unimib-thesis-mad
/
PyCTBN
Archived
1
0
Fork 0
Code Releases Activity
Old engine for Continuous Time Bayesian Networks. Superseded by reCTBN. 🐍 https://github.com/madlabunimib/PyCTBN
You can not select more than 25 topics Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
This repo is archived. You can view files and clone it, but cannot push or open issues/pull-requests.
95 Commits
3 Branches
0 Tags
106 MiB
Tag: Branch: Tree: better_develop
Branches Tags
${ item.name }
Create tag ${ searchTerm }
Create branch ${ searchTerm }
from 'better_develop'
${ noResults }
PyCTBN/docs/genindex.html

688 lines
31 KiB
Raw Permalink Normal View History Unescape

Add docs folder for GPages
4 years ago
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.1//EN" "http://www.w3.org/TR/xhtml11/DTD/xhtml11.dtd">
<html xml:lang="" lang="" version="-//W3C//DTD XHTML 1.1//EN" xmlns="http://www.w3.org/1999/xhtml">
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>Index &mdash; PyCTBN 1.0 documentation</title>
<link href='https://fonts.googleapis.com/css?family=Lato:400,700,400italic,700italic|Roboto+Slab:400,700|Inconsolata:400,700' rel='stylesheet' type='text/css'/>
<link rel="stylesheet" href="_static/css/pdj.css" type="text/css" />
<link rel="index" title="Index"
href="#"/>
<link rel="search" title="Search" href="search.html"/>
<link rel="top" title="PyCTBN 1.0 documentation" href="index.html"/>
<meta http-equiv="content-type" content="text/html; charset=utf-8" />
<meta http-equiv="cache-control" content="public" />
<meta name="robots" content="follow, all" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<!-- Add jQuery library -->
<script type="text/javascript" src="http://code.jquery.com/jquery-latest.min.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/modernizr/2.6.2/modernizr.min.js"></script>
</head>
<body class="wy-body-for-nav" role="document">
<div class="wy-grid-for-nav">
<nav data-toggle="wy-nav-shift" class="wy-nav-side">
<div class="wy-side-nav-search">
<a href="index.html" class="fa fa-home"> PyCTBN </a>
<div role="search">
<form id ="rtd-search-form" class="wy-form"
action="search.html" method="get">
<input type="text" name="q" placeholder="Search docs" />
<input type="hidden" name="check_keywords" value="yes" />
<input type="hidden" name="area" value="default" />
</form>
</div>
</div>
<div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="main navigation">
<p class="caption"><span class="caption-text">Contents:</span></p>
<ul>
<li class="toctree-l1"><a class="reference internal" href="classes.html">classes package</a><ul>
<li class="toctree-l2"><a class="reference internal" href="classes.html#submodules">Submodules</a></li>
<li class="toctree-l2"><a class="reference internal" href="classes.html#module-classes.abstract_importer">classes.abstract_importer module</a></li>
<li class="toctree-l2"><a class="reference internal" href="classes.html#module-classes.cache">classes.cache module</a></li>
<li class="toctree-l2"><a class="reference internal" href="classes.html#module-classes.conditional_intensity_matrix">classes.conditional_intensity_matrix module</a></li>
<li class="toctree-l2"><a class="reference internal" href="classes.html#module-classes.json_importer">classes.json_importer module</a></li>
<li class="toctree-l2"><a class="reference internal" href="classes.html#module-classes.network_graph">classes.network_graph module</a></li>
<li class="toctree-l2"><a class="reference internal" href="classes.html#module-classes.parameters_estimator">classes.parameters_estimator module</a></li>
<li class="toctree-l2"><a class="reference internal" href="classes.html#module-classes.sample_path">classes.sample_path module</a></li>
<li class="toctree-l2"><a class="reference internal" href="classes.html#module-classes.set_of_cims">classes.set_of_cims module</a></li>
<li class="toctree-l2"><a class="reference internal" href="classes.html#module-classes.structure">classes.structure module</a></li>
<li class="toctree-l2"><a class="reference internal" href="classes.html#module-classes.structure_estimator">classes.structure_estimator module</a></li>
<li class="toctree-l2"><a class="reference internal" href="classes.html#module-classes.trajectory">classes.trajectory module</a></li>
<li class="toctree-l2"><a class="reference internal" href="classes.html#module-classes">Module contents</a></li>
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="examples.html">Examples</a><ul>
Change one_iteration_ctpc_algo method signature
4 years ago
<li class="toctree-l2"><a class="reference internal" href="examples.html#installation-usage">Installation/Usage</a></li>
Add docs folder for GPages
4 years ago
<li class="toctree-l2"><a class="reference internal" href="examples.html#implementing-your-own-data-importer">Implementing your own data importer</a></li>
<li class="toctree-l2"><a class="reference internal" href="examples.html#parameters-estimation-example">Parameters Estimation Example</a></li>
<li class="toctree-l2"><a class="reference internal" href="examples.html#structure-estimation-example">Structure Estimation Example</a></li>
</ul>
</li>
</ul>
</div>
&nbsp;
</nav>
<section data-toggle="wy-nav-shift" class="wy-nav-content-wrap">
<nav class="wy-nav-top" id="barra-mobile" role="navigation" aria-label="top navigation">
<i data-toggle="wy-nav-top" class="fa fa-bars"></i>
<a href="#">Porão do Juca</a>
</nav>
<div class="wy-nav-content">
<div class="fundo-claro">
</div>
<div class="fundo-escuro">
</div>
<div class="rst-content">
<div role="navigation" aria-label="breadcrumbs navigation">
<!-- <ul class="wy-breadcrumbs"> -->
<!-- <li><a href="#">Docs</a> &raquo;</li> -->
<!-- <li>Features</li> -->
<!-- <li class="wy-breadcrumbs-aside"> -->
<!-- <a href="_sources/index.txt" rel="nofollow"> View page source</a> -->
<!-- </li> -->
<!-- </ul> -->
<!-- <hr/> -->
</div>
<div role="main" class="">
<div id="content" class="hfeed entry-container hentry">
<h1 id="index">Index</h1>
<div class="genindex-jumpbox">
<a href="#A"><strong>A</strong></a>
| <a href="#B"><strong>B</strong></a>
| <a href="#C"><strong>C</strong></a>
| <a href="#D"><strong>D</strong></a>
| <a href="#E"><strong>E</strong></a>
| <a href="#F"><strong>F</strong></a>
| <a href="#G"><strong>G</strong></a>
Refactor AbstractImporter constructor to accept concatenated_samples dataframe/matrix
4 years ago
| <a href="#H"><strong>H</strong></a>
Add docs folder for GPages
4 years ago
| <a href="#I"><strong>I</strong></a>
| <a href="#J"><strong>J</strong></a>
| <a href="#M"><strong>M</strong></a>
| <a href="#N"><strong>N</strong></a>
| <a href="#O"><strong>O</strong></a>
| <a href="#P"><strong>P</strong></a>
| <a href="#R"><strong>R</strong></a>
| <a href="#S"><strong>S</strong></a>
| <a href="#T"><strong>T</strong></a>
| <a href="#V"><strong>V</strong></a>
</div>
<h2 id="A">A</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="classes.html#classes.abstract_importer.AbstractImporter">AbstractImporter (class in classes.abstract_importer)</a>
</li>
<li><a href="classes.html#classes.set_of_cims.SetOfCims.actual_cims">actual_cims() (classes.set_of_cims.SetOfCims property)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="classes.html#classes.network_graph.NetworkGraph.add_edges">add_edges() (classes.network_graph.NetworkGraph method)</a>
</li>
<li><a href="classes.html#classes.network_graph.NetworkGraph.add_nodes">add_nodes() (classes.network_graph.NetworkGraph method)</a>
</li>
<li><a href="classes.html#classes.structure_estimator.StructureEstimator.adjacency_matrix">adjacency_matrix() (classes.structure_estimator.StructureEstimator method)</a>
</li>
</ul></td>
</tr></table>
<h2 id="B">B</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="classes.html#classes.set_of_cims.SetOfCims.build_cims">build_cims() (classes.set_of_cims.SetOfCims method)</a>
</li>
<li><a href="classes.html#classes.structure_estimator.StructureEstimator.build_complete_graph">build_complete_graph() (classes.structure_estimator.StructureEstimator static method)</a>
</li>
<li><a href="classes.html#classes.abstract_importer.AbstractImporter.build_list_of_samples_array">build_list_of_samples_array() (classes.abstract_importer.AbstractImporter method)</a>
</li>
<li><a href="classes.html#classes.network_graph.NetworkGraph.build_p_comb_structure_for_a_node">build_p_comb_structure_for_a_node() (classes.network_graph.NetworkGraph static method)</a>
</li>
<li><a href="classes.html#classes.abstract_importer.AbstractImporter.build_sorter">build_sorter() (classes.abstract_importer.AbstractImporter method)</a>
<ul>
<li><a href="classes.html#classes.json_importer.JsonImporter.build_sorter">(classes.json_importer.JsonImporter method)</a>
</li>
</ul></li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="classes.html#classes.sample_path.SamplePath.build_structure">build_structure() (classes.sample_path.SamplePath method)</a>
</li>
<li><a href="classes.html#classes.network_graph.NetworkGraph.build_time_columns_filtering_for_a_node">build_time_columns_filtering_for_a_node() (classes.network_graph.NetworkGraph static method)</a>
</li>
<li><a href="classes.html#classes.network_graph.NetworkGraph.build_time_scalar_indexing_structure_for_a_node">build_time_scalar_indexing_structure_for_a_node() (classes.network_graph.NetworkGraph static method)</a>
</li>
<li><a href="classes.html#classes.set_of_cims.SetOfCims.build_times_and_transitions_structures">build_times_and_transitions_structures() (classes.set_of_cims.SetOfCims method)</a>
</li>
<li><a href="classes.html#classes.sample_path.SamplePath.build_trajectories">build_trajectories() (classes.sample_path.SamplePath method)</a>
</li>
<li><a href="classes.html#classes.network_graph.NetworkGraph.build_transition_filtering_for_a_node">build_transition_filtering_for_a_node() (classes.network_graph.NetworkGraph static method)</a>
</li>
<li><a href="classes.html#classes.network_graph.NetworkGraph.build_transition_scalar_indexing_structure_for_a_node">build_transition_scalar_indexing_structure_for_a_node() (classes.network_graph.NetworkGraph static method)</a>
</li>
</ul></td>
</tr></table>
<h2 id="C">C</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="classes.html#classes.cache.Cache">Cache (class in classes.cache)</a>
</li>
<li><a href="classes.html#classes.conditional_intensity_matrix.ConditionalIntensityMatrix.cim">cim() (classes.conditional_intensity_matrix.ConditionalIntensityMatrix property)</a>
</li>
<li>
classes
<ul>
<li><a href="classes.html#module-classes">module</a>
</li>
</ul></li>
<li>
classes.abstract_importer
<ul>
<li><a href="classes.html#module-classes.abstract_importer">module</a>
</li>
</ul></li>
<li>
classes.cache
<ul>
<li><a href="classes.html#module-classes.cache">module</a>
</li>
</ul></li>
<li>
classes.conditional_intensity_matrix
<ul>
<li><a href="classes.html#module-classes.conditional_intensity_matrix">module</a>
</li>
</ul></li>
<li>
classes.json_importer
<ul>
<li><a href="classes.html#module-classes.json_importer">module</a>
</li>
</ul></li>
<li>
classes.network_graph
<ul>
<li><a href="classes.html#module-classes.network_graph">module</a>
</li>
</ul></li>
<li>
classes.parameters_estimator
<ul>
<li><a href="classes.html#module-classes.parameters_estimator">module</a>
</li>
</ul></li>
<li>
classes.sample_path
<ul>
<li><a href="classes.html#module-classes.sample_path">module</a>
</li>
</ul></li>
<li>
classes.set_of_cims
<ul>
<li><a href="classes.html#module-classes.set_of_cims">module</a>
</li>
</ul></li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li>
classes.structure
<ul>
<li><a href="classes.html#module-classes.structure">module</a>
</li>
</ul></li>
<li>
classes.structure_estimator
<ul>
<li><a href="classes.html#module-classes.structure_estimator">module</a>
</li>
</ul></li>
<li>
classes.trajectory
<ul>
<li><a href="classes.html#module-classes.trajectory">module</a>
</li>
</ul></li>
<li><a href="classes.html#classes.cache.Cache.clear">clear() (classes.cache.Cache method)</a>
</li>
<li><a href="classes.html#classes.abstract_importer.AbstractImporter.clear_concatenated_frame">clear_concatenated_frame() (classes.abstract_importer.AbstractImporter method)</a>
</li>
<li><a href="classes.html#classes.json_importer.JsonImporter.clear_data_frame_list">clear_data_frame_list() (classes.json_importer.JsonImporter method)</a>
</li>
<li><a href="classes.html#classes.network_graph.NetworkGraph.clear_indexing_filtering_structures">clear_indexing_filtering_structures() (classes.network_graph.NetworkGraph method)</a>
</li>
<li><a href="classes.html#classes.structure_estimator.StructureEstimator.complete_test">complete_test() (classes.structure_estimator.StructureEstimator method)</a>
</li>
<li><a href="classes.html#classes.trajectory.Trajectory.complete_trajectory">complete_trajectory() (classes.trajectory.Trajectory property)</a>
</li>
<li><a href="classes.html#classes.conditional_intensity_matrix.ConditionalIntensityMatrix.compute_cim_coefficients">compute_cim_coefficients() (classes.conditional_intensity_matrix.ConditionalIntensityMatrix method)</a>
</li>
<li><a href="classes.html#classes.parameters_estimator.ParametersEstimator.compute_parameters_for_node">compute_parameters_for_node() (classes.parameters_estimator.ParametersEstimator method)</a>
</li>
<li><a href="classes.html#classes.abstract_importer.AbstractImporter.compute_row_delta_in_all_samples_frames">compute_row_delta_in_all_samples_frames() (classes.abstract_importer.AbstractImporter method)</a>
</li>
<li><a href="classes.html#classes.abstract_importer.AbstractImporter.compute_row_delta_sigle_samples_frame">compute_row_delta_sigle_samples_frame() (classes.abstract_importer.AbstractImporter method)</a>
</li>
<li><a href="classes.html#classes.parameters_estimator.ParametersEstimator.compute_state_res_time_for_node">compute_state_res_time_for_node() (classes.parameters_estimator.ParametersEstimator static method)</a>
</li>
<li><a href="classes.html#classes.parameters_estimator.ParametersEstimator.compute_state_transitions_for_a_node">compute_state_transitions_for_a_node() (classes.parameters_estimator.ParametersEstimator static method)</a>
</li>
<li><a href="classes.html#classes.abstract_importer.AbstractImporter.concatenated_samples">concatenated_samples() (classes.abstract_importer.AbstractImporter property)</a>
</li>
<li><a href="classes.html#classes.conditional_intensity_matrix.ConditionalIntensityMatrix">ConditionalIntensityMatrix (class in classes.conditional_intensity_matrix)</a>
</li>
<li><a href="classes.html#classes.structure_estimator.StructureEstimator.ctpc_algorithm">ctpc_algorithm() (classes.structure_estimator.StructureEstimator method)</a>
</li>
</ul></td>
</tr></table>
<h2 id="D">D</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="classes.html#classes.abstract_importer.AbstractImporter.dataset_id">dataset_id() (classes.abstract_importer.AbstractImporter method)</a>
<ul>
<li><a href="classes.html#classes.json_importer.JsonImporter.dataset_id">(classes.json_importer.JsonImporter method)</a>
</li>
</ul></li>
</ul></td>
</tr></table>
<h2 id="E">E</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="classes.html#classes.network_graph.NetworkGraph.edges">edges() (classes.network_graph.NetworkGraph property)</a>
<ul>
<li><a href="classes.html#classes.structure.Structure.edges">(classes.structure.Structure property)</a>
</li>
</ul></li>
</ul></td>
</tr></table>
<h2 id="F">F</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="classes.html#classes.network_graph.NetworkGraph.fast_init">fast_init() (classes.network_graph.NetworkGraph method)</a>
<ul>
<li><a href="classes.html#classes.parameters_estimator.ParametersEstimator.fast_init">(classes.parameters_estimator.ParametersEstimator method)</a>
</li>
</ul></li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="classes.html#classes.abstract_importer.AbstractImporter.file_path">file_path() (classes.abstract_importer.AbstractImporter property)</a>
</li>
<li><a href="classes.html#classes.set_of_cims.SetOfCims.filter_cims_with_mask">filter_cims_with_mask() (classes.set_of_cims.SetOfCims method)</a>
</li>
<li><a href="classes.html#classes.cache.Cache.find">find() (classes.cache.Cache method)</a>
</li>
</ul></td>
</tr></table>
<h2 id="G">G</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="classes.html#classes.structure_estimator.StructureEstimator.generate_possible_sub_sets_of_size">generate_possible_sub_sets_of_size() (classes.structure_estimator.StructureEstimator static method)</a>
</li>
<li><a href="classes.html#classes.set_of_cims.SetOfCims.get_cims_number">get_cims_number() (classes.set_of_cims.SetOfCims method)</a>
</li>
<li><a href="classes.html#classes.structure.Structure.get_node_id">get_node_id() (classes.structure.Structure method)</a>
</li>
<li><a href="classes.html#classes.network_graph.NetworkGraph.get_node_indx">get_node_indx() (classes.network_graph.NetworkGraph method)</a>
<ul>
<li><a href="classes.html#classes.structure.Structure.get_node_indx">(classes.structure.Structure method)</a>
</li>
</ul></li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="classes.html#classes.network_graph.NetworkGraph.get_ordered_by_indx_set_of_parents">get_ordered_by_indx_set_of_parents() (classes.network_graph.NetworkGraph method)</a>
</li>
<li><a href="classes.html#classes.network_graph.NetworkGraph.get_parents_by_id">get_parents_by_id() (classes.network_graph.NetworkGraph method)</a>
</li>
<li><a href="classes.html#classes.network_graph.NetworkGraph.get_positional_node_indx">get_positional_node_indx() (classes.network_graph.NetworkGraph method)</a>
<ul>
<li><a href="classes.html#classes.structure.Structure.get_positional_node_indx">(classes.structure.Structure method)</a>
</li>
</ul></li>
<li><a href="classes.html#classes.network_graph.NetworkGraph.get_states_number">get_states_number() (classes.network_graph.NetworkGraph method)</a>
<ul>
<li><a href="classes.html#classes.structure.Structure.get_states_number">(classes.structure.Structure method)</a>
</li>
</ul></li>
</ul></td>
</tr></table>
Refactor AbstractImporter constructor to accept concatenated_samples dataframe/matrix
4 years ago
<h2 id="H">H</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="classes.html#classes.sample_path.SamplePath.has_prior_net_structure">has_prior_net_structure() (classes.sample_path.SamplePath property)</a>
</li>
</ul></td>
</tr></table>
Add docs folder for GPages
4 years ago
<h2 id="I">I</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="classes.html#classes.json_importer.JsonImporter.import_data">import_data() (classes.json_importer.JsonImporter method)</a>
</li>
<li><a href="classes.html#classes.json_importer.JsonImporter.import_sampled_cims">import_sampled_cims() (classes.json_importer.JsonImporter method)</a>
</li>
<li><a href="classes.html#classes.json_importer.JsonImporter.import_structure">import_structure() (classes.json_importer.JsonImporter method)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="classes.html#classes.json_importer.JsonImporter.import_trajectories">import_trajectories() (classes.json_importer.JsonImporter method)</a>
</li>
<li><a href="classes.html#classes.json_importer.JsonImporter.import_variables">import_variables() (classes.json_importer.JsonImporter method)</a>
</li>
<li><a href="classes.html#classes.structure_estimator.StructureEstimator.independence_test">independence_test() (classes.structure_estimator.StructureEstimator method)</a>
</li>
</ul></td>
</tr></table>
<h2 id="J">J</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="classes.html#classes.json_importer.JsonImporter">JsonImporter (class in classes.json_importer)</a>
</li>
</ul></td>
</tr></table>
<h2 id="M">M</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li>
module
<ul>
<li><a href="classes.html#module-classes">classes</a>
</li>
<li><a href="classes.html#module-classes.abstract_importer">classes.abstract_importer</a>
</li>
<li><a href="classes.html#module-classes.cache">classes.cache</a>
</li>
<li><a href="classes.html#module-classes.conditional_intensity_matrix">classes.conditional_intensity_matrix</a>
</li>
<li><a href="classes.html#module-classes.json_importer">classes.json_importer</a>
</li>
<li><a href="classes.html#module-classes.network_graph">classes.network_graph</a>
</li>
<li><a href="classes.html#module-classes.parameters_estimator">classes.parameters_estimator</a>
</li>
<li><a href="classes.html#module-classes.sample_path">classes.sample_path</a>
</li>
<li><a href="classes.html#module-classes.set_of_cims">classes.set_of_cims</a>
</li>
<li><a href="classes.html#module-classes.structure">classes.structure</a>
</li>
<li><a href="classes.html#module-classes.structure_estimator">classes.structure_estimator</a>
</li>
<li><a href="classes.html#module-classes.trajectory">classes.trajectory</a>
</li>
</ul></li>
</ul></td>
</tr></table>
<h2 id="N">N</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="classes.html#classes.network_graph.NetworkGraph">NetworkGraph (class in classes.network_graph)</a>
</li>
<li><a href="classes.html#classes.network_graph.NetworkGraph.nodes">nodes() (classes.network_graph.NetworkGraph property)</a>
</li>
<li><a href="classes.html#classes.network_graph.NetworkGraph.nodes_indexes">nodes_indexes() (classes.network_graph.NetworkGraph property)</a>
<ul>
<li><a href="classes.html#classes.structure.Structure.nodes_indexes">(classes.structure.Structure property)</a>
</li>
</ul></li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="classes.html#classes.structure.Structure.nodes_labels">nodes_labels() (classes.structure.Structure property)</a>
</li>
<li><a href="classes.html#classes.network_graph.NetworkGraph.nodes_values">nodes_values() (classes.network_graph.NetworkGraph property)</a>
<ul>
<li><a href="classes.html#classes.structure.Structure.nodes_values">(classes.structure.Structure property)</a>
</li>
</ul></li>
<li><a href="classes.html#classes.json_importer.JsonImporter.normalize_trajectories">normalize_trajectories() (classes.json_importer.JsonImporter method)</a>
</li>
</ul></td>
</tr></table>
<h2 id="O">O</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="classes.html#classes.structure_estimator.StructureEstimator.one_iteration_of_CTPC_algorithm">one_iteration_of_CTPC_algorithm() (classes.structure_estimator.StructureEstimator method)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="classes.html#classes.json_importer.JsonImporter.one_level_normalizing">one_level_normalizing() (classes.json_importer.JsonImporter method)</a>
</li>
</ul></td>
</tr></table>
<h2 id="P">P</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="classes.html#classes.network_graph.NetworkGraph.p_combs">p_combs() (classes.network_graph.NetworkGraph property)</a>
<ul>
<li><a href="classes.html#classes.set_of_cims.SetOfCims.p_combs">(classes.set_of_cims.SetOfCims property)</a>
</li>
</ul></li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="classes.html#classes.parameters_estimator.ParametersEstimator">ParametersEstimator (class in classes.parameters_estimator)</a>
</li>
<li><a href="classes.html#classes.cache.Cache.put">put() (classes.cache.Cache method)</a>
</li>
</ul></td>
</tr></table>
<h2 id="R">R</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="classes.html#classes.json_importer.JsonImporter.read_json_file">read_json_file() (classes.json_importer.JsonImporter method)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="classes.html#classes.network_graph.NetworkGraph.remove_node">remove_node() (classes.network_graph.NetworkGraph method)</a>
<ul>
<li><a href="classes.html#classes.structure.Structure.remove_node">(classes.structure.Structure method)</a>
</li>
</ul></li>
</ul></td>
</tr></table>
<h2 id="S">S</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="classes.html#classes.sample_path.SamplePath">SamplePath (class in classes.sample_path)</a>
Refactor AbstractImporter constructor to accept concatenated_samples dataframe/matrix
4 years ago
</li>
<li><a href="classes.html#classes.structure_estimator.StructureEstimator.save_plot_estimated_structure_graph">save_plot_estimated_structure_graph() (classes.structure_estimator.StructureEstimator method)</a>
Add docs folder for GPages
4 years ago
</li>
<li><a href="classes.html#classes.structure_estimator.StructureEstimator.save_results">save_results() (classes.structure_estimator.StructureEstimator method)</a>
</li>
<li><a href="classes.html#classes.set_of_cims.SetOfCims">SetOfCims (class in classes.set_of_cims)</a>
</li>
<li><a href="classes.html#classes.trajectory.Trajectory.size">size() (classes.trajectory.Trajectory method)</a>
</li>
<li><a href="classes.html#classes.abstract_importer.AbstractImporter.sorter">sorter() (classes.abstract_importer.AbstractImporter property)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
Refactor AbstractImporter constructor to accept concatenated_samples dataframe/matrix
4 years ago
<li><a href="classes.html#classes.structure_estimator.StructureEstimator.spurious_edges">spurious_edges() (classes.structure_estimator.StructureEstimator method)</a>
</li>
Add docs folder for GPages
4 years ago
<li><a href="classes.html#classes.conditional_intensity_matrix.ConditionalIntensityMatrix.state_residence_times">state_residence_times() (classes.conditional_intensity_matrix.ConditionalIntensityMatrix property)</a>
</li>
<li><a href="classes.html#classes.conditional_intensity_matrix.ConditionalIntensityMatrix.state_transition_matrix">state_transition_matrix() (classes.conditional_intensity_matrix.ConditionalIntensityMatrix property)</a>
</li>
<li><a href="classes.html#classes.structure.Structure">Structure (class in classes.structure)</a>
</li>
<li><a href="classes.html#classes.abstract_importer.AbstractImporter.structure">structure() (classes.abstract_importer.AbstractImporter property)</a>
<ul>
<li><a href="classes.html#classes.sample_path.SamplePath.structure">(classes.sample_path.SamplePath property)</a>
</li>
</ul></li>
<li><a href="classes.html#classes.structure_estimator.StructureEstimator">StructureEstimator (class in classes.structure_estimator)</a>
</li>
</ul></td>
</tr></table>
<h2 id="T">T</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="classes.html#classes.network_graph.NetworkGraph.time_filtering">time_filtering() (classes.network_graph.NetworkGraph property)</a>
</li>
<li><a href="classes.html#classes.network_graph.NetworkGraph.time_scalar_indexing_strucure">time_scalar_indexing_strucure() (classes.network_graph.NetworkGraph property)</a>
</li>
<li><a href="classes.html#classes.trajectory.Trajectory.times">times() (classes.trajectory.Trajectory property)</a>
</li>
<li><a href="classes.html#classes.sample_path.SamplePath.total_variables_count">total_variables_count() (classes.sample_path.SamplePath property)</a>
</li>
<li><a href="classes.html#classes.structure.Structure.total_variables_number">total_variables_number() (classes.structure.Structure property)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="classes.html#classes.sample_path.SamplePath.trajectories">trajectories() (classes.sample_path.SamplePath property)</a>
</li>
<li><a href="classes.html#classes.trajectory.Trajectory">Trajectory (class in classes.trajectory)</a>
</li>
<li><a href="classes.html#classes.trajectory.Trajectory.trajectory">trajectory() (classes.trajectory.Trajectory property)</a>
</li>
<li><a href="classes.html#classes.network_graph.NetworkGraph.transition_filtering">transition_filtering() (classes.network_graph.NetworkGraph property)</a>
</li>
<li><a href="classes.html#classes.network_graph.NetworkGraph.transition_scalar_indexing_structure">transition_scalar_indexing_structure() (classes.network_graph.NetworkGraph property)</a>
</li>
</ul></td>
</tr></table>
<h2 id="V">V</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="classes.html#classes.abstract_importer.AbstractImporter.variables">variables() (classes.abstract_importer.AbstractImporter property)</a>
</li>
</ul></td>
</tr></table>
</div>
<footer>
<hr/>
<div role="contentinfo">
<p>
&copy; Copyright 2020, Alessandro Bregoli, Filippo Martini.
</p>
</div>
Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a <a href="https://github.com/jucacrispim/sphinx_pdj_theme">theme</a> provided by <a href="http://poraodojuca.net">Porão do Juca</a>.
</footer>
</div>
</div>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'1.0',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true
};
</script>
<script type="text/javascript" src="_static/jquery.js">
</script>
<script type="text/javascript" src="_static/underscore.js">
</script>
<script type="text/javascript" src="_static/doctools.js">
</script>
<script type="text/javascript" src="_static/language_data.js">
</script>
<script type="text/javascript"
src="_static/js/theme.js"></script>
<script type="text/javascript"
src="_static/js/pdj.js"></script>
<script type="text/javascript">
jQuery(function () {
SphinxRtdTheme.StickyNav.enable();
});
</script>
</body>
</html>