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Old engine for Continuous Time Bayesian Networks. Superseded by reCTBN. 🐍 https://github.com/madlabunimib/PyCTBN
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PyCTBN/main_package/classes/structure_graph/structure.py

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import typing as ty
import numpy as np
class Structure(object):
"""Contains all the infos about the network structure(nodes labels, nodes caridinalites, edges, indexes)
:param nodes_labels_list: the symbolic names of the variables
:type nodes_labels_list: List
:param nodes_indexes_arr: the indexes of the nodes
:type nodes_indexes_arr: numpy.ndArray
:param nodes_vals_arr: the cardinalites of the nodes
:type nodes_vals_arr: numpy.ndArray
:param edges_list: the edges of the network
:type edges_list: List
:param total_variables_number: the total number of variables in the dataset
:type total_variables_number: int
"""
def __init__(self, nodes_labels_list: ty.List, nodes_indexes_arr: np.ndarray, nodes_vals_arr: np.ndarray,
edges_list: ty.List, total_variables_number: int):
"""Constructor Method
"""
self._nodes_labels_list = nodes_labels_list
self._nodes_indexes_arr = nodes_indexes_arr
self._nodes_vals_arr = nodes_vals_arr
self._edges_list = edges_list
self._total_variables_number = total_variables_number
def remove_node(self, node_id: str) -> None:
"""Remove the node ``node_id`` from all the class members.
The class member ``_total_variables_number`` since it refers to the total number of variables in the dataset.
"""
node_positional_indx = self._nodes_labels_list.index(node_id)
del self._nodes_labels_list[node_positional_indx]
self._nodes_indexes_arr = np.delete(self._nodes_indexes_arr, node_positional_indx)
self._nodes_vals_arr = np.delete(self._nodes_vals_arr, node_positional_indx)
self._edges_list = [(from_node, to_node) for (from_node, to_node) in self._edges_list if (from_node != node_id
and to_node != node_id)]
@property
def edges(self) -> ty.List:
return self._edges_list
@property
def nodes_labels(self) -> ty.List:
return self._nodes_labels_list
@property
def nodes_indexes(self) -> np.ndarray:
return self._nodes_indexes_arr
@property
def nodes_values(self) -> np.ndarray:
return self._nodes_vals_arr
@property
def total_variables_number(self) -> int:
return self._total_variables_number
def get_node_id(self, node_indx: int) -> str:
"""Given the ``node_index`` returns the node label.
:param node_indx: the node index
:type node_indx: int
:return: the node label
:rtype: string
"""
return self._nodes_labels_list[node_indx]
def clean_structure_edges(self):
self._edges_list = list()
def add_edge(self,edge: tuple):
self._edges_list.append(tuple)
print(self._edges_list)
def remove_edge(self,edge: tuple):
self._edges_list.remove(tuple)
def contains_edge(self,edge:tuple) -> bool:
return edge in self._edges_list
def get_node_indx(self, node_id: str) -> int:
"""Given the ``node_index`` returns the node label.
:param node_id: the node label
:type node_id: string
:return: the node index
:rtype: int
"""
pos_indx = self._nodes_labels_list.index(node_id)
return self._nodes_indexes_arr[pos_indx]
def get_positional_node_indx(self, node_id: str) -> int:
return self._nodes_labels_list.index(node_id)
def get_states_number(self, node: str) -> int:
"""Given the node label ``node`` returns the cardinality of the node.
:param node: the node label
:type node: string
:return: the node cardinality
:rtype: int
"""
pos_indx = self._nodes_labels_list.index(node)
return self._nodes_vals_arr[pos_indx]
def __repr__(self):
return "Variables:\n" + str(self._nodes_labels_list) +"\nValues:\n"+ str(self._nodes_vals_arr) +\
"\nEdges: \n" + str(self._edges_list)
def __eq__(self, other):
"""Overrides the default implementation"""
if isinstance(other, Structure):
return set(self._nodes_labels_list) == set(other._nodes_labels_list) and \
np.array_equal(self._nodes_vals_arr, other._nodes_vals_arr) and \
np.array_equal(self._nodes_indexes_arr, other._nodes_indexes_arr) and \
self._edges_list == other._edges_list
return False
4 years ago