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Old engine for Continuous Time Bayesian Networks. Superseded by reCTBN. 🐍 https://github.com/madlabunimib/PyCTBN
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PyCTBN/venv/lib/python3.9/site-packages/networkx/utils/mapped_queue.py

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"""Priority queue class with updatable priorities.
"""
import heapq
__all__ = ["MappedQueue"]
class MappedQueue:
"""The MappedQueue class implements an efficient minimum heap. The
smallest element can be popped in O(1) time, new elements can be pushed
in O(log n) time, and any element can be removed or updated in O(log n)
time. The queue cannot contain duplicate elements and an attempt to push an
element already in the queue will have no effect.
MappedQueue complements the heapq package from the python standard
library. While MappedQueue is designed for maximum compatibility with
heapq, it has slightly different functionality.
Examples
--------
A `MappedQueue` can be created empty or optionally given an array of
initial elements. Calling `push()` will add an element and calling `pop()`
will remove and return the smallest element.
>>> q = MappedQueue([916, 50, 4609, 493, 237])
>>> q.push(1310)
True
>>> x = [q.pop() for i in range(len(q.h))]
>>> x
[50, 237, 493, 916, 1310, 4609]
Elements can also be updated or removed from anywhere in the queue.
>>> q = MappedQueue([916, 50, 4609, 493, 237])
>>> q.remove(493)
>>> q.update(237, 1117)
>>> x = [q.pop() for i in range(len(q.h))]
>>> x
[50, 916, 1117, 4609]
References
----------
.. [1] Cormen, T. H., Leiserson, C. E., Rivest, R. L., & Stein, C. (2001).
Introduction to algorithms second edition.
.. [2] Knuth, D. E. (1997). The art of computer programming (Vol. 3).
Pearson Education.
"""
def __init__(self, data=[]):
"""Priority queue class with updatable priorities.
"""
self.h = list(data)
self.d = dict()
self._heapify()
def __len__(self):
return len(self.h)
def _heapify(self):
"""Restore heap invariant and recalculate map."""
heapq.heapify(self.h)
self.d = {elt: pos for pos, elt in enumerate(self.h)}
if len(self.h) != len(self.d):
raise AssertionError("Heap contains duplicate elements")
def push(self, elt):
"""Add an element to the queue."""
# If element is already in queue, do nothing
if elt in self.d:
return False
# Add element to heap and dict
pos = len(self.h)
self.h.append(elt)
self.d[elt] = pos
# Restore invariant by sifting down
self._siftdown(pos)
return True
def pop(self):
"""Remove and return the smallest element in the queue."""
# Remove smallest element
elt = self.h[0]
del self.d[elt]
# If elt is last item, remove and return
if len(self.h) == 1:
self.h.pop()
return elt
# Replace root with last element
last = self.h.pop()
self.h[0] = last
self.d[last] = 0
# Restore invariant by sifting up, then down
pos = self._siftup(0)
self._siftdown(pos)
# Return smallest element
return elt
def update(self, elt, new):
"""Replace an element in the queue with a new one."""
# Replace
pos = self.d[elt]
self.h[pos] = new
del self.d[elt]
self.d[new] = pos
# Restore invariant by sifting up, then down
pos = self._siftup(pos)
self._siftdown(pos)
def remove(self, elt):
"""Remove an element from the queue."""
# Find and remove element
try:
pos = self.d[elt]
del self.d[elt]
except KeyError:
# Not in queue
raise
# If elt is last item, remove and return
if pos == len(self.h) - 1:
self.h.pop()
return
# Replace elt with last element
last = self.h.pop()
self.h[pos] = last
self.d[last] = pos
# Restore invariant by sifting up, then down
pos = self._siftup(pos)
self._siftdown(pos)
def _siftup(self, pos):
"""Move element at pos down to a leaf by repeatedly moving the smaller
child up."""
h, d = self.h, self.d
elt = h[pos]
# Continue until element is in a leaf
end_pos = len(h)
left_pos = (pos << 1) + 1
while left_pos < end_pos:
# Left child is guaranteed to exist by loop predicate
left = h[left_pos]
try:
right_pos = left_pos + 1
right = h[right_pos]
# Out-of-place, swap with left unless right is smaller
if right < left:
h[pos], h[right_pos] = right, elt
pos, right_pos = right_pos, pos
d[elt], d[right] = pos, right_pos
else:
h[pos], h[left_pos] = left, elt
pos, left_pos = left_pos, pos
d[elt], d[left] = pos, left_pos
except IndexError:
# Left leaf is the end of the heap, swap
h[pos], h[left_pos] = left, elt
pos, left_pos = left_pos, pos
d[elt], d[left] = pos, left_pos
# Update left_pos
left_pos = (pos << 1) + 1
return pos
def _siftdown(self, pos):
"""Restore invariant by repeatedly replacing out-of-place element with
its parent."""
h, d = self.h, self.d
elt = h[pos]
# Continue until element is at root
while pos > 0:
parent_pos = (pos - 1) >> 1
parent = h[parent_pos]
if parent > elt:
# Swap out-of-place element with parent
h[parent_pos], h[pos] = elt, parent
parent_pos, pos = pos, parent_pos
d[elt] = pos
d[parent] = parent_pos
else:
# Invariant is satisfied
break
return pos