Old engine for Continuous Time Bayesian Networks. Superseded by reCTBN. 🐍
https://github.com/madlabunimib/PyCTBN
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178 lines
5.7 KiB
178 lines
5.7 KiB
4 years ago
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import datetime as dt
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from string import ascii_lowercase
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import numpy as np
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import pytest
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import pandas as pd
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from pandas import DataFrame, MultiIndex, NaT, Series, Timestamp, date_range
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import pandas._testing as tm
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@pytest.mark.slow
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@pytest.mark.parametrize("n", 10 ** np.arange(2, 6))
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@pytest.mark.parametrize("m", [10, 100, 1000])
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@pytest.mark.parametrize("sort", [False, True])
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@pytest.mark.parametrize("dropna", [False, True])
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def test_series_groupby_nunique(n, m, sort, dropna):
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def check_nunique(df, keys, as_index=True):
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original_df = df.copy()
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gr = df.groupby(keys, as_index=as_index, sort=sort)
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left = gr["julie"].nunique(dropna=dropna)
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gr = df.groupby(keys, as_index=as_index, sort=sort)
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right = gr["julie"].apply(Series.nunique, dropna=dropna)
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if not as_index:
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right = right.reset_index(drop=True)
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if as_index:
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tm.assert_series_equal(left, right, check_names=False)
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else:
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tm.assert_frame_equal(left, right, check_names=False)
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tm.assert_frame_equal(df, original_df)
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days = date_range("2015-08-23", periods=10)
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frame = DataFrame(
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{
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"jim": np.random.choice(list(ascii_lowercase), n),
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"joe": np.random.choice(days, n),
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"julie": np.random.randint(0, m, n),
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}
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)
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check_nunique(frame, ["jim"])
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check_nunique(frame, ["jim", "joe"])
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frame.loc[1::17, "jim"] = None
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frame.loc[3::37, "joe"] = None
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frame.loc[7::19, "julie"] = None
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frame.loc[8::19, "julie"] = None
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frame.loc[9::19, "julie"] = None
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check_nunique(frame, ["jim"])
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check_nunique(frame, ["jim", "joe"])
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check_nunique(frame, ["jim"], as_index=False)
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check_nunique(frame, ["jim", "joe"], as_index=False)
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def test_nunique():
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df = DataFrame({"A": list("abbacc"), "B": list("abxacc"), "C": list("abbacx")})
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expected = DataFrame({"A": list("abc"), "B": [1, 2, 1], "C": [1, 1, 2]})
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result = df.groupby("A", as_index=False).nunique()
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tm.assert_frame_equal(result, expected)
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# as_index
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expected.index = list("abc")
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expected.index.name = "A"
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expected = expected.drop(columns="A")
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result = df.groupby("A").nunique()
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tm.assert_frame_equal(result, expected)
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# with na
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result = df.replace({"x": None}).groupby("A").nunique(dropna=False)
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tm.assert_frame_equal(result, expected)
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# dropna
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expected = DataFrame({"B": [1] * 3, "C": [1] * 3}, index=list("abc"))
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expected.index.name = "A"
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result = df.replace({"x": None}).groupby("A").nunique()
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tm.assert_frame_equal(result, expected)
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def test_nunique_with_object():
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# GH 11077
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data = pd.DataFrame(
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[
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[100, 1, "Alice"],
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[200, 2, "Bob"],
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[300, 3, "Charlie"],
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[-400, 4, "Dan"],
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[500, 5, "Edith"],
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],
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columns=["amount", "id", "name"],
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)
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result = data.groupby(["id", "amount"])["name"].nunique()
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index = MultiIndex.from_arrays([data.id, data.amount])
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expected = pd.Series([1] * 5, name="name", index=index)
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tm.assert_series_equal(result, expected)
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def test_nunique_with_empty_series():
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# GH 12553
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data = pd.Series(name="name", dtype=object)
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result = data.groupby(level=0).nunique()
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expected = pd.Series(name="name", dtype="int64")
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tm.assert_series_equal(result, expected)
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def test_nunique_with_timegrouper():
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# GH 13453
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test = pd.DataFrame(
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{
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"time": [
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Timestamp("2016-06-28 09:35:35"),
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Timestamp("2016-06-28 16:09:30"),
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Timestamp("2016-06-28 16:46:28"),
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],
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"data": ["1", "2", "3"],
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}
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).set_index("time")
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result = test.groupby(pd.Grouper(freq="h"))["data"].nunique()
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expected = test.groupby(pd.Grouper(freq="h"))["data"].apply(pd.Series.nunique)
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tm.assert_series_equal(result, expected)
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@pytest.mark.parametrize(
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"key, data, dropna, expected",
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[
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(
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["x", "x", "x"],
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[Timestamp("2019-01-01"), NaT, Timestamp("2019-01-01")],
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True,
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Series([1], index=pd.Index(["x"], name="key"), name="data"),
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),
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(
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["x", "x", "x"],
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[dt.date(2019, 1, 1), NaT, dt.date(2019, 1, 1)],
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True,
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Series([1], index=pd.Index(["x"], name="key"), name="data"),
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),
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(
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["x", "x", "x", "y", "y"],
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[dt.date(2019, 1, 1), NaT, dt.date(2019, 1, 1), NaT, dt.date(2019, 1, 1)],
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False,
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Series([2, 2], index=pd.Index(["x", "y"], name="key"), name="data"),
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),
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(
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["x", "x", "x", "x", "y"],
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[dt.date(2019, 1, 1), NaT, dt.date(2019, 1, 1), NaT, dt.date(2019, 1, 1)],
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False,
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Series([2, 1], index=pd.Index(["x", "y"], name="key"), name="data"),
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),
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],
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)
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def test_nunique_with_NaT(key, data, dropna, expected):
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# GH 27951
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df = pd.DataFrame({"key": key, "data": data})
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result = df.groupby(["key"])["data"].nunique(dropna=dropna)
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tm.assert_series_equal(result, expected)
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def test_nunique_preserves_column_level_names():
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# GH 23222
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test = pd.DataFrame([1, 2, 2], columns=pd.Index(["A"], name="level_0"))
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result = test.groupby([0, 0, 0]).nunique()
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expected = pd.DataFrame([2], columns=test.columns)
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tm.assert_frame_equal(result, expected)
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def test_nunique_transform_with_datetime():
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# GH 35109 - transform with nunique on datetimes results in integers
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df = pd.DataFrame(date_range("2008-12-31", "2009-01-02"), columns=["date"])
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result = df.groupby([0, 0, 1])["date"].transform("nunique")
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expected = pd.Series([2, 2, 1], name="date")
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tm.assert_series_equal(result, expected)
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