises(ValueError, match="external reference.*"):
htable.get_labels(vals, uniques, 0, -1)
uniques.to_array() # should not raise here
assert tmp.shape == oldshape
@pytest.mark.parametrize(
"htable, tm_dtype",
[
(ht.PyObjectHashTable, "String"),
(ht.StringHashTable, "String"),
(ht.Float64HashTable, "Float"),
(ht.Int64HashTable, "Int"),
(ht.UInt64HashTable, "UInt"),
],
)
def test_hashtable_unique(self, htable, tm_dtype, writable):
# output of maker has guaranteed unique elements
maker = getattr(tm, "make" + tm_dtype + "Index")
s = Series(maker(1000))
if htable == ht.Float64HashTable:
# add NaN for float column
s.loc[500] = np.nan
elif htable == ht.PyObjectHashTable:
# use different NaN types for object column
s.loc[500:502] = [np.nan, None, pd.NaT]
# create duplicated selection
s_duplicated = s.sample(frac=3, replace=True).reset_index(drop=True)
s_duplicated.values.setflags(write=writable)
# drop_duplicates has own cython code (hash_table_func_helper.pxi)
# and is tested separately; keeps first occurrence like ht.unique()
expected_unique = s_duplicated.drop_duplicates(keep="first").values
result_unique = htable().unique(s_duplicated.values)
tm.assert_numpy_array_equal(result_unique, expected_unique)
# test return_inverse=True
# reconstruction can only succeed if the inverse is correct
result_unique, result_inverse = htable().unique(
s_duplicated.values, return_inverse=True
)
tm.assert_numpy_array_equal(result_unique, expected_unique)
reconstr = result_unique[result_inverse]
tm.assert_numpy_array_equal(reconstr, s_duplicated.values)
@pytest.mark.parametrize(
"htable, tm_dtype",
[
(ht.PyObjectHashTable, "String"),
(ht.StringHashTable, "String"),
(ht.Float64HashTable, "Float"),
(ht.Int64HashTable, "Int"),
(ht.UInt64HashTable, "UInt"),
],
)
def test_hashtable_factorize(self, htable, tm_dtype, writable):
# output of maker has guaranteed unique elements
maker = getattr(tm, "make" + tm_dtype + "Index")
s = Series(maker(1000))
if htable == ht.Float64HashTable:
# add NaN for float column
s.loc[500] = np.nan
elif htable == ht.PyObjectHashTable:
# use different NaN types for object column
s.loc[500:502] = [np.nan, None, pd.NaT]
# create duplicated selection
s_duplicated = s.sample(frac=3, replace=True).reset_index(drop=True)
s_duplicated.values.setflags(write=writable)
na_mask = s_duplicated.isna().values
result_unique, result_inverse = htable().factorize(s_duplicated.values)
# drop_duplicates has own cython code (hash_table_func_helper.pxi)
# and is tested separately; keeps first occurrence like ht.factorize()
# since factorize removes all NaNs, we do the same here
expected_unique = s_duplicated.dropna().drop_duplicates().values
tm.assert_numpy_array_equal(result_unique, expected_unique)
# reconstruction can only succeed if the inverse is correct. Since
# factorize removes the NaNs, those have to be excluded here as well
result_reconstruct = result_unique[result_inverse[~na_mask]]
expected_reconstruct = s_duplicated.dropna().values
tm.assert_numpy_array_equal(result_reconstruct, expected_reconstruct)
@pytest.mark.parametrize(
"hashtable",
[
ht.PyObjectHashTable,
ht.StringHashTable,
ht.Float64HashTable,
ht.Int64HashTable,
ht.UInt64HashTable,
],
)
def test_hashtable_large_sizehint(self, hashtable):
# GH 22729
size_hint = np.iinfo(np.uint32).max + 1
tbl = hashtable(size_hint=size_hint) # noqa
def test_quantile():
s = Series(np.random.randn(100))
result = algos.quantile(s, [0, 0.25, 0.5, 0.75, 1.0])
expected = algos.quantile(s.values, [0, 0.25, 0.5, 0.75, 1.0])
tm.assert_almost_equal(result, expected)
def test_unique_label_indices():
a = np.random.randint(1, 1 << 10, 1 << 15).astype("i8")
left = ht.unique_label_indices(a)
right = np.unique(a, return_index=True)[1]
tm.assert_numpy_array_equal(left, right, check_dtype=False)
a[np.random.choice(len(a), 10)] = -1
left = ht.unique_label_indices(a)
right = np.unique(a, return_index=True)[1][1:]
tm.assert_numpy_array_equal(left, right, check_dtype=False)
class TestRank:
@td.skip_if_no_scipy
def test_scipy_compat(self):
from scipy.stats import rankdata
def _check(arr):
mask = ~np.isfinite(arr)
arr = arr.copy()
result = libalgos.rank_1d(arr)
arr[mask] = np.inf
exp = rankdata(arr)
exp[mask] = np.nan
tm.assert_almost_equal(result, exp)
_check(np.array([np.nan, np.nan, 5.0, 5.0, 5.0, np.nan, 1, 2, 3, np.nan]))
_check(np.array([4.0, np.nan, 5.0, 5.0, 5.0, np.nan, 1, 2, 4.0, np.nan]))
def test_basic(self, writable):
exp = np.array([1, 2], dtype=np.float64)
for dtype in np.typecodes["AllInteger"]:
data = np.array([1, 100], dtype=dtype)
data.setflags(write=writable)
s = Series(data)
tm.assert_numpy_array_equal(algos.rank(s), exp)
def test_uint64_overflow(self):
exp = np.array([1, 2], dtype=np.float64)
for dtype in [np.float64, np.uint64]:
s = Series([1, 2 ** 63], dtype=dtype)
tm.assert_numpy_array_equal(algos.rank(s), exp)
def test_too_many_ndims(self):
arr = np.array([[[1, 2, 3], [4, 5, 6], [7, 8, 9]]])
msg = "Array with ndim > 2 are not supported"
with pytest.raises(TypeError, match=msg):
algos.rank(arr)
@pytest.mark.single
@pytest.mark.high_memory
@pytest.mark.parametrize(
"values",
[np.arange(2 ** 24 + 1), np.arange(2 ** 25 + 2).reshape(2 ** 24 + 1, 2)],
ids=["1d", "2d"],
)
def test_pct_max_many_rows(self, values):
# GH 18271
result = algos.rank(values, pct=True).max()
assert result == 1
def test_pad_backfill_object_segfault():
old = np.array([], dtype="O")
new = np.array([datetime(2010, 12, 31)], dtype="O")
result = libalgos.pad["object"](old, new)
expected = np.array([-1], dtype=np.int64)
tm.assert_numpy_array_equal(result, expected)
result = libalgos.pad["object"](new, old)
expected = np.array([], dtype=np.int64)
tm.assert_numpy_array_equal(result, expected)
result = libalgos.backfill["object"](old, new)
expected = np.array([-1], dtype=np.int64)
tm.assert_numpy_array_equal(result, expected)
result = libalgos.backfill["object"](new, old)
expected = np.array([], dtype=np.int64)
tm.assert_numpy_array_equal(result, expected)
class TestTseriesUtil:
def test_combineFunc(self):
pass
def test_reindex(self):
pass
def test_isna(self):
pass
def test_groupby(self):
pass
def test_groupby_withnull(self):
pass
def test_backfill(self):
old = Index([1, 5, 10])
new = Index(list(range(12)))
filler = libalgos.backfill["int64_t"](old.values, new.values)
expect_filler = np.array([0, 0, 1, 1, 1, 1, 2, 2, 2, 2, 2, -1], dtype=np.int64)
tm.assert_numpy_array_equal(filler, expect_filler)
# corner case
old = Index([1, 4])
new = Index(list(range(5, 10)))
filler = libalgos.backfill["int64_t"](old.values, new.values)
expect_filler = np.array([-1, -1, -1, -1, -1], dtype=np.int64)
tm.assert_numpy_array_equal(filler, expect_filler)
def test_pad(self):
old = Index([1, 5, 10])
new = Index(list(range(12)))
filler = libalgos.pad["int64_t"](old.values, new.values)
expect_filler = np.array([-1, 0, 0, 0, 0, 1, 1, 1, 1, 1, 2, 2], dtype=np.int64)
tm.assert_numpy_array_equal(filler, expect_filler)
# corner case
old = Index([5, 10])
new = Index(np.arange(5))
filler = libalgos.pad["int64_t"](old.values, new.values)
expect_filler = np.array([-1, -1, -1, -1, -1], dtype=np.int64)
tm.assert_numpy_array_equal(filler, expect_filler)
def test_is_lexsorted():
failure = [
np.array(
[
3,
3,
3,
3,
3,
3,
3,
3,
3,
3,
3,
3,
3,
3,
3,
3,
3,
3,
3,
3,
3,
3,
3,
3,
3,
3,
3,
3,
3,
3,
3,
2,
2,
2,
2,
2,
2,
2,
2,
2,
2,
2,
2,
2,
2,
2,
2,
2,
2,
2,
2,
2,
2,
2,
2,
2,
2,
2,
2,
2,
2,
2,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
1,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
],
dtype="int64",
),
np.array(
[
30,
29,
28,
27,
26,
25,
24,
23,
22,
21,
20,
19,
18,
17,
16,
15,
14,
13,
12,
11,
10,
9,
8,
7,
6,
5,
4,
3,
2,
1,
0,
30,
29,
28,
27,
26,
25,
24,
23,
22,
21,
20,
19,
18,
17,
16,
15,
14,
13,
12,
11,
10,
9,
8,
7,
6,
5,
4,
3,
2,
1,
0,
30,
29,
28,
27,
26,
25,
24,
23,
22,
21,
20,
19,
18,
17,
16,
15,
14,
13,
12,
11,
10,
9,
8,
7,
6,
5,
4,
3,
2,
1,
0,
30,
29,
28,
27,
26,
25,
24,
23,
22,
21,
20,
19,
18,
17,
16,
15,
14,
13,
12,
11,
10,
9,
8,
7,
6,
5,
4,
3,
2,
1,
0,
],
dtype="int64",
),
]
assert not libalgos.is_lexsorted(failure)
def test_groupsort_indexer():
a = np.random.randint(0, 1000, 100).astype(np.int64)
b = np.random.randint(0, 1000, 100).astype(np.int64)
result = libalgos.groupsort_indexer(a, 1000)[0]
# need to use a stable sort
# np.argsort returns int, groupsort_indexer
# always returns int64
expected = np.argsort(a, kind="mergesort")
expected = expected.astype(np.int64)
tm.assert_numpy_array_equal(result, expected)
# compare with lexsort
# np.lexsort returns int, groupsort_indexer
# always returns int64
key = a * 1000 + b
result = libalgos.groupsort_indexer(key, 1000000)[0]
expected = np.lexsort((b, a))
expected = expected.astype(np.int64)
tm.assert_numpy_array_equal(result, expected)
def test_infinity_sort():
# GH 13445
# numpy's argsort can be unhappy if something is less than
# itself. Instead, let's give our infinities a self-consistent
# ordering, but outside the float extended real line.
Inf = libalgos.Infinity()
NegInf = libalgos.NegInfinity()
ref_nums = [NegInf, float("-inf"), -1e100, 0, 1e100, float("inf"), Inf]
assert all(Inf >= x for x in ref_nums)
assert all(Inf > x or x is Inf for x in ref_nums)
assert Inf >= Inf and Inf == Inf
assert not Inf < Inf and not Inf > Inf
assert libalgos.Infinity() == libalgos.Infinity()
assert not libalgos.Infinity() != libalgos.Infinity()
assert all(NegInf <= x for x in ref_nums)
assert all(NegInf < x or x is NegInf for x in ref_nums)
assert NegInf <= NegInf and NegInf == NegInf
assert not NegInf < NegInf and not NegInf > NegInf
assert libalgos.NegInfinity() == libalgos.NegInfinity()
assert not libalgos.NegInfinity() != libalgos.NegInfinity()
for perm in permutations(ref_nums):
assert sorted(perm) == ref_nums
# smoke tests
np.array([libalgos.Infinity()] * 32).argsort()
np.array([libalgos.NegInfinity()] * 32).argsort()
def test_infinity_against_nan():
Inf = libalgos.Infinity()
NegInf = libalgos.NegInfinity()
assert not Inf > np.nan
assert not Inf >= np.nan
assert not Inf < np.nan
assert not Inf <= np.nan
assert not Inf == np.nan
assert Inf != np.nan
assert not NegInf > np.nan
assert not NegInf >= np.nan
assert not NegInf < np.nan
assert not NegInf <= np.nan
assert not NegInf == np.nan
assert NegInf != np.nan
def test_ensure_platform_int():
arr = np.arange(100, dtype=np.intp)
result = libalgos.ensure_platform_int(arr)
assert result is arr
def test_int64_add_overflow():
# see gh-14068
msg = "Overflow in int64 addition"
m = np.iinfo(np.int64).max
n = np.iinfo(np.int64).min
with pytest.raises(OverflowError, match=msg):
algos.checked_add_with_arr(np.array([m, m]), m)
with pytest.raises(OverflowError, match=msg):
algos.checked_add_with_arr(np.array([m, m]), np.array([m, m]))
with pytest.raises(OverflowError, match=msg):
algos.checked_add_with_arr(np.array([n, n]), n)
with pytest.raises(OverflowError, match=msg):
algos.checked_add_with_arr(np.array([n, n]), np.array([n, n]))
with pytest.raises(OverflowError, match=msg):
algos.checked_add_with_arr(np.array([m, n]), np.array([n, n]))
with pytest.raises(OverflowError, match=msg):
algos.checked_add_with_arr(
np.array([m, m]), np.array([m, m]), arr_mask=np.array([False, True])
)
with pytest.raises(OverflowError, match=msg):
algos.checked_add_with_arr(
np.array([m, m]), np.array([m, m]), b_mask=np.array([False, True])
)
with pytest.raises(OverflowError, match=msg):
algos.checked_add_with_arr(
np.array([m, m]),
np.array([m, m]),
arr_mask=np.array([False, True]),
b_mask=np.array([False, True]),
)
with pytest.raises(OverflowError, match=msg):
with tm.assert_produces_warning(RuntimeWarning):
algos.checked_add_with_arr(np.array([m, m]), np.array([np.nan, m]))
# Check that the nan boolean arrays override whether or not
# the addition overflows. We don't check the result but just
# the fact that an OverflowError is not raised.
algos.checked_add_with_arr(
np.array([m, m]), np.array([m, m]), arr_mask=np.array([True, True])
)
algos.checked_add_with_arr(
np.array([m, m]), np.array([m, m]), b_mask=np.array([True, True])
)
algos.checked_add_with_arr(
np.array([m, m]),
np.array([m, m]),
arr_mask=np.array([True, False]),
b_mask=np.array([False, True]),
)
class TestMode:
def test_no_mode(self):
exp = Series([], dtype=np.float64)
tm.assert_series_equal(algos.mode([]), exp)
def test_mode_single(self):
# GH 15714
exp_single = [1]
data_single = [1]
exp_multi = [1]
data_multi = [1, 1]
for dt in np.typecodes["AllInteger"] + np.typecodes["Float"]:
s = Series(data_single, dtype=dt)
exp = Series(exp_single, dtype=dt)
tm.assert_series_equal(algos.mode(s), exp)
s = Series(data_multi, dtype=dt)
exp = Series(exp_multi, dtype=dt)
tm.assert_series_equal(algos.mode(s), exp)
exp = Series([1], dtype=int)
tm.assert_series_equal(algos.mode([1]), exp)
exp = Series(["a", "b", "c"], dtype=object)
tm.assert_series_equal(algos.mode(["a", "b", "c"]), exp)
def test_number_mode(self):
exp_single = [1]
data_single = [1] * 5 + [2] * 3
exp_multi = [1, 3]
data_multi = [1] * 5 + [2] * 3 + [3] * 5
for dt in np.typecodes["AllInteger"] + np.typecodes["Float"]:
s = Series(data_single, dtype=dt)
exp = Series(exp_single, dtype=dt)
tm.assert_series_equal(algos.mode(s), exp)
s = Series(data_multi, dtype=dt)
exp = Series(exp_multi, dtype=dt)
tm.assert_series_equal(algos.mode(s), exp)
def test_strobj_mode(self):
exp = ["b"]
data = ["a"] * 2 + ["b"] * 3
s = Series(data, dtype="c")
exp = Series(exp, dtype="c")
tm.assert_series_equal(algos.mode(s), exp)
exp = ["bar"]
data = ["foo"] * 2 + ["bar"] * 3
for dt in [str, object]:
s = Series(data, dtype=dt)
exp = Series(exp, dtype=dt)
tm.assert_series_equal(algos.mode(s), exp)
def test_datelike_mode(self):
exp = Series(["1900-05-03", "2011-01-03", "2013-01-02"], dtype="M8[ns]")
s = Series(["2011-01-03", "2013-01-02", "1900-05-03"], dtype="M8[ns]")
tm.assert_series_equal(algos.mode(s), exp)
exp = Series(["2011-01-03", "2013-01-02"], dtype="M8[ns]")
s = Series(
["2011-01-03", "2013-01-02", "1900-05-03", "2011-01-03", "2013-01-02"],
dtype="M8[ns]",
)
tm.assert_series_equal(algos.mode(s), exp)
def test_timedelta_mode(self):
exp = Series(["-1 days", "0 days", "1 days"], dtype="timedelta64[ns]")
s = Series(["1 days", "-1 days", "0 days"], dtype="timedelta64[ns]")
tm.assert_series_equal(algos.mode(s), exp)
exp = Series(["2 min", "1 day"], dtype="timedelta64[ns]")
s = Series(
["1 day", "1 day", "-1 day", "-1 day 2 min", "2 min", "2 min"],
dtype="timedelta64[ns]",
)
tm.assert_series_equal(algos.mode(s), exp)
def test_mixed_dtype(self):
exp = Series(["foo"])
s = Series([1, "foo", "foo"])
tm.assert_series_equal(algos.mode(s), exp)
def test_uint64_overflow(self):
exp = Series([2 ** 63], dtype=np.uint64)
s = Series([1, 2 ** 63, 2 ** 63], dtype=np.uint64)
tm.assert_series_equal(algos.mode(s), exp)
exp = Series([1, 2 ** 63], dtype=np.uint64)
s = Series([1, 2 ** 63], dtype=np.uint64)
tm.assert_series_equal(algos.mode(s), exp)
def test_categorical(self):
c = Categorical([1, 2])
exp = c
tm.assert_categorical_equal(algos.mode(c), exp)
tm.assert_categorical_equal(c.mode(), exp)
c = Categorical([1, "a", "a"])
exp = Categorical(["a"], categories=[1, "a"])
tm.assert_categorical_equal(algos.mode(c), exp)
tm.assert_categorical_equal(c.mode(), exp)
c = Categorical([1, 1, 2, 3, 3])
exp = Categorical([1, 3], categories=[1, 2, 3])
tm.assert_categorical_equal(algos.mode(c), exp)
tm.assert_categorical_equal(c.mode(), exp)
def test_index(self):
idx = Index([1, 2, 3])
exp = Series([1, 2, 3], dtype=np.int64)
tm.assert_series_equal(algos.mode(idx), exp)
idx = Index([1, "a", "a"])
exp = Series(["a"], dtype=object)
tm.assert_series_equal(algos.mode(idx), exp)
idx = Index([1, 1, 2, 3, 3])
exp = Series([1, 3], dtype=np.int64)
tm.assert_series_equal(algos.mode(idx), exp)
exp = Series(["2 min", "1 day"], dtype="timedelta64[ns]")
idx = Index(
["1 day", "1 day", "-1 day", "-1 day 2 min", "2 min", "2 min"],
dtype="timedelta64[ns]",
)
tm.assert_series_equal(algos.mode(idx), exp)