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Old engine for Continuous Time Bayesian Networks. Superseded by reCTBN. 🐍 https://github.com/madlabunimib/PyCTBN
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PyCTBN/venv/lib/python3.9/site-packages/pandas/tests/series/test_api.py

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from collections import OrderedDict
import pydoc
import warnings
import numpy as np
import pytest
from pandas.util._test_decorators import async_mark
import pandas as pd
from pandas import (
Categorical,
DataFrame,
DatetimeIndex,
Index,
Series,
Timedelta,
TimedeltaIndex,
Timestamp,
date_range,
period_range,
timedelta_range,
)
import pandas._testing as tm
from pandas.core.arrays import PeriodArray
import pandas.io.formats.printing as printing
class TestSeriesMisc:
def test_scalarop_preserve_name(self, datetime_series):
result = datetime_series * 2
assert result.name == datetime_series.name
def test_copy_name(self, datetime_series):
result = datetime_series.copy()
assert result.name == datetime_series.name
def test_copy_index_name_checking(self, datetime_series):
# don't want to be able to modify the index stored elsewhere after
# making a copy
datetime_series.index.name = None
assert datetime_series.index.name is None
assert datetime_series is datetime_series
cp = datetime_series.copy()
cp.index.name = "foo"
printing.pprint_thing(datetime_series.index.name)
assert datetime_series.index.name is None
def test_append_preserve_name(self, datetime_series):
result = datetime_series[:5].append(datetime_series[5:])
assert result.name == datetime_series.name
def test_binop_maybe_preserve_name(self, datetime_series):
# names match, preserve
result = datetime_series * datetime_series
assert result.name == datetime_series.name
result = datetime_series.mul(datetime_series)
assert result.name == datetime_series.name
result = datetime_series * datetime_series[:-2]
assert result.name == datetime_series.name
# names don't match, don't preserve
cp = datetime_series.copy()
cp.name = "something else"
result = datetime_series + cp
assert result.name is None
result = datetime_series.add(cp)
assert result.name is None
ops = ["add", "sub", "mul", "div", "truediv", "floordiv", "mod", "pow"]
ops = ops + ["r" + op for op in ops]
for op in ops:
# names match, preserve
s = datetime_series.copy()
result = getattr(s, op)(s)
assert result.name == datetime_series.name
# names don't match, don't preserve
cp = datetime_series.copy()
cp.name = "changed"
result = getattr(s, op)(cp)
assert result.name is None
def test_getitem_preserve_name(self, datetime_series):
result = datetime_series[datetime_series > 0]
assert result.name == datetime_series.name
result = datetime_series[[0, 2, 4]]
assert result.name == datetime_series.name
result = datetime_series[5:10]
assert result.name == datetime_series.name
def test_pickle_datetimes(self, datetime_series):
unp_ts = self._pickle_roundtrip(datetime_series)
tm.assert_series_equal(unp_ts, datetime_series)
def test_pickle_strings(self, string_series):
unp_series = self._pickle_roundtrip(string_series)
tm.assert_series_equal(unp_series, string_series)
def _pickle_roundtrip(self, obj):
with tm.ensure_clean() as path:
obj.to_pickle(path)
unpickled = pd.read_pickle(path)
return unpickled
def test_constructor_dict(self):
d = {"a": 0.0, "b": 1.0, "c": 2.0}
result = Series(d)
expected = Series(d, index=sorted(d.keys()))
tm.assert_series_equal(result, expected)
result = Series(d, index=["b", "c", "d", "a"])
expected = Series([1, 2, np.nan, 0], index=["b", "c", "d", "a"])
tm.assert_series_equal(result, expected)
def test_constructor_subclass_dict(self, dict_subclass):
data = dict_subclass((x, 10.0 * x) for x in range(10))
series = Series(data)
expected = Series(dict(data.items()))
tm.assert_series_equal(series, expected)
def test_constructor_ordereddict(self):
# GH3283
data = OrderedDict((f"col{i}", np.random.random()) for i in range(12))
series = Series(data)
expected = Series(list(data.values()), list(data.keys()))
tm.assert_series_equal(series, expected)
# Test with subclass
class A(OrderedDict):
pass
series = Series(A(data))
tm.assert_series_equal(series, expected)
def test_constructor_dict_multiindex(self):
d = {("a", "a"): 0.0, ("b", "a"): 1.0, ("b", "c"): 2.0}
_d = sorted(d.items())
result = Series(d)
expected = Series(
[x[1] for x in _d], index=pd.MultiIndex.from_tuples([x[0] for x in _d])
)
tm.assert_series_equal(result, expected)
d["z"] = 111.0
_d.insert(0, ("z", d["z"]))
result = Series(d)
expected = Series(
[x[1] for x in _d], index=pd.Index([x[0] for x in _d], tupleize_cols=False)
)
result = result.reindex(index=expected.index)
tm.assert_series_equal(result, expected)
def test_constructor_dict_timedelta_index(self):
# GH #12169 : Resample category data with timedelta index
# construct Series from dict as data and TimedeltaIndex as index
# will result NaN in result Series data
expected = Series(
data=["A", "B", "C"], index=pd.to_timedelta([0, 10, 20], unit="s")
)
result = Series(
data={
pd.to_timedelta(0, unit="s"): "A",
pd.to_timedelta(10, unit="s"): "B",
pd.to_timedelta(20, unit="s"): "C",
},
index=pd.to_timedelta([0, 10, 20], unit="s"),
)
tm.assert_series_equal(result, expected)
def test_sparse_accessor_updates_on_inplace(self):
s = pd.Series([1, 1, 2, 3], dtype="Sparse[int]")
return_value = s.drop([0, 1], inplace=True)
assert return_value is None
assert s.sparse.density == 1.0
def test_tab_completion(self):
# GH 9910
s = Series(list("abcd"))
# Series of str values should have .str but not .dt/.cat in __dir__
assert "str" in dir(s)
assert "dt" not in dir(s)
assert "cat" not in dir(s)
# similarly for .dt
s = Series(date_range("1/1/2015", periods=5))
assert "dt" in dir(s)
assert "str" not in dir(s)
assert "cat" not in dir(s)
# Similarly for .cat, but with the twist that str and dt should be
# there if the categories are of that type first cat and str.
s = Series(list("abbcd"), dtype="category")
assert "cat" in dir(s)
assert "str" in dir(s) # as it is a string categorical
assert "dt" not in dir(s)
# similar to cat and str
s = Series(date_range("1/1/2015", periods=5)).astype("category")
assert "cat" in dir(s)
assert "str" not in dir(s)
assert "dt" in dir(s) # as it is a datetime categorical
def test_tab_completion_with_categorical(self):
# test the tab completion display
ok_for_cat = [
"categories",
"codes",
"ordered",
"set_categories",
"add_categories",
"remove_categories",
"rename_categories",
"reorder_categories",
"remove_unused_categories",
"as_ordered",
"as_unordered",
]
def get_dir(s):
results = [r for r in s.cat.__dir__() if not r.startswith("_")]
return sorted(set(results))
s = Series(list("aabbcde")).astype("category")
results = get_dir(s)
tm.assert_almost_equal(results, sorted(set(ok_for_cat)))
@pytest.mark.parametrize(
"index",
[
tm.makeUnicodeIndex(10),
tm.makeStringIndex(10),
tm.makeCategoricalIndex(10),
Index(["foo", "bar", "baz"] * 2),
tm.makeDateIndex(10),
tm.makePeriodIndex(10),
tm.makeTimedeltaIndex(10),
tm.makeIntIndex(10),
tm.makeUIntIndex(10),
tm.makeIntIndex(10),
tm.makeFloatIndex(10),
Index([True, False]),
Index([f"a{i}" for i in range(101)]),
pd.MultiIndex.from_tuples(zip("ABCD", "EFGH")),
pd.MultiIndex.from_tuples(zip([0, 1, 2, 3], "EFGH")),
],
)
def test_index_tab_completion(self, index):
# dir contains string-like values of the Index.
s = pd.Series(index=index, dtype=object)
dir_s = dir(s)
for i, x in enumerate(s.index.unique(level=0)):
if i < 100:
assert not isinstance(x, str) or not x.isidentifier() or x in dir_s
else:
assert x not in dir_s
def test_not_hashable(self):
s_empty = Series(dtype=object)
s = Series([1])
msg = "'Series' objects are mutable, thus they cannot be hashed"
with pytest.raises(TypeError, match=msg):
hash(s_empty)
with pytest.raises(TypeError, match=msg):
hash(s)
def test_contains(self, datetime_series):
tm.assert_contains_all(datetime_series.index, datetime_series)
def test_iter_datetimes(self, datetime_series):
for i, val in enumerate(datetime_series):
assert val == datetime_series[i]
def test_iter_strings(self, string_series):
for i, val in enumerate(string_series):
assert val == string_series[i]
def test_keys(self, datetime_series):
# HACK: By doing this in two stages, we avoid 2to3 wrapping the call
# to .keys() in a list()
getkeys = datetime_series.keys
assert getkeys() is datetime_series.index
def test_values(self, datetime_series):
tm.assert_almost_equal(
datetime_series.values, datetime_series, check_dtype=False
)
def test_iteritems_datetimes(self, datetime_series):
for idx, val in datetime_series.iteritems():
assert val == datetime_series[idx]
def test_iteritems_strings(self, string_series):
for idx, val in string_series.iteritems():
assert val == string_series[idx]
# assert is lazy (generators don't define reverse, lists do)
assert not hasattr(string_series.iteritems(), "reverse")
def test_items_datetimes(self, datetime_series):
for idx, val in datetime_series.items():
assert val == datetime_series[idx]
def test_items_strings(self, string_series):
for idx, val in string_series.items():
assert val == string_series[idx]
# assert is lazy (generators don't define reverse, lists do)
assert not hasattr(string_series.items(), "reverse")
def test_raise_on_info(self):
s = Series(np.random.randn(10))
msg = "'Series' object has no attribute 'info'"
with pytest.raises(AttributeError, match=msg):
s.info()
def test_copy(self):
for deep in [None, False, True]:
s = Series(np.arange(10), dtype="float64")
# default deep is True
if deep is None:
s2 = s.copy()
else:
s2 = s.copy(deep=deep)
s2[::2] = np.NaN
if deep is None or deep is True:
# Did not modify original Series
assert np.isnan(s2[0])
assert not np.isnan(s[0])
else:
# we DID modify the original Series
assert np.isnan(s2[0])
assert np.isnan(s[0])
def test_copy_tzaware(self):
# GH#11794
# copy of tz-aware
expected = Series([Timestamp("2012/01/01", tz="UTC")])
expected2 = Series([Timestamp("1999/01/01", tz="UTC")])
for deep in [None, False, True]:
s = Series([Timestamp("2012/01/01", tz="UTC")])
if deep is None:
s2 = s.copy()
else:
s2 = s.copy(deep=deep)
s2[0] = pd.Timestamp("1999/01/01", tz="UTC")
# default deep is True
if deep is None or deep is True:
# Did not modify original Series
tm.assert_series_equal(s2, expected2)
tm.assert_series_equal(s, expected)
else:
# we DID modify the original Series
tm.assert_series_equal(s2, expected2)
tm.assert_series_equal(s, expected2)
def test_axis_alias(self):
s = Series([1, 2, np.nan])
tm.assert_series_equal(s.dropna(axis="rows"), s.dropna(axis="index"))
assert s.dropna().sum("rows") == 3
assert s._get_axis_number("rows") == 0
assert s._get_axis_name("rows") == "index"
def test_class_axis(self):
# https://github.com/pandas-dev/pandas/issues/18147
# no exception and no empty docstring
assert pydoc.getdoc(Series.index)
def test_numpy_unique(self, datetime_series):
# it works!
np.unique(datetime_series)
def test_item(self):
s = Series([1])
result = s.item()
assert result == 1
assert result == s.iloc[0]
assert isinstance(result, int) # i.e. not np.int64
ser = Series([0.5], index=[3])
result = ser.item()
assert isinstance(result, float)
assert result == 0.5
ser = Series([1, 2])
msg = "can only convert an array of size 1"
with pytest.raises(ValueError, match=msg):
ser.item()
dti = pd.date_range("2016-01-01", periods=2)
with pytest.raises(ValueError, match=msg):
dti.item()
with pytest.raises(ValueError, match=msg):
Series(dti).item()
val = dti[:1].item()
assert isinstance(val, Timestamp)
val = Series(dti)[:1].item()
assert isinstance(val, Timestamp)
tdi = dti - dti
with pytest.raises(ValueError, match=msg):
tdi.item()
with pytest.raises(ValueError, match=msg):
Series(tdi).item()
val = tdi[:1].item()
assert isinstance(val, Timedelta)
val = Series(tdi)[:1].item()
assert isinstance(val, Timedelta)
# Case where ser[0] would not work
ser = Series(dti, index=[5, 6])
val = ser[:1].item()
assert val == dti[0]
def test_ndarray_compat(self):
# test numpy compat with Series as sub-class of NDFrame
tsdf = DataFrame(
np.random.randn(1000, 3),
columns=["A", "B", "C"],
index=date_range("1/1/2000", periods=1000),
)
def f(x):
return x[x.idxmax()]
result = tsdf.apply(f)
expected = tsdf.max()
tm.assert_series_equal(result, expected)
# using an ndarray like function
s = Series(np.random.randn(10))
result = Series(np.ones_like(s))
expected = Series(1, index=range(10), dtype="float64")
tm.assert_series_equal(result, expected)
# ravel
s = Series(np.random.randn(10))
tm.assert_almost_equal(s.ravel(order="F"), s.values.ravel(order="F"))
def test_str_accessor_updates_on_inplace(self):
s = pd.Series(list("abc"))
return_value = s.drop([0], inplace=True)
assert return_value is None
assert len(s.str.lower()) == 2
def test_str_attribute(self):
# GH9068
methods = ["strip", "rstrip", "lstrip"]
s = Series([" jack", "jill ", " jesse ", "frank"])
for method in methods:
expected = Series([getattr(str, method)(x) for x in s.values])
tm.assert_series_equal(getattr(Series.str, method)(s.str), expected)
# str accessor only valid with string values
s = Series(range(5))
with pytest.raises(AttributeError, match="only use .str accessor"):
s.str.repeat(2)
def test_empty_method(self):
s_empty = pd.Series(dtype=object)
assert s_empty.empty
s2 = pd.Series(index=[1], dtype=object)
for full_series in [pd.Series([1]), s2]:
assert not full_series.empty
@async_mark()
async def test_tab_complete_warning(self, ip):
# https://github.com/pandas-dev/pandas/issues/16409
pytest.importorskip("IPython", minversion="6.0.0")
from IPython.core.completer import provisionalcompleter
code = "import pandas as pd; s = pd.Series()"
await ip.run_code(code)
# TODO: remove it when Ipython updates
# GH 33567, jedi version raises Deprecation warning in Ipython
import jedi
if jedi.__version__ < "0.17.0":
warning = tm.assert_produces_warning(None)
else:
warning = tm.assert_produces_warning(
DeprecationWarning, check_stacklevel=False
)
with warning:
with provisionalcompleter("ignore"):
list(ip.Completer.completions("s.", 1))
def test_integer_series_size(self):
# GH 25580
s = Series(range(9))
assert s.size == 9
s = Series(range(9), dtype="Int64")
assert s.size == 9
def test_attrs(self):
s = pd.Series([0, 1], name="abc")
assert s.attrs == {}
s.attrs["version"] = 1
result = s + 1
assert result.attrs == {"version": 1}
class TestCategoricalSeries:
@pytest.mark.parametrize(
"method",
[
lambda x: x.cat.set_categories([1, 2, 3]),
lambda x: x.cat.reorder_categories([2, 3, 1], ordered=True),
lambda x: x.cat.rename_categories([1, 2, 3]),
lambda x: x.cat.remove_unused_categories(),
lambda x: x.cat.remove_categories([2]),
lambda x: x.cat.add_categories([4]),
lambda x: x.cat.as_ordered(),
lambda x: x.cat.as_unordered(),
],
)
def test_getname_categorical_accessor(self, method):
# GH 17509
s = Series([1, 2, 3], name="A").astype("category")
expected = "A"
result = method(s).name
assert result == expected
def test_cat_accessor(self):
s = Series(Categorical(["a", "b", np.nan, "a"]))
tm.assert_index_equal(s.cat.categories, Index(["a", "b"]))
assert not s.cat.ordered, False
exp = Categorical(["a", "b", np.nan, "a"], categories=["b", "a"])
return_value = s.cat.set_categories(["b", "a"], inplace=True)
assert return_value is None
tm.assert_categorical_equal(s.values, exp)
res = s.cat.set_categories(["b", "a"])
tm.assert_categorical_equal(res.values, exp)
s[:] = "a"
s = s.cat.remove_unused_categories()
tm.assert_index_equal(s.cat.categories, Index(["a"]))
def test_cat_accessor_api(self):
# GH 9322
from pandas.core.arrays.categorical import CategoricalAccessor
assert Series.cat is CategoricalAccessor
s = Series(list("aabbcde")).astype("category")
assert isinstance(s.cat, CategoricalAccessor)
invalid = Series([1])
with pytest.raises(AttributeError, match="only use .cat accessor"):
invalid.cat
assert not hasattr(invalid, "cat")
def test_cat_accessor_no_new_attributes(self):
# https://github.com/pandas-dev/pandas/issues/10673
c = Series(list("aabbcde")).astype("category")
with pytest.raises(AttributeError, match="You cannot add any new attribute"):
c.cat.xlabel = "a"
def test_cat_accessor_updates_on_inplace(self):
s = Series(list("abc")).astype("category")
return_value = s.drop(0, inplace=True)
assert return_value is None
return_value = s.cat.remove_unused_categories(inplace=True)
assert return_value is None
assert len(s.cat.categories) == 2
def test_categorical_delegations(self):
# invalid accessor
msg = r"Can only use \.cat accessor with a 'category' dtype"
with pytest.raises(AttributeError, match=msg):
Series([1, 2, 3]).cat
with pytest.raises(AttributeError, match=msg):
Series([1, 2, 3]).cat()
with pytest.raises(AttributeError, match=msg):
Series(["a", "b", "c"]).cat
with pytest.raises(AttributeError, match=msg):
Series(np.arange(5.0)).cat
with pytest.raises(AttributeError, match=msg):
Series([Timestamp("20130101")]).cat
# Series should delegate calls to '.categories', '.codes', '.ordered'
# and the methods '.set_categories()' 'drop_unused_categories()' to the
# categorical
s = Series(Categorical(["a", "b", "c", "a"], ordered=True))
exp_categories = Index(["a", "b", "c"])
tm.assert_index_equal(s.cat.categories, exp_categories)
s.cat.categories = [1, 2, 3]
exp_categories = Index([1, 2, 3])
tm.assert_index_equal(s.cat.categories, exp_categories)
exp_codes = Series([0, 1, 2, 0], dtype="int8")
tm.assert_series_equal(s.cat.codes, exp_codes)
assert s.cat.ordered
s = s.cat.as_unordered()
assert not s.cat.ordered
return_value = s.cat.as_ordered(inplace=True)
assert return_value is None
assert s.cat.ordered
# reorder
s = Series(Categorical(["a", "b", "c", "a"], ordered=True))
exp_categories = Index(["c", "b", "a"])
exp_values = np.array(["a", "b", "c", "a"], dtype=np.object_)
s = s.cat.set_categories(["c", "b", "a"])
tm.assert_index_equal(s.cat.categories, exp_categories)
tm.assert_numpy_array_equal(s.values.__array__(), exp_values)
tm.assert_numpy_array_equal(s.__array__(), exp_values)
# remove unused categories
s = Series(Categorical(["a", "b", "b", "a"], categories=["a", "b", "c"]))
exp_categories = Index(["a", "b"])
exp_values = np.array(["a", "b", "b", "a"], dtype=np.object_)
s = s.cat.remove_unused_categories()
tm.assert_index_equal(s.cat.categories, exp_categories)
tm.assert_numpy_array_equal(s.values.__array__(), exp_values)
tm.assert_numpy_array_equal(s.__array__(), exp_values)
# This method is likely to be confused, so test that it raises an error
# on wrong inputs:
msg = "'Series' object has no attribute 'set_categories'"
with pytest.raises(AttributeError, match=msg):
s.set_categories([4, 3, 2, 1])
# right: s.cat.set_categories([4,3,2,1])
# GH18862 (let Series.cat.rename_categories take callables)
s = Series(Categorical(["a", "b", "c", "a"], ordered=True))
result = s.cat.rename_categories(lambda x: x.upper())
expected = Series(
Categorical(["A", "B", "C", "A"], categories=["A", "B", "C"], ordered=True)
)
tm.assert_series_equal(result, expected)
def test_dt_accessor_api_for_categorical(self):
# https://github.com/pandas-dev/pandas/issues/10661
from pandas.core.indexes.accessors import Properties
s_dr = Series(date_range("1/1/2015", periods=5, tz="MET"))
c_dr = s_dr.astype("category")
s_pr = Series(period_range("1/1/2015", freq="D", periods=5))
c_pr = s_pr.astype("category")
s_tdr = Series(timedelta_range("1 days", "10 days"))
c_tdr = s_tdr.astype("category")
# only testing field (like .day)
# and bool (is_month_start)
get_ops = lambda x: x._datetimelike_ops
test_data = [
("Datetime", get_ops(DatetimeIndex), s_dr, c_dr),
("Period", get_ops(PeriodArray), s_pr, c_pr),
("Timedelta", get_ops(TimedeltaIndex), s_tdr, c_tdr),
]
assert isinstance(c_dr.dt, Properties)
special_func_defs = [
("strftime", ("%Y-%m-%d",), {}),
("tz_convert", ("EST",), {}),
("round", ("D",), {}),
("floor", ("D",), {}),
("ceil", ("D",), {}),
("asfreq", ("D",), {}),
# FIXME: don't leave commented-out
# ('tz_localize', ("UTC",), {}),
]
_special_func_names = [f[0] for f in special_func_defs]
# the series is already localized
_ignore_names = ["tz_localize", "components"]
for name, attr_names, s, c in test_data:
func_names = [
f
for f in dir(s.dt)
if not (
f.startswith("_")
or f in attr_names
or f in _special_func_names
or f in _ignore_names
)
]
func_defs = [(f, (), {}) for f in func_names]
for f_def in special_func_defs:
if f_def[0] in dir(s.dt):
func_defs.append(f_def)
for func, args, kwargs in func_defs:
with warnings.catch_warnings():
if func == "to_period":
# dropping TZ
warnings.simplefilter("ignore", UserWarning)
res = getattr(c.dt, func)(*args, **kwargs)
exp = getattr(s.dt, func)(*args, **kwargs)
tm.assert_equal(res, exp)
for attr in attr_names:
if attr in ["week", "weekofyear"]:
# GH#33595 Deprecate week and weekofyear
continue
res = getattr(c.dt, attr)
exp = getattr(s.dt, attr)
if isinstance(res, DataFrame):
tm.assert_frame_equal(res, exp)
elif isinstance(res, Series):
tm.assert_series_equal(res, exp)
else:
tm.assert_almost_equal(res, exp)
invalid = Series([1, 2, 3]).astype("category")
msg = "Can only use .dt accessor with datetimelike"
with pytest.raises(AttributeError, match=msg):
invalid.dt
assert not hasattr(invalid, "str")